jgi.p|Nanoce1779_2|387624, mRNA_10821 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|387624
Unique NamemRNA_10821
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length705
Alignment locationscaffold_69:58469..59173 +

Link to JBrowse

Properties
Property NameValue
TranscriptId387710
TrackFilteredModels2
ProteinId387624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:58469..59173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|387624gene_10821Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|387624mRNA_10821-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10821CDS_10821Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10821 ID=mRNA_10821|Name=jgi.p|Nanoce1779_2|387624|organism=Nannochloropsis oceanica|type=mRNA|length=705bp
CCTCATTCTCACCATCTTCTGTCCACACCGCACCCTCCTTGCCCGTGTCC
ATCTCAACCACCAGTGCATCGCCAGCGCCTTCTCCCTTCTCTCTTCGTGT
GGACATACGTCCTTCCGTCCGTTTCGCCACCCATCCTTTTCCCTTCCTCC
CCTCAGCCTATGTAGGCGGCCCTAGAGGAAAGCAAGCAATGGGCCATTCC
TTAACCAGATCCTTCCACTTAACTCTTTTCTCTCTCTCTCTCTCCCTCTC
TCTCTCTCTCTCTCTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGAATATGTGTGTGTGTGTGTGTGCACC
CTGCCTCTTTGTTACGTCTTGTCTTGTCTCTAAGATTCAGTTGACAAGCT
CAGAGTCGTTACACCTGCCCATGGGCTGGAGAGAGAAGGACTGGAGGATG
AGTCTTCATGAGCGTGCATTACCAGCATGTGGTGTTTGCTCTTTCCCTTT
CCCTGCTGGTCAGAATCAGGATCTTGGGTGTCCATTATCCATGATGGCTG
GGAGGGGGACATGATTAAGACCAAGTGCAAGGAGGAATTCGACTTGAGGG
AAAGAAACTCAGTGATGCTTGATAATCACTAGGGAAATGAAGAGTCTATT
TCTTC
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protein sequence of jgi.p|Nanoce1779_2|387624

>mRNA_10821-protein ID=mRNA_10821-protein|Name=jgi.p|Nanoce1779_2|387624|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MGHSLTRSFHLTLFSLSLSLSLSLSLCVCVCVCVCVCVCVCVCVCVCVCV
CVCVCVCVCVCVNMCVCVCAPCLFVTSCLVSKIQLTSSESLHLPMGWREK
DWRMSLHERALPACGVCSFPFPAGQNQDLGCPLSMMAGRGT*
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mRNA from alignment at scaffold_69:58469..59173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10821 ID=mRNA_10821|Name=jgi.p|Nanoce1779_2|387624|organism=Nannochloropsis oceanica|type=mRNA|length=705bp|location=Sequence derived from alignment at scaffold_69:58469..59173+ (Nannochloropsis oceanica)
CCTCATTCTCACCATCTTCTGTCCACACCGCACCCTCCTTGCCCGTGTCC
ATCTCAACCACCAGTGCATCGCCAGCGCCTTCTCCCTTCTCTCTTCGTGT
GGACATACGTCCTTCCGTCCGTTTCGCCACCCATCCTTTTCCCTTCCTCC
CCTCAGCCTATGTAGGCGGCCCTAGAGGAAAGCAAGCAATGGGCCATTCC
TTAACCAGATCCTTCCACTTAACTCTTTTCTCTCTCTCTCTCTCCCTCTC
TCTCTCTCTCTCTCTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGAATATGTGTGTGTGTGTGTGTGCACC
CTGCCTCTTTGTTACGTCTTGTCTTGTCTCTAAGATTCAGTTGACAAGCT
CAGAGTCGTTACACCTGCCCATGGGCTGGAGAGAGAAGGACTGGAGGATG
AGTCTTCATGAGCGTGCATTACCAGCATGTGGTGTTTGCTCTTTCCCTTT
CCCTGCTGGTCAGAATCAGGATCTTGGGTGTCCATTATCCATGATGGCTG
GGAGGGGGACATGATTAAGACCAAGTGCAAGGAGGAATTCGACTTGAGGG
AAAGAAACTCAGTGATGCTTGATAATCACTAGGGAAATGAAGAGTCTATT
TCTTC
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Coding sequence (CDS) from alignment at scaffold_69:58469..59173+

>mRNA_10821 ID=mRNA_10821|Name=jgi.p|Nanoce1779_2|387624|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_69:58469..59173+ (Nannochloropsis oceanica)
ATGGGCCATTCCTTAACCAGATCCTTCCACTTAACTCTTTTCTCTCTCTC
TCTCTCCCTCTCTCTCTCTCTCTCTCTGTGCGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATATGTGTGTGTG
TGTGTGTGCACCCTGCCTCTTTGTTACGTCTTGTCTTGTCTCTAAGATTC
AGTTGACAAGCTCAGAGTCGTTACACCTGCCCATGGGCTGGAGAGAGAAG
GACTGGAGGATGAGTCTTCATGAGCGTGCATTACCAGCATGTGGTGTTTG
CTCTTTCCCTTTCCCTGCTGGTCAGAATCAGGATCTTGGGTGTCCATTAT
CCATGATGGCTGGGAGGGGGACATGA
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Synonyms
Publications