jgi.p|Nanoce1779_2|638110, mRNA_2934 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638110
Unique NamemRNA_2934
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1428
Alignment locationscaffold_7:293983..296211 +

Link to JBrowse

Properties
Property NameValue
TranscriptId638196
TrackFilteredModels2
ProteinId638110
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:293983..296211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638110gene_2934Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638110mRNA_2934-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2934CDS_2934Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2934 ID=mRNA_2934|Name=jgi.p|Nanoce1779_2|638110|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
ATGGTGGCGTGGAAGCGGCGGCTGCATGGTGCCGTCTGCGAGTTCTTCGA
GGTAGACAAGCGGCATACCACCGTGGCCACCGAGGTCCGGGCGGGTATCA
CCACATTTTTGACTATGAGCTACATTCTGCTTGTCAACCCTCAAATCTTG
GCGCAGATAGGCTTCCCAAAATCCGACGTTGTGGTCGCCACCGCCGTGGG
CGCCGGGCTCGCCAGCATGGTCTGTGGGATCTTTGGCAACTTGCCTTTTG
GTCTTGCGCCTGGCACGGGCTTGAGCGCGTACCTATCTTATGGCCTCGTC
CTCGCTGGGGTGCTCACTCGCCCGCAAGCGATGACGGTATGTTTTTTGTC
GGGGTTTGCACTGGGCGTATCAGCCTTGGCGCAGGTTAGCACGGTCATTA
TGAGGGTTATACCAAGAGCAGTAAAACTCGCGACAGTCGTGGGGATGGGC
CTATTGATTGCATTAATTGGCATGGTGTCTATAAGGCTGGTGGTCCCGAA
TGAAGATACGTTGGTGACGCTTGGGGATTTTTCGGACTACCATATATGGT
TGGCGCTTGTGGGGTTGGTGGTGACAGGTTCAATGCTCTTCCACCAAGTA
AAGGGTGGGGTGCTCGCGGGTATCGTCCTCATTACCGTTTTTGTCTGGTG
TATGGATCATGACGGCCCCTCAGAGATCTTTTCCATCCCCCATCTGGAAT
ACGGCGTCACGAGAAACATCGACTTGACGCCCGCTTCCTTATCCTGGGAA
ATGCTCCCTCCATTGCTCGCGTTTTTATTTGTCGGTTTATTTGACATCTC
GGGAGTGATGTTCGGGCTGTCGTCTCTCGCAAAGATAATGGAGGAGGATG
GACATATACCGGGTAGTATTTGGGCGTTCTTAGGGTCGGGTTTAGGCACC
TTGGTGGCAGCTATGGCCGGGAGTTCGCCCATCATCATCCACGTGGAAAG
CGCGGCGGGGATCAGGGAAGGAGGAAGGACGGGATTGACGGCTGTTGTTG
TAGGATTATTGTTTTTTTTGAGTTTATTTTTCGCGCCTTTATTTGGACAC
GTCCCGACGGCGGCGACAGCACCAATTTTGATTCTGGTGGGGGCGATGAT
GATAGGAGAGAGTCAGCACATCGACTGGGCGGACATGAGTCAGGCGATCC
CGGCGTTTTTGACGAGCATGATGATGCCCTTCACGTTCTCGATCCCGAAT
GGAATTTTGTTCGGGGTGGGGATGAGCGTGACGTTTTTTGAAGAGGCCGA
CGAGCAGGCTGCCAGGGATATGGAGTTGTCGTCGTCGTTGACGCATGCGG
GGGGAGGAGGGCACCATATGCTGAGTCACCAGCCACCGTATCACCGGCAT
AGGAGTGGAAGTGGAAGCGGGAGCGATCGAAGTTCAGGCGGAGGGGCGGG
GGAGGGGGCATTTGCGATGCAGATATAG
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protein sequence of jgi.p|Nanoce1779_2|638110

>mRNA_2934-protein ID=mRNA_2934-protein|Name=jgi.p|Nanoce1779_2|638110|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MVAWKRRLHGAVCEFFEVDKRHTTVATEVRAGITTFLTMSYILLVNPQIL
AQIGFPKSDVVVATAVGAGLASMVCGIFGNLPFGLAPGTGLSAYLSYGLV
LAGVLTRPQAMTVCFLSGFALGVSALAQVSTVIMRVIPRAVKLATVVGMG
LLIALIGMVSIRLVVPNEDTLVTLGDFSDYHIWLALVGLVVTGSMLFHQV
KGGVLAGIVLITVFVWCMDHDGPSEIFSIPHLEYGVTRNIDLTPASLSWE
MLPPLLAFLFVGLFDISGVMFGLSSLAKIMEEDGHIPGSIWAFLGSGLGT
LVAAMAGSSPIIIHVESAAGIREGGRTGLTAVVVGLLFFLSLFFAPLFGH
VPTAATAPILILVGAMMIGESQHIDWADMSQAIPAFLTSMMMPFTFSIPN
GILFGVGMSVTFFEEADEQAARDMELSSSLTHAGGGGHHMLSHQPPYHRH
RSGSGSGSDRSSGGGAGEGAFAMQI*
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mRNA from alignment at scaffold_7:293983..296211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2934 ID=mRNA_2934|Name=jgi.p|Nanoce1779_2|638110|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp|location=Sequence derived from alignment at scaffold_7:293983..296211+ (Nannochloropsis oceanica)
ATGGTGGCGTGGAAGCGGCGGCTGCATGGTGCCGTCTGCGAGTTCTTCGA GGTAGACAAGCGGCATACCACCGTGGCCACCGAGGTCCGGGCGGGTATCA CCACATTTTTGACTATGAGCTACATTCTGCTTGTCAACCCTCAAATCTTG GCGCAGGTACGTTCGCAAGGGGTGGGGAGGTCTGGAAAGAGTCATCTGGC GTTTGAGTATATATATGCCCCCTCTGGGCCTCTCATCCGGCTGATGCACA AGCATGCTGACAACCACCGGTATTACCATTCCATGGATCGGCCGGGTCGT GTGGGCATGTGTATTATCGTGAAATCCGCTGTTGCTGGTCCACGAGCGTA AGTGCTTGTCAGCTCAATCCTGTATTCCTTCTTCATCACTCCACTTCCTC GAATATTTTTGAATCGGACGTCGATGTTCGCGATCACATCCGTTCCGCTC TCTCCATCGTTCTCCAGACCTCTCTTGACCCTCATGTCGTCTCTTCTTTT TTTCAAAACCATCTTTAACAGATAGGCTTCCCAAAATCCGACGTTGTGGT CGCCACCGCCGTGGGCGCCGGGCTCGCCAGCATGGTCTGTGGGATCTTTG GCAACTTGCCTTTTGGTCTTGCGCCTGGCACGGGCTTGAGCGCGTACCTA TCTTATGGCCTCGTCCTCGCTGGGGTGCTCACTCGCCCGCAAGCGATGAC GGTATGTTTTTTGTCGGGGTTTGCACTGGGCGTATCAGCCTTGGCGCAGG TTAGCACGGTCATTATGAGGGTTATACCAAGAGCAGTAAAACTCGCGACA GTCGTGGGGATGGGCCTATTGATTGCATTAATTGGCATGGTGTCTATAAG GCTGGTGGTCCCGAATGAAGATACGTTGGTGACGCTTGGGGATTTTTCGG ACTACCATATATGGTTGGCGCTTGTGGGGTTGGTGGTGACAGGTAAGAGG GGGGTAGAGGAATGAGGGAGGGAGCAAGGGAGGAAGGCATACACATTTTT CCCACAATGCTTGGAGTTCACTTTCTTTCGTCTTCTTCCCTTACTCTCCC TCCTTTTTCCAACAGGTTCAATGCTCTTCCACCAAGTAAAGGGTGGGGTG CTCGCGGGTATCGTCCTCATTACCGTTTTTGTCTGGTGTATGGATCATGA CGGCCCCTCAGAGATCTTTTCCATCCCCCATCTGGAATACGGCGTCACGA GAAACATCGACTTGACGCCCGCTTCCTTATCCTGGGAAATGCTCCCTCCA TTGCTCGCGTTTTTATTTGTCGGTTTATTTGACATCTCGGGAGTGATGTT CGGGCTGTCGTCTCTCGCAAAGATAATGGAGGAGGATGGACATATACCGG GTAGTATTTGGGCGTTCTTAGGGTCGGGTTTAGGCACCTTGGTGGCAGCT ATGGCCGGGAGTTCGCCCATCATCATCCACGTGGAAAGCGCGGCGGGGAT CAGGGAAGGAGGAAGGACGGGATTGACGGCTGTTGTTGTAGGATTATTGT TTTTTTTGAGTTTATTTTTCGCGCCTTTATTTGGACACGTCCCGACGGCG GCGACAGCACCAATTTTGATTCTGGTGGGGGCGATGATGATAGGAGAGAG TCAGCACATCGACTGGGCGGACATGAGTCAGGCGATCCCGGCGTTTTTGA CGAGCATGATGATGCCCTTCACGTTCTCGATCCCGAATGGAATTTTGTTC GGGGTGGGGATGAGCGTGACGTTTTTTGTGACGACTGGCGAGTTCCTGAG TTATTTGCCCCGGTGGATGTGGGGGGGGGGGGAGGGAGGGAATTGAGATA GGAAAGGGTGGAGGGATGGTGGAAGAAGAGGAGCAGGCAAGGAGGTTGCA GACAATTGATGAACGGAGTCGGTTAAAGGCGCCGCCTATACCATCGCCGG GGAAATTCCATCCGGGGGTCGGAGGAGGAGCAAGGGAAGGAGATCTTGCA TTTGGATCGCCGTCCGCATCGCACCAGCAGCATCATACTCTCTTCGATGA ACAGCCAATGACAAGGAGGTTTTCCTTGATTTTACCTAAGGAAGAGGCCG ACGAGCAGGCTGCCAGGGATATGGAGTTGTCGTCGTCGTTGACGCATGCG GGGGGAGGAGGGCACCATATGCTGAGTCACCAGCCACCGTATCACCGGCA TAGGAGTGGAAGTGGAAGCGGGAGCGATCGAAGTTCAGGCGGAGGGGCGG GGGAGGGGGCATTTGCGATGCAGATATAG
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Coding sequence (CDS) from alignment at scaffold_7:293983..296211+

>mRNA_2934 ID=mRNA_2934|Name=jgi.p|Nanoce1779_2|638110|organism=Nannochloropsis oceanica|type=CDS|length=5712bp|location=Sequence derived from alignment at scaffold_7:293983..296211+ (Nannochloropsis oceanica)
ATGGTGGCGTGGAAGCGGCGGCTGCATGGTGCCGTCTGCGAGTTCTTCGA
GGTAGACAAGCGGCATACCACCGTGGCCACCGAGGTCCGGGCGGGTATCA
CCACATTTTTGACTATGAGCTACATTCTGCTTGTCAACCCTCAAATCTTG
GCGCAGATAGGCTTCCCAAAATCCGACGTTGTGGTCGCCACCGCCGTGGG
CGCCGGGCTCGCCAGCATGGTCTGTGGGATCTTTGGCAACTTGCCTTTTG
GTCTTGCGCCTGGCACGGGCTTGAGCGCGTACCTATCTTATGGCCTCGTC
CTCGCTGGGGTGCTCACTCGCCCGCAAGCGATGACGGTATGTTTTTTGTC
GGGGTTTGCACTGGGCGTATCAGCCTTGGCGCAGGTTAGCACGGTCATTA
TGAGGGTTATACCAAGAGCAGTAAAACTCGCGACAGTCGTGGGGATGGGC
CTATTGATTGCATTAATTGGCATGGTGTCTATAAGGCTGGTGGTCCCGAA
TGAAGATACGTTGGTGACGCTTGGGGATTTTTCGGACTACCATATATGGT
TGGCGCTTGTGGGGTTGGTGGTGACAGGTTCAATGCTCTTCCACCAAGTA
AAGGGTGGGGTGCTCGCGGGTATCGTCCTCATTACCGTTTTTGTCTGGTG
TATGGATCATGACGGCCCCTCAGAGATCTTTTCCATCCCCCATCTGGAAT
ACGGCGTCACGAGAAACATCGACTTGACGCCCGCTTCCTTATCCTGGGAA
ATGCTCCCTCCATTGCTCGCGTTTTTATTTGTCGGTTTATTTGACATCTC
GGGAGTGATGTTCGGGCTGTCGTCTCTCGCAAAGATAATGGAGGAGGATG
GACATATACCGGGTAGTATTTGGGCGTTCTTAGGGTCGGGTTTAGGCACC
TTGGTGGCAGCTATGGCCGGGAGTTCGCCCATCATCATCCACGTGGAAAG
CGCGGCGGGGATCAGGGAAGGAGGAAGGACGGGATTGACGGCTGTTGTTG
TAGGATTATTGTTTTTTTTGAGTTTATTTTTCGCGCCTTTATTTGGACAC
GTCCCGACGGCGGCGACAGCACCAATTTTGATTCTGGTGGGGGCGATGAT
GATAGGAGAGAGTCAGCACATCGACTGGGCGGACATGAGTCAGGCGATCC
CGGCGTTTTTGACGAGCATGATGATGCCCTTCACGTTCTCGATCCCGAAT
GGAATTTTGTTCGGGGTGGGGATGAGCGTGACGTTTTTTGAAGAGGCCGA
CGAGCAGGCTGCCAGGGATATGGAGTTGTCGTCGTCGTTGACGCATGCGG
GGGGAGGAGGGCACCATATGCTGAGTCACCAGCCACCGTATCACCGGCAT
AGGAGTGGAAGTGGAAGCGGGAGCGATCGAAGTTCAGGCGGAGGGGCGGG
GGAGGGGGCATTTGCGATGCAGATATAGATGGTGGCGTGGAAGCGGCGGC
TGCATGGTGCCGTCTGCGAGTTCTTCGAGGTAGACAAGCGGCATACCACC
GTGGCCACCGAGGTCCGGGCGGGTATCACCACATTTTTGACTATGAGCTA
CATTCTGCTTGTCAACCCTCAAATCTTGGCGCAGATAGGCTTCCCAAAAT
CCGACGTTGTGGTCGCCACCGCCGTGGGCGCCGGGCTCGCCAGCATGGTC
TGTGGGATCTTTGGCAACTTGCCTTTTGGTCTTGCGCCTGGCACGGGCTT
GAGCGCGTACCTATCTTATGGCCTCGTCCTCGCTGGGGTGCTCACTCGCC
CGCAAGCGATGACGGTATGTTTTTTGTCGGGGTTTGCACTGGGCGTATCA
GCCTTGGCGCAGGTTAGCACGGTCATTATGAGGGTTATACCAAGAGCAGT
AAAACTCGCGACAGTCGTGGGGATGGGCCTATTGATTGCATTAATTGGCA
TGGTGTCTATAAGGCTGGTGGTCCCGAATGAAGATACGTTGGTGACGCTT
GGGGATTTTTCGGACTACCATATATGGTTGGCGCTTGTGGGGTTGGTGGT
GACAGGTTCAATGCTCTTCCACCAAGTAAAGGGTGGGGTGCTCGCGGGTA
TCGTCCTCATTACCGTTTTTGTCTGGTGTATGGATCATGACGGCCCCTCA
GAGATCTTTTCCATCCCCCATCTGGAATACGGCGTCACGAGAAACATCGA
CTTGACGCCCGCTTCCTTATCCTGGGAAATGCTCCCTCCATTGCTCGCGT
TTTTATTTGTCGGTTTATTTGACATCTCGGGAGTGATGTTCGGGCTGTCG
TCTCTCGCAAAGATAATGGAGGAGGATGGACATATACCGGGTAGTATTTG
GGCGTTCTTAGGGTCGGGTTTAGGCACCTTGGTGGCAGCTATGGCCGGGA
GTTCGCCCATCATCATCCACGTGGAAAGCGCGGCGGGGATCAGGGAAGGA
GGAAGGACGGGATTGACGGCTGTTGTTGTAGGATTATTGTTTTTTTTGAG
TTTATTTTTCGCGCCTTTATTTGGACACGTCCCGACGGCGGCGACAGCAC
CAATTTTGATTCTGGTGGGGGCGATGATGATAGGAGAGAGTCAGCACATC
GACTGGGCGGACATGAGTCAGGCGATCCCGGCGTTTTTGACGAGCATGAT
GATGCCCTTCACGTTCTCGATCCCGAATGGAATTTTGTTCGGGGTGGGGA
TGAGCGTGACGTTTTTTGAAGAGGCCGACGAGCAGGCTGCCAGGGATATG
GAGTTGTCGTCGTCGTTGACGCATGCGGGGGGAGGAGGGCACCATATGCT
GAGTCACCAGCCACCGTATCACCGGCATAGGAGTGGAAGTGGAAGCGGGA
GCGATCGAAGTTCAGGCGGAGGGGCGGGGGAGGGGGCATTTGCGATGCAG
ATATAGATGGTGGCGTGGAAGCGGCGGCTGCATGGTGCCGTCTGCGAGTT
CTTCGAGGTAGACAAGCGGCATACCACCGTGGCCACCGAGGTCCGGGCGG
GTATCACCACATTTTTGACTATGAGCTACATTCTGCTTGTCAACCCTCAA
ATCTTGGCGCAGATAGGCTTCCCAAAATCCGACGTTGTGGTCGCCACCGC
CGTGGGCGCCGGGCTCGCCAGCATGGTCTGTGGGATCTTTGGCAACTTGC
CTTTTGGTCTTGCGCCTGGCACGGGCTTGAGCGCGTACCTATCTTATGGC
CTCGTCCTCGCTGGGGTGCTCACTCGCCCGCAAGCGATGACGGTATGTTT
TTTGTCGGGGTTTGCACTGGGCGTATCAGCCTTGGCGCAGGTTAGCACGG
TCATTATGAGGGTTATACCAAGAGCAGTAAAACTCGCGACAGTCGTGGGG
ATGGGCCTATTGATTGCATTAATTGGCATGGTGTCTATAAGGCTGGTGGT
CCCGAATGAAGATACGTTGGTGACGCTTGGGGATTTTTCGGACTACCATA
TATGGTTGGCGCTTGTGGGGTTGGTGGTGACAGGTTCAATGCTCTTCCAC
CAAGTAAAGGGTGGGGTGCTCGCGGGTATCGTCCTCATTACCGTTTTTGT
CTGGTGTATGGATCATGACGGCCCCTCAGAGATCTTTTCCATCCCCCATC
TGGAATACGGCGTCACGAGAAACATCGACTTGACGCCCGCTTCCTTATCC
TGGGAAATGCTCCCTCCATTGCTCGCGTTTTTATTTGTCGGTTTATTTGA
CATCTCGGGAGTGATGTTCGGGCTGTCGTCTCTCGCAAAGATAATGGAGG
AGGATGGACATATACCGGGTAGTATTTGGGCGTTCTTAGGGTCGGGTTTA
GGCACCTTGGTGGCAGCTATGGCCGGGAGTTCGCCCATCATCATCCACGT
GGAAAGCGCGGCGGGGATCAGGGAAGGAGGAAGGACGGGATTGACGGCTG
TTGTTGTAGGATTATTGTTTTTTTTGAGTTTATTTTTCGCGCCTTTATTT
GGACACGTCCCGACGGCGGCGACAGCACCAATTTTGATTCTGGTGGGGGC
GATGATGATAGGAGAGAGTCAGCACATCGACTGGGCGGACATGAGTCAGG
CGATCCCGGCGTTTTTGACGAGCATGATGATGCCCTTCACGTTCTCGATC
CCGAATGGAATTTTGTTCGGGGTGGGGATGAGCGTGACGTTTTTTGAAGA
GGCCGACGAGCAGGCTGCCAGGGATATGGAGTTGTCGTCGTCGTTGACGC
ATGCGGGGGGAGGAGGGCACCATATGCTGAGTCACCAGCCACCGTATCAC
CGGCATAGGAGTGGAAGTGGAAGCGGGAGCGATCGAAGTTCAGGCGGAGG
GGCGGGGGAGGGGGCATTTGCGATGCAGATATAGATGGTGGCGTGGAAGC
GGCGGCTGCATGGTGCCGTCTGCGAGTTCTTCGAGGTAGACAAGCGGCAT
ACCACCGTGGCCACCGAGGTCCGGGCGGGTATCACCACATTTTTGACTAT
GAGCTACATTCTGCTTGTCAACCCTCAAATCTTGGCGCAGATAGGCTTCC
CAAAATCCGACGTTGTGGTCGCCACCGCCGTGGGCGCCGGGCTCGCCAGC
ATGGTCTGTGGGATCTTTGGCAACTTGCCTTTTGGTCTTGCGCCTGGCAC
GGGCTTGAGCGCGTACCTATCTTATGGCCTCGTCCTCGCTGGGGTGCTCA
CTCGCCCGCAAGCGATGACGGTATGTTTTTTGTCGGGGTTTGCACTGGGC
GTATCAGCCTTGGCGCAGGTTAGCACGGTCATTATGAGGGTTATACCAAG
AGCAGTAAAACTCGCGACAGTCGTGGGGATGGGCCTATTGATTGCATTAA
TTGGCATGGTGTCTATAAGGCTGGTGGTCCCGAATGAAGATACGTTGGTG
ACGCTTGGGGATTTTTCGGACTACCATATATGGTTGGCGCTTGTGGGGTT
GGTGGTGACAGGTTCAATGCTCTTCCACCAAGTAAAGGGTGGGGTGCTCG
CGGGTATCGTCCTCATTACCGTTTTTGTCTGGTGTATGGATCATGACGGC
CCCTCAGAGATCTTTTCCATCCCCCATCTGGAATACGGCGTCACGAGAAA
CATCGACTTGACGCCCGCTTCCTTATCCTGGGAAATGCTCCCTCCATTGC
TCGCGTTTTTATTTGTCGGTTTATTTGACATCTCGGGAGTGATGTTCGGG
CTGTCGTCTCTCGCAAAGATAATGGAGGAGGATGGACATATACCGGGTAG
TATTTGGGCGTTCTTAGGGTCGGGTTTAGGCACCTTGGTGGCAGCTATGG
CCGGGAGTTCGCCCATCATCATCCACGTGGAAAGCGCGGCGGGGATCAGG
GAAGGAGGAAGGACGGGATTGACGGCTGTTGTTGTAGGATTATTGTTTTT
TTTGAGTTTATTTTTCGCGCCTTTATTTGGACACGTCCCGACGGCGGCGA
CAGCACCAATTTTGATTCTGGTGGGGGCGATGATGATAGGAGAGAGTCAG
CACATCGACTGGGCGGACATGAGTCAGGCGATCCCGGCGTTTTTGACGAG
CATGATGATGCCCTTCACGTTCTCGATCCCGAATGGAATTTTGTTCGGGG
TGGGGATGAGCGTGACGTTTTTTGAAGAGGCCGACGAGCAGGCTGCCAGG
GATATGGAGTTGTCGTCGTCGTTGACGCATGCGGGGGGAGGAGGGCACCA
TATGCTGAGTCACCAGCCACCGTATCACCGGCATAGGAGTGGAAGTGGAA
GCGGGAGCGATCGAAGTTCAGGCGGAGGGGCGGGGGAGGGGGCATTTGCG
ATGCAGATATAG
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Synonyms
Publications