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Properties
| Property Name | Value |
|---|
| TranscriptId | 413464 |
| Track | FilteredModels2 |
| ProteinId | 413378 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:12437..14289 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3797 ID=mRNA_3797|Name=jgi.p|Nanoce1779_2|413378|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp
TCCCGTAGGCTACTGACAGCATTGACAGCCTGGCCAGCAGCGGCACCGGC
ACGCCCTCTTCCTTGTCCAGTCCGAGTAACAAGAAGCGGAGCGATGGGTA
TACATTGGCCTTGCTGGCGGCCATCATGGGGAATGTCCTCGAGTTTTACG
ATTTCAGTGTGTACGCTTTCTTCGCTCCCGAGATCGGCAAGCTTTTTTTC
CCGGCAGGCAACCCGGCCATGCGCGCCGTCAAGACCTTCACCGTCTTCGC
GGGCGGCTTCCTCATGCGGCCCCTCGGCTCCATCGTCTTGGGTGCCGTGG
GCGACAAGTACGGCACTGCTGCCGCCCTCAAGTGGTCCATTGCTTTAATG
ACCATCCCAACTGTCGTGACCGGCTGCCTCCCTACCTACGCGAAAGTCGG
GATTGCCGCTCCCCTCATGCTCACCGCCTGCCGACTCTTGCAGGGCTTGT
CGGTGGGCGGAGAGCTGATCGGAGCCTTGCTGCACACGTCGGACAATTCT
CCCGCGGAGCATCGAGGGTTTTTCTGCGGCCTGGTGGCAGTGTTCGGTAG
CTTGGGCAATCTCTTGGGGTCGCTGGTGAGTGTAATCATGCGACAGGCTA
TGACAGATGAGCAATTGATGAGCTGGGGCTGGCGTATTCCTTTCTTGACG
GGCTCGGTGCTAGGTTTTGTGGGCATCTTCCTCAGGACCCAGACGGGGGC
CTTGAAGGAGGGAGGGGGAGGGGGAGGGGAGGAACATCGAGTTATGGTGG
AGTTGATGGAGACCCCGGCGGCGGTCGAAGAAGAGCTGATCGCCGAGTAC
CACCACGCGGCTATGGGGGAGGAGGAGGGGGAGGAGGAGAGAGGTCTGGA
GGGAGGAAAGGCCACCACGCACTCACACCGGCAGCAGCAGCACCCACAGC
ACACCAAGTCGTTTTGTAGCATTGTCCGGGAGGCGGCCTCGGGGGACAAG
CCTCGTTTCCTCCGGGTCGTGTGTCTAGCCGCCCTCAACAATGCCCTCTT
CTACTTCCACTTCGTCTGGCTCGGGACCTACTTGGCCGAGCTCGCCCCCA
ACCCCATTCGGGCGCAAAAGGCCTTCAGTGTGACCTGCGTGGCGCAGGCC
GTTTTTATCGTCGGCAATCCCATCTGGGGCGCCGTCGGTGACAGTTCTGG
CGGCGCCAGCAAGCGCCTCCGGTGGAACATCGCCGGTGTCGCCCTCACCT
GCTTCGCCCCTACCTGTCTCCTTCTCCTCGTGGGCCCCGTGTCGCCTATA
ACCTGGGGGCAATCGTGGGAGGGTGCACGCCCATGCTGGCCAGTGCCTTG
GCCGAGAGCGATATGCTGTTGGCGCCCATCTTGCCTCTCTCGGCTCTGGC
AGTGGGGACATTTGTCGTGCTAGGCTCCTACGAGTTTGGCT back to topprotein sequence of jgi.p|Nanoce1779_2|413378 >mRNA_3797-protein ID=mRNA_3797-protein|Name=jgi.p|Nanoce1779_2|413378|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MGNVLEFYDFSVYAFFAPEIGKLFFPAGNPAMRAVKTFTVFAGGFLMRPL
GSIVLGAVGDKYGTAAALKWSIALMTIPTVVTGCLPTYAKVGIAAPLMLT
ACRLLQGLSVGGELIGALLHTSDNSPAEHRGFFCGLVAVFGSLGNLLGSL
VSVIMRQAMTDEQLMSWGWRIPFLTGSVLGFVGIFLRTQTGALKEGGGGG
GEEHRVMVELMETPAAVEEELIAEYHHAAMGEEEGEEERGLEGGKATTHS
HRQQQHPQHTKSFCSIVREAASGDKPRFLRVVCLAALNNALFYFHFVWLG
TYLAELAPNPIRAQKAFSVTCVAQAVFIVGNPIWGAVGDSSGGASKRLRW
NIAGVALTCFAPTCLLLLVGPVSPITWGQSWEGARPCWPVPWPRAICCWR
PSCLSRLWQWGHLSC* back to topmRNA from alignment at scaffold_8:12437..14289- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3797 ID=mRNA_3797|Name=jgi.p|Nanoce1779_2|413378|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at scaffold_8:12437..14289- (Nannochloropsis oceanica)
TCCCGTAGGCTACTGACAGCATTGACAGCCTGGCCAGCAGCGGCACCGGC
ACGCCCTCTTCCTTGTCCAGTCCGAGTAACAAGAAGCGGAGCGATGGGTA
TACATTGGCCTTGCTGGCGGCCATCATGGGGAATGTCCTCGAGTTTTACG
ATTTCAGGTAATACTTGTATCACTGGTCTCACTAGAGGGTGAGACAGTGG
ATGGTCCTGTAGTTGTTCTCGGTCTTTTCTTTTTCGTCACTCCACAGATT
GCTACACTTGCTCTCTCCCTTTCTCAACTCACCTTTCCCTGTCCTCCCTT
CCTTCTTACCCCGAACCGTTTCCCCCATTTAGTGTGTACGCTTTCTTCGC
TCCCGAGATCGGCAAGCTTTTTTTCCCGGCAGGTACGTTGCCTCTGGACG
TGCAAATGAAAGAGTATACGATGGATATGGTAACAGCATAGATTAAACAG
CACTAGAGCCAAGGATGAAAACTTGTGAGCGCGATCTCAAGAGCCTTAAC
TCCCTACCGCCCTCCTTCCCTTCCTCACTCCGCATTCAGGCAACCCGGCC
ATGCGCGCCGTCAAGACCTTCACCGTCTTCGCGGGCGGCTTCCTCATGCG
GCCCCTCGGCTCCATCGTCTTGGGTGCCGTGGGCGACAAGTACGGCACTG
CTGCCGCCCTCAAGTGGTCCATTGCTTTAATGACCATCCCAACTGTCGTG
ACCGGCTGCCTCCCTACCTACGCGAAAGTCGGGATTGCCGCTCCCCTCAT
GCTCACCGCCTGCCGACTCTTGCAGGGCTTGTCGGTGGGCGGAGAGCTGA
TCGGAGCCTTGCTGCACACGTCGGACAATTCTCCCGCGGAGCATCGAGGG
TTTTTCTGCGGCCTGGTGGCAGTGTTCGGTAGCTTGGGCAATCTCTTGGG
GTCGCTGGTGAGTGTAATCATGCGACAGGCTATGACAGATGAGCAATTGA
TGAGCTGGGGCTGGCGTATTCCTTTCTTGACGGGCTCGGTGCTAGGTTTT
GTGGGCATCTTCCTCAGGACCCAGACGGGGGCCTTGAAGGAGGGAGGGGG
AGGGGGAGGGGAGGAACATCGAGTTATGGTGGAGTTGATGGAGACCCCGG
CGGCGGTCGAAGAAGAGCTGATCGCCGAGTACCACCACGCGGCTATGGGG
GAGGAGGAGGGGGAGGAGGAGAGAGGTCTGGAGGGAGGAAAGGCCACCAC
GCACTCACACCGGCAGCAGCAGCACCCACAGCACACCAAGTCGTTTTGTA
GCATTGTCCGGGAGGCGGCCTCGGGGGACAAGCCTCGTTTCCTCCGGGTC
GTGTGTCTAGCCGCCCTCAACAATGCCCTCTTCTACTTCCACTTCGTCTG
GCTCGGGACCTACTTGGCCGAGCTCGCCCCCAACCCCATTCGGGCGCAAA
AGGCCTTCAGTGTGACCTGCGTGGCGCAGGCCGTTTTTATCGTCGGCAAT
CCCATCTGGGGCGCCGTCGGTGACAGTTCTGGCGGCGCCAGCAAGCGCCT
CCGGTGGAACATCGCCGGTGTCGCCCTCACCTGCTTCGCCCCTACCTGTC
TCCTTCTCCTCGTGGGCCCCGGTAAGGTCGAGCTATCTTTCTTGTACGCG
GTGCTTGTGGGCTTGGTCATGGGCTTTGGTGTGTCAGGAAACTACTACGC
CTGGGTGTGCGAATCTTTGAACGACTCCCCCTCCCGCTTCCTGACCACCA
GTGTCGCCTATAACCTGGGGGCAATCGTGGGAGGGTGCACGCCCATGCTG
GCCAGTGCCTTGGCCGAGAGCGATATGCTGTTGGCGCCCATCTTGCCTCT
CTCGGCTCTGGCAGTGGGGACATTTGTCGTGCTAGGCTCCTACGAGTTTG
GCT back to topCoding sequence (CDS) from alignment at scaffold_8:12437..14289- >mRNA_3797 ID=mRNA_3797|Name=jgi.p|Nanoce1779_2|413378|organism=Nannochloropsis oceanica|type=CDS|length=4992bp|location=Sequence derived from alignment at scaffold_8:12437..14289- (Nannochloropsis oceanica)
TGTCGCCTATAACCTGGGGGCAATCGTGGGAGGGTGCACGCCCATGCTGG
CCAGTGCCTTGGCCGAGAGCGATATGCTGTTGGCGCCCATCTTGCCTCTC
TCGGCTCTGGCAGTGGGGACATTTGTCGTGCTAGGCAACCCGGCCATGCG
CGCCGTCAAGACCTTCACCGTCTTCGCGGGCGGCTTCCTCATGCGGCCCC
TCGGCTCCATCGTCTTGGGTGCCGTGGGCGACAAGTACGGCACTGCTGCC
GCCCTCAAGTGGTCCATTGCTTTAATGACCATCCCAACTGTCGTGACCGG
CTGCCTCCCTACCTACGCGAAAGTCGGGATTGCCGCTCCCCTCATGCTCA
CCGCCTGCCGACTCTTGCAGGGCTTGTCGGTGGGCGGAGAGCTGATCGGA
GCCTTGCTGCACACGTCGGACAATTCTCCCGCGGAGCATCGAGGGTTTTT
CTGCGGCCTGGTGGCAGTGTTCGGTAGCTTGGGCAATCTCTTGGGGTCGC
TGGTGAGTGTAATCATGCGACAGGCTATGACAGATGAGCAATTGATGAGC
TGGGGCTGGCGTATTCCTTTCTTGACGGGCTCGGTGCTAGGTTTTGTGGG
CATCTTCCTCAGGACCCAGACGGGGGCCTTGAAGGAGGGAGGGGGAGGGG
GAGGGGAGGAACATCGAGTTATGGTGGAGTTGATGGAGACCCCGGCGGCG
GTCGAAGAAGAGCTGATCGCCGAGTACCACCACGCGGCTATGGGGGAGGA
GGAGGGGGAGGAGGAGAGAGGTCTGGAGGGAGGAAAGGCCACCACGCACT
CACACCGGCAGCAGCAGCACCCACAGCACACCAAGTCGTTTTGTAGCATT
GTCCGGGAGGCGGCCTCGGGGGACAAGCCTCGTTTCCTCCGGGTCGTGTG
TCTAGCCGCCCTCAACAATGCCCTCTTCTACTTCCACTTCGTCTGGCTCG
GGACCTACTTGGCCGAGCTCGCCCCCAACCCCATTCGGGCGCAAAAGGCC
TTCAGTGTGACCTGCGTGGCGCAGGCCGTTTTTATCGTCGGCAATCCCAT
CTGGGGCGCCGTCGGTGACAGTTCTGGCGGCGCCAGCAAGCGCCTCCGGT
GGAACATCGCCGGTGTCGCCCTCACCTGCTTCGCCCCTACCTGTCTCCTT
CTCCTCGTGGGCCCCGTGTGTACGCTTTCTTCGCTCCCGAGATCGGCAAG
CTTTTTTTCCCGGCAGATGGGGAATGTCCTCGAGTTTTACGATTTCAGTG
TCGCCTATAACCTGGGGGCAATCGTGGGAGGGTGCACGCCCATGCTGGCC
AGTGCCTTGGCCGAGAGCGATATGCTGTTGGCGCCCATCTTGCCTCTCTC
GGCTCTGGCAGTGGGGACATTTGTCGTGCTAGGCAACCCGGCCATGCGCG
CCGTCAAGACCTTCACCGTCTTCGCGGGCGGCTTCCTCATGCGGCCCCTC
GGCTCCATCGTCTTGGGTGCCGTGGGCGACAAGTACGGCACTGCTGCCGC
CCTCAAGTGGTCCATTGCTTTAATGACCATCCCAACTGTCGTGACCGGCT
GCCTCCCTACCTACGCGAAAGTCGGGATTGCCGCTCCCCTCATGCTCACC
GCCTGCCGACTCTTGCAGGGCTTGTCGGTGGGCGGAGAGCTGATCGGAGC
CTTGCTGCACACGTCGGACAATTCTCCCGCGGAGCATCGAGGGTTTTTCT
GCGGCCTGGTGGCAGTGTTCGGTAGCTTGGGCAATCTCTTGGGGTCGCTG
GTGAGTGTAATCATGCGACAGGCTATGACAGATGAGCAATTGATGAGCTG
GGGCTGGCGTATTCCTTTCTTGACGGGCTCGGTGCTAGGTTTTGTGGGCA
TCTTCCTCAGGACCCAGACGGGGGCCTTGAAGGAGGGAGGGGGAGGGGGA
GGGGAGGAACATCGAGTTATGGTGGAGTTGATGGAGACCCCGGCGGCGGT
CGAAGAAGAGCTGATCGCCGAGTACCACCACGCGGCTATGGGGGAGGAGG
AGGGGGAGGAGGAGAGAGGTCTGGAGGGAGGAAAGGCCACCACGCACTCA
CACCGGCAGCAGCAGCACCCACAGCACACCAAGTCGTTTTGTAGCATTGT
CCGGGAGGCGGCCTCGGGGGACAAGCCTCGTTTCCTCCGGGTCGTGTGTC
TAGCCGCCCTCAACAATGCCCTCTTCTACTTCCACTTCGTCTGGCTCGGG
ACCTACTTGGCCGAGCTCGCCCCCAACCCCATTCGGGCGCAAAAGGCCTT
CAGTGTGACCTGCGTGGCGCAGGCCGTTTTTATCGTCGGCAATCCCATCT
GGGGCGCCGTCGGTGACAGTTCTGGCGGCGCCAGCAAGCGCCTCCGGTGG
AACATCGCCGGTGTCGCCCTCACCTGCTTCGCCCCTACCTGTCTCCTTCT
CCTCGTGGGCCCCGTGTGTACGCTTTCTTCGCTCCCGAGATCGGCAAGCT
TTTTTTCCCGGCAGATGGGGAATGTCCTCGAGTTTTACGATTTCAGTGTC
GCCTATAACCTGGGGGCAATCGTGGGAGGGTGCACGCCCATGCTGGCCAG
TGCCTTGGCCGAGAGCGATATGCTGTTGGCGCCCATCTTGCCTCTCTCGG
CTCTGGCAGTGGGGACATTTGTCGTGCTAGGCAACCCGGCCATGCGCGCC
GTCAAGACCTTCACCGTCTTCGCGGGCGGCTTCCTCATGCGGCCCCTCGG
CTCCATCGTCTTGGGTGCCGTGGGCGACAAGTACGGCACTGCTGCCGCCC
TCAAGTGGTCCATTGCTTTAATGACCATCCCAACTGTCGTGACCGGCTGC
CTCCCTACCTACGCGAAAGTCGGGATTGCCGCTCCCCTCATGCTCACCGC
CTGCCGACTCTTGCAGGGCTTGTCGGTGGGCGGAGAGCTGATCGGAGCCT
TGCTGCACACGTCGGACAATTCTCCCGCGGAGCATCGAGGGTTTTTCTGC
GGCCTGGTGGCAGTGTTCGGTAGCTTGGGCAATCTCTTGGGGTCGCTGGT
GAGTGTAATCATGCGACAGGCTATGACAGATGAGCAATTGATGAGCTGGG
GCTGGCGTATTCCTTTCTTGACGGGCTCGGTGCTAGGTTTTGTGGGCATC
TTCCTCAGGACCCAGACGGGGGCCTTGAAGGAGGGAGGGGGAGGGGGAGG
GGAGGAACATCGAGTTATGGTGGAGTTGATGGAGACCCCGGCGGCGGTCG
AAGAAGAGCTGATCGCCGAGTACCACCACGCGGCTATGGGGGAGGAGGAG
GGGGAGGAGGAGAGAGGTCTGGAGGGAGGAAAGGCCACCACGCACTCACA
CCGGCAGCAGCAGCACCCACAGCACACCAAGTCGTTTTGTAGCATTGTCC
GGGAGGCGGCCTCGGGGGACAAGCCTCGTTTCCTCCGGGTCGTGTGTCTA
GCCGCCCTCAACAATGCCCTCTTCTACTTCCACTTCGTCTGGCTCGGGAC
CTACTTGGCCGAGCTCGCCCCCAACCCCATTCGGGCGCAAAAGGCCTTCA
GTGTGACCTGCGTGGCGCAGGCCGTTTTTATCGTCGGCAATCCCATCTGG
GGCGCCGTCGGTGACAGTTCTGGCGGCGCCAGCAAGCGCCTCCGGTGGAA
CATCGCCGGTGTCGCCCTCACCTGCTTCGCCCCTACCTGTCTCCTTCTCC
TCGTGGGCCCCGTGTGTACGCTTTCTTCGCTCCCGAGATCGGCAAGCTTT
TTTTCCCGGCAGATGGGGAATGTCCTCGAGTTTTACGATTTCAGTGTCGC
CTATAACCTGGGGGCAATCGTGGGAGGGTGCACGCCCATGCTGGCCAGTG
CCTTGGCCGAGAGCGATATGCTGTTGGCGCCCATCTTGCCTCTCTCGGCT
CTGGCAGTGGGGACATTTGTCGTGCTAGGCAACCCGGCCATGCGCGCCGT
CAAGACCTTCACCGTCTTCGCGGGCGGCTTCCTCATGCGGCCCCTCGGCT
CCATCGTCTTGGGTGCCGTGGGCGACAAGTACGGCACTGCTGCCGCCCTC
AAGTGGTCCATTGCTTTAATGACCATCCCAACTGTCGTGACCGGCTGCCT
CCCTACCTACGCGAAAGTCGGGATTGCCGCTCCCCTCATGCTCACCGCCT
GCCGACTCTTGCAGGGCTTGTCGGTGGGCGGAGAGCTGATCGGAGCCTTG
CTGCACACGTCGGACAATTCTCCCGCGGAGCATCGAGGGTTTTTCTGCGG
CCTGGTGGCAGTGTTCGGTAGCTTGGGCAATCTCTTGGGGTCGCTGGTGA
GTGTAATCATGCGACAGGCTATGACAGATGAGCAATTGATGAGCTGGGGC
TGGCGTATTCCTTTCTTGACGGGCTCGGTGCTAGGTTTTGTGGGCATCTT
CCTCAGGACCCAGACGGGGGCCTTGAAGGAGGGAGGGGGAGGGGGAGGGG
AGGAACATCGAGTTATGGTGGAGTTGATGGAGACCCCGGCGGCGGTCGAA
GAAGAGCTGATCGCCGAGTACCACCACGCGGCTATGGGGGAGGAGGAGGG
GGAGGAGGAGAGAGGTCTGGAGGGAGGAAAGGCCACCACGCACTCACACC
GGCAGCAGCAGCACCCACAGCACACCAAGTCGTTTTGTAGCATTGTCCGG
GAGGCGGCCTCGGGGGACAAGCCTCGTTTCCTCCGGGTCGTGTGTCTAGC
CGCCCTCAACAATGCCCTCTTCTACTTCCACTTCGTCTGGCTCGGGACCT
ACTTGGCCGAGCTCGCCCCCAACCCCATTCGGGCGCAAAAGGCCTTCAGT
GTGACCTGCGTGGCGCAGGCCGTTTTTATCGTCGGCAATCCCATCTGGGG
CGCCGTCGGTGACAGTTCTGGCGGCGCCAGCAAGCGCCTCCGGTGGAACA
TCGCCGGTGTCGCCCTCACCTGCTTCGCCCCTACCTGTCTCCTTCTCCTC
GTGGGCCCCGTGTGTACGCTTTCTTCGCTCCCGAGATCGGCAAGCTTTTT
TTCCCGGCAGATGGGGAATGTCCTCGAGTTTTACGATTTCAG back to top
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