jgi.p|Nanoce1779_2|586026, mRNA_3983 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586026
Unique NamemRNA_3983
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2330
Alignment locationscaffold_8:549183..551648 -

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Properties
Property NameValue
TranscriptId586112
TrackFilteredModels2
ProteinId586026
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:549183..551648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586026gene_3983Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586026mRNA_3983-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3983CDS_3983Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3983 ID=mRNA_3983|Name=jgi.p|Nanoce1779_2|586026|organism=Nannochloropsis oceanica|type=mRNA|length=2330bp
ACATACGACATTCACACAGCCCCTTCAAACACACCACACAACATACAGCC
AGTACCCTCACGTAAGCCCATCATGTTCCGCAAGACCCTCGTGCTCCTGG
CCGCGGCCGCCGCCTGTGCCACCGTCTCCGCCGACTCCACCCCCGCCGCT
GAGGCAGCGAAAGTCTTAGACAACATCCCTGAGGCGTCCCTGTCGGTGAT
TTGTGCGCCCCAAGCCGTGTCGCTGAATACTCCCATTTACGTGAACCTGC
ATTACTCGTCGCCTTTCTCGCGGCCTATGGCGATCCACGTGGACCTGCTC
AACGCGGACACGAACGAATGGCAGGCGGGCGACAAGGTCAAGGTGACAGG
TATGAAGGGGAACGTCACCGCCCGTGTGCTTGTGCCGCAAGAAGCCAAAG
CACCCTTCAAGTGGCACGCATACATCGCTCCCCAGGACGAGAACTGGCCC
AACATGCTTGCGACTACCACCTTTTCTGCGGACATTGGCGCTAAGGTCGT
GGACCCTTGTGCGCCGCTGAAGAACACGGCGCGGGTGTCTAACAAGCCGG
CTGATTTCAACTACGTGCTGGTCAAGGACTACCCGTCGGGCTTCGCAGCG
GGCGCCAAGGCCCCTGTCAAGGTGCAGTACAATCTGATGCCGGATCAGCC
CGCCACTTACGTCTCGGCCGTGCTCTTGCGCTCCAGCGACGACGAGGTGG
TGGCATCCGCCGCGGCTCAGGCAGAGGAAGGCGAGCACACCACGACCATG
ATGCTGGACGTGCCTGCGGGCGCTGCAGCCGGCGAGCCTGTGTACCTGAG
GGCCATCCTCAAACCGGCTGGCAAGGCCTTCAGTGAGCGCGTCGCCGAGG
ACCGGGTCTGGGCCACGGCTGTCTACACCACCCGCAGGCTCCGCGCGTAG
ACTGTCTCGTATCCATGTATAAAGTTTGGATGTCAGAGGGCTACCTCGTA
TCCCAGTAAGTAAAGTTATGGTACAGGCAGGTAGTGTCTTAAGTGAAAAA
AGAAAAAGAAATAGAAGAAATGAAAGGTGGAATCAGGGAGTAGCGAGCGC
GGTGAAGCAACGACGGCATGTATGGTTTGAGTACGGAAATGACGTCGTTG
GAAGAACTGCCTTCCTCCTGTTCCTGGACTGGAAACGGAGAGATAAGAGG
GTAGAGGAATTAATCTAAGGAACCCCACAAATGAGAAGAGAAAAAGAGAA
GGCCTGTCTGTGGTCTACGCGCCCAAAGAAACGACAACACGCTCCTTACC
ACCGTGGGGAAAATATGCCTAGATTTTCCTTGTTGCACTTGTCATAAATC
CATATCAACAAGAAAAGGTGGAAGAAGCCATGTCTGTTTCACACACGAGT
TTTCTGTAGGTAGATAAGTGGGCAAGTACACACAGATCAGCAGAGATGTA
TACTTTCCTTTTTTATCGCTCTGTGTCGTTTTCCCCTGTTCTTTCTCATG
ATCTGCTCTTTGCACATATTCATCTATATACACATATGCAAACACATCCT
TTTCCTTTTGGCCCTCCCCCATCGCCGTCTTCTCTCCGTCTTCTCTTTAC
CGTGCTTTGCTTGACGTCATGCTACTTTCTTCGTTCTAGCGTCCGTGTGG
AATCATGTTTCGACCCGACCCGAAGCACACGCACAGTTTTCATCCTCATC
TTTCAAACATCCTCTGCCTCTCCCATTGCGTCGAAATCCCGCCCCCTCGC
TTTCGACTATCTGCTATCCCCCCCTCAAAAACACGTGTGGGAGGCATCTG
AACTACGCGGTTTGTTTTTTCTATTTCCCCCCCTTTTCCTACTCTCCTTC
TTCGTCGTCGTTCCTCTCATCCGCTTCTGTCTATTGCTTTTTGGGCCTTT
CCCCCAATTAGACACATATATGCACCTTTTCCTACGCTGCCCTTTAATTT
GGCAGCAAATCCACGTCCCTCCCTCTTTCTACCTCCCACTCCCCCCCTTC
CCTCCCTTTTTTCTTCCCTCTCGCCTTTCTCAAACAGCCCACCTTTACTT
CTTCTCATTCAGCAGTCCCCTCTCCCTTCCCTTCCCTCCTCCACCTCCTT
CCGAGATCCTCATCTCCTTCCATACCCTCTTCTTCCCCTCCACTTCCTCC
TGCAGTTCGGCCAAGACCTTTCTTTCCTCCTCGACCGTCTGTGCCAGCGA
AGCCGTTTCTTCCTCCGCACGCGCTCGCTCCTCTTGCGCCTGTCGAATTC
TCCGACGCAAAACCTCCAAGGTGCCTGTCGTCCCTTCGAGCTCTATCCAC
AAGTCCCTCATCCGCTCTTCCACTTTGTACACCTCCTCCTCCCCTACTGA
GGGCAAGGGCAAAGTCCTCCCCTCCCCCCC
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protein sequence of jgi.p|Nanoce1779_2|586026

>mRNA_3983-protein ID=mRNA_3983-protein|Name=jgi.p|Nanoce1779_2|586026|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MFRKTLVLLAAAAACATVSADSTPAAEAAKVLDNIPEASLSVICAPQAVS
LNTPIYVNLHYSSPFSRPMAIHVDLLNADTNEWQAGDKVKVTGMKGNVTA
RVLVPQEAKAPFKWHAYIAPQDENWPNMLATTTFSADIGAKVVDPCAPLK
NTARVSNKPADFNYVLVKDYPSGFAAGAKAPVKVQYNLMPDQPATYVSAV
LLRSSDDEVVASAAAQAEEGEHTTTMMLDVPAGAAAGEPVYLRAILKPAG
KAFSERVAEDRVWATAVYTTRRLRA*
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mRNA from alignment at scaffold_8:549183..551648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3983 ID=mRNA_3983|Name=jgi.p|Nanoce1779_2|586026|organism=Nannochloropsis oceanica|type=mRNA|length=2466bp|location=Sequence derived from alignment at scaffold_8:549183..551648- (Nannochloropsis oceanica)
ACATACGACATTCACACAGCCCCTTCAAACACACCACACAACATACAGCC
AGTACCCTCACGTAAGCCCATCATGTTCCGCAAGACCCTCGTGCTCCTGG
CCGCGGCCGCCGCCTGTGCCACCGTCTCCGCCGACTCCACCCCCGCCGCT
GAGGCAGCGAAAGTCTTAGACAACATCCCTGAGGCGTCCCTGTCGGTGAT
TTGTGCGCCCCAAGCCGTGTCGCTGAATACTCCCATTTACGTGAACCTGC
ATTACTCGTCGCCTTTCTCGCGGCCTATGGCGATCCACGTGGACCTGCTC
AACGCGGACACGAACGAATGGCAGGCGGGCGACAAGGTCAAGGTGACAGG
TATGAAGGGGAACGTCACCGCCCGTGTGCTTGTGCCGCAAGAAGCCAAAG
CACCCTTCAAGTGGCACGCATACATCGCTCCCCAGGACGAGAACTGGCCC
AACATGCTTGCGACTACCACCTTTTCTGCGGACATTGGCGCTAAGGTCGT
GGACCCTTGTGCGCCGCTGAAGAACACGGCGCGGGTGTCTAACAAGCCGG
CTGATTTCAACTACGTGCTGGTCAAGGACTACCCGTCGGGCTTCGCAGCG
GGCGCCAAGGCCCCTGTCAAGGTGCAGTACAATCTGATGCCGGATCAGCC
CGCCACTTACGTCTCGGCCGTGCTCTTGCGCTCCAGCGACGACGAGGTGG
TGGCATCCGCCGCGGCTCAGGCAGAGGAAGGCGAGCACACCACGACCATG
ATGCTGGACGTGCCTGCGGGCGCTGCAGCCGGCGAGCCTGTGTACCTGAG
GGCCATCCTCAAACCGGCTGGCAAGGCCTTCAGTGAGCGCGTCGCCGAGG
ACCGGGTCTGGGCCACGGCTGTCTACACCACCCGCAGGCTCCGCGCGTAG
ACTGTCTCGTATCCATGTATAAAGTTTGGATGTCAGAGGGCTACCTCGTA
TCCCAGTAAGTAAAGTTATGGTACAGGCAGGTAGTGTCTTAAGTGAAAAA
AGAAAAAGAAATAGAAGAAATGAAAGGTGGAATCAGGGAGTAGCGAGCGC
GGTGAAGCAACGACGGCATGTATGGTTTGAGTACGGAAATGACGTCGTTG
GAAGAACTGCCTTCCTCCTGTTCCTGGACTGGAAACGGAGAGATAAGAGG
GTAGAGGAATTAATCTAAGGAACCCCACAAATGAGAAGAGAAAAAGAGAA
GGCCTGTCTGTGGTCTACGCGCCCAAAGAAACGACAACACGCTCCTTACC
ACCGTGGGGAAAATATGCCTAGATTTTCCTTGTTGCACTTGTCATAAATC
CATATCAACAAGAAAAGGTGGAAGAAGCCATGTCTGTTTCACACACGAGT
TTTCTGTAGGTAGATAAGTGGGCAAGTACACACAGATCAGCAGAGATGTA
TACTTTCCTTTTTTATCGCTCTGTGTCGTTTTCCCCTGTTCTTTCTCATG
ATCTGCTCTTTGCACATATTCATCTATATACACATATGCAAACACATCCT
TTTCCTTTTGGCCCTCCCCCATCGCCGTCTTCTCTCCGTCTTCTCTTTAC
CGTGCTTTGCTTGACGTCATGCTACTTTCTTCGTTCTAGCGTCCGTGTGG
AATCATGTTTCGACCCGACCCGAAGCACACGCACAGTTTTCATCCTCATC
TTTCAAACATCCTCTGCCTCTCCCATTGCGTCGAAATCCCGCCCCCTCGC
TTTCGACTATCTGCTATCCCCCCCTCAAAAACACGTGTGGGAGGCATCTG
AACTACGCGGTTTGTTTTTTCTATTTCCCCCCCTTTTCCTACTCTCCTTC
TTCGTCGTCGTTCCTCTCATCCGCTTCTGTCTATTGCTTTTTGGGCCTTT
CCCCCAATTAGACACATATATGCACCTTTTCCTACGCTGCCCTTTAATTT
GGCAGCAAATCCACGTCCCTCCCTCTTTCTACCTCCCACTCCCCCCCTTC
CCTCCCTTTTTTCTTCCCTCTCGCCTTTCTCAAACAGCCCACCTTTACTT
CTTCTCATTCAGCAGTCCCCTCTCCCTTCCCTTCCCTCCTCCACCTCCTT
CCGAGATCCTCATCTCCTTCCATACCCTCTTCTTCCCCTCCACTTCCTCC
TGCAGTTCGGCCAAGACCTTTCTTTCCTCCTCGACCGTCTGTGCCAGCGA
AGCCGTTTCTTCCTCCGCACGCGCTCGCTCCTCTTGCGCCTGTCGAATTC
TCCGACGCAAAACCTCCAAGGTGCCTGTTAGGATAAAAGCGGGAGGAAAA
GAGGTAAGGGAAGAAAGAGACCAGGAAACTCAATGATGCTGCCTCTAATT
ACTCTTCCACTCCCTCTCCCTCCCTTCCTCCCTTCCTCCTTCCTTCCCTC
ACACACGTACCTGTCGTCCCTTCGAGCTCTATCCACAAGTCCCTCATCCG
CTCTTCCACTTTGTACACCTCCTCCTCCCCTACTGAGGGCAAGGGCAAAG
TCCTCCCCTCCCCCCC
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Coding sequence (CDS) from alignment at scaffold_8:549183..551648-

>mRNA_3983 ID=mRNA_3983|Name=jgi.p|Nanoce1779_2|586026|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_8:549183..551648- (Nannochloropsis oceanica)
ATGTTCCGCAAGACCCTCGTGCTCCTGGCCGCGGCCGCCGCCTGTGCCAC
CGTCTCCGCCGACTCCACCCCCGCCGCTGAGGCAGCGAAAGTCTTAGACA
ACATCCCTGAGGCGTCCCTGTCGGTGATTTGTGCGCCCCAAGCCGTGTCG
CTGAATACTCCCATTTACGTGAACCTGCATTACTCGTCGCCTTTCTCGCG
GCCTATGGCGATCCACGTGGACCTGCTCAACGCGGACACGAACGAATGGC
AGGCGGGCGACAAGGTCAAGGTGACAGGTATGAAGGGGAACGTCACCGCC
CGTGTGCTTGTGCCGCAAGAAGCCAAAGCACCCTTCAAGTGGCACGCATA
CATCGCTCCCCAGGACGAGAACTGGCCCAACATGCTTGCGACTACCACCT
TTTCTGCGGACATTGGCGCTAAGGTCGTGGACCCTTGTGCGCCGCTGAAG
AACACGGCGCGGGTGTCTAACAAGCCGGCTGATTTCAACTACGTGCTGGT
CAAGGACTACCCGTCGGGCTTCGCAGCGGGCGCCAAGGCCCCTGTCAAGG
TGCAGTACAATCTGATGCCGGATCAGCCCGCCACTTACGTCTCGGCCGTG
CTCTTGCGCTCCAGCGACGACGAGGTGGTGGCATCCGCCGCGGCTCAGGC
AGAGGAAGGCGAGCACACCACGACCATGATGCTGGACGTGCCTGCGGGCG
CTGCAGCCGGCGAGCCTGTGTACCTGAGGGCCATCCTCAAACCGGCTGGC
AAGGCCTTCAGTGAGCGCGTCGCCGAGGACCGGGTCTGGGCCACGGCTGT
CTACACCACCCGCAGGCTCCGCGCGTAG
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Synonyms
Publications