jgi.p|Nanoce1779_2|586714, mRNA_4148 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586714
Unique Name	mRNA_4148
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2640
Alignment location	scaffold_8:946404..949043 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586800
Track	FilteredModels2
ProteinId	586714

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:946404..949043 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586714	gene_4148	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586714	mRNA_4148-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4148	CDS_4148	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:946404..949043-
coding sequence from alignment at scaffold_8:946404..949043-

mRNA sequence

>mRNA_4148 ID=mRNA_4148|Name=jgi.p|Nanoce1779_2|586714|organism=Nannochloropsis oceanica|type=mRNA|length=2640bp
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGAGAGGAGAT
ATATCTGCTACTGCCCTTGCCGCCGTCGACTAAGTGGGGGAGAGGAGAAA
GAGAGGAGGCGGTGGAGACTCCGTGGGAAGAAGTACATGCCCTTGGCACG
AAGGAGGAAGGAAGGGAAGACGGACAAATGGAGGAAGGAAAGGAGGAGGA
GGTAGGGGACATAGAGGAGGAGGAACACAAGCGCCTCAGTAATTCGGAAG
CACGCATGGAGAGAAGACGGGCATCGATACTGGAGAGCGTCGAGAAATTC
CGTACCCCTCGTATTCTTCCCCTTTTCTCTCCTCCCCCTTCGCCCATGTC
TTTTCCTGATGCTCCAACTTCCCCTGCGAAAGCCACGTCAGGAGCAGCTG
TAGCGGCGTCGCACATCTTCACCAAAGAAGGCATAGCTTGATGAGCGAGG
GCGAGGTGCCCAGGGAGGACAAGGGAGAGGACACGCATAATCTCTACGAG
AAGGGCAGTCGCTCTTCCTTGAGAAAGATCTTCGGTAGGACCGCTTACAC
AGAGGCTGGTAAGCGCCTCGAGGATGTTACATTGGAGGAGGAGGGAGAGG
AGGACGGAGAGGTAGGGGTCCAGCAAGTTGAGCGGGGGACTGCAAGAGGG
AATGAAGGAGGGGGGAGCAGGAGATGGTAGTCGATGAGGAGGAGGAGGAG
CGAAGCCGTTCCCACGCCTGTGCCCCTGCTGGCCATGGATCACCCTTTTG
TCACTCTCACTATCCATGCCTCTGTCACCCCCTTTTGACTTCATTTCCGA
AAGTGATCGGCCCGTCCACCCGCCCTTCCTCTCTCTTCCGGTATCCTCCA
TCACTCCCTCAACTCCTCCCCCTCCTCTTTCTCCTCCTCCTCCCCCCCCC
CCCTTCCCTCCCTTCCTTACTCCCCTTAATAAAGGCAACAGCACATCTTC
CAGGACTTCAAACAACGCGTATCTCAACAGGGGGTCCACAGATCCATCGC
CCAGCACTCCTTCAATCAACGCCCCTATACCCTTCCCCCTCTCTGAAGCC
AATACACACATGCCTGCCCATGTCCGCAACAGGAGTCGCAGGGCCCGCTG
GCTGCAACGGAGGATGGGAGGGAGGACGGGAGGGAGGGAGGAAGAGGAGG
AGGAGGGGAAATTGTCCAGGTTGGTGAAGGGGGAGAGGAGGAGTTGGAGG
TCGAGGAAGGAATGGAGGAAGCGGCGACTGGAAGGGTTGTCGATGAGGTG
GAGGAGGGTGAGGAGGATGGGCTCGGCAAGGGAGGAAGCGAGGGAGGGAG
CGAGGACAGCTTCGATGAGGGGTCGGATACCGTCACAAATGACAACGAGC
TCGGTGTGGGTGAGGGCGATGTTTCGCAGGGTTTCTAGAGCAAGACGGCG
GAAGAAATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGATGCT
GCTGCTGCTTGCGTACGGTAGCGCTTTCCTTGTGCCCACAGACAGCGACC
AGAGACATGAGTAGCGTGTAGACAGCAGATACGGCTGGGCTGTGATCGGA
GGAGGAGACACGGGGATACCTTCCTTGGTGGTGGAGGGCAAAGATCGCAT
GTGTCACTTTAAGGGCTTCGAGCCTCTCGAACGCAGTGAGCTTTTCGCCA
CTCTCTTCGTGGTTGACATCCTCATCGTGATGATGGTACTGATAGTGAAA
CCGTGTAGCAGGGCTTCTTTTCCCTCCTTCCCTCCTTCTCTCCCTTCCTC
GTCCCCCTCCTCCTCGCTCCAAAGAACGCATGACCAAGACATCTAATCGG
AGCCGATCAAAGCATTCCAACCTATGCAAAGCCGCTGCTGGCCCCCTTGC
TGCCGTTAAAAGAATGTACCGCGTCGCCCGCAGAGCCAGCGCTCGGAGCG
TGGCCCCGTCATTGCCACTGCTGCTGTTGCTGTTGTTGGCAATGCTATTG
TTGGATCTGCGGTAGCAAGTCCAGGACAAAGCCAGGAGAGCCCGCATGCT
TTCCAGAAGCACGGATACATCCACTGCTACCATTATTTTAGTGCTGCTGT
CGCTGCTACTGTCGGGAGTGGTGCTTATGGTGGTGGAGAAGGAGGGGGAG
GTGGACAAAGAAAGGAGGGCCTTGGTGAGCGCACCTAGCCCCTCTAAAAC
CGTGCGCAGCTCGCCCGAGTCCCGGTCGTGCGCCTCGCGTGGCGGCTTCG
ACAGTTTTTGGAGGTATATATTTTGTGCAGTGGCAGTGTCATCGGGGACG
ACGAGGAAGAGGGCATTGAGCTCCGCCTTGCTCATGATTAAATTAAGGGT
CGGGTTGGGAGTGTCGGGCTCCTGCTGCCGCTGCTCCATCACCAACACAG
GCGGGGTACAAGGTGAGCTTACTCGCTCGTCCAGGTCCTCCTCTGCATCT
TCGTGCTCTTCGGGATAAATGATGGGCAGGGGAATGGTGACGGCTGGGGG
CGGAAGGACAGGGACGGAGGCAGGCGCACGGTGATAATTATTATTAGCAC
GCGCACGATGATAGTTATTGGCAGCACCGTCGCTGCGGCCGTCGCCGCCG
CCGCGGGAGAAAAGACCATTGATAGGCATCGGGACTGGCCGCTCGCTAGG
GTCTTATCATGTGTATCAGTGTCCTGTGGCGTGGGTGCTG

protein sequence of jgi.p|Nanoce1779_2|586714

>mRNA_4148-protein ID=mRNA_4148-protein|Name=jgi.p|Nanoce1779_2|586714|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MPLSPPFDFISESDRPVHPPFLSLPVSSITPSTPPPPLSPPPPPPPFPPF
LTPLNKGNSTSSRTSNNAYLNRGSTDPSPSTPSINAPIPFPLSEANTHMP
AHVRNRSRRARWLQRRMGGRTGGREEEEEEGKLSRLVKGERRSWRSRKEW
RKRRLEGLSMRWRRVRRMGSAREEAREGARTASMRGRIPSQMTTSSVWVR
AMFRRVSRARRRKKSSSSSSSSSSSSRCCCCLRTVALSLCPQTATRDMSS
V*

mRNA from alignment at scaffold_8:946404..949043-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4148 ID=mRNA_4148|Name=jgi.p|Nanoce1779_2|586714|organism=Nannochloropsis oceanica|type=mRNA|length=2640bp|location=Sequence derived from alignment at scaffold_8:946404..949043- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGAGAGGAGAT
ATATCTGCTACTGCCCTTGCCGCCGTCGACTAAGTGGGGGAGAGGAGAAA
GAGAGGAGGCGGTGGAGACTCCGTGGGAAGAAGTACATGCCCTTGGCACG
AAGGAGGAAGGAAGGGAAGACGGACAAATGGAGGAAGGAAAGGAGGAGGA
GGTAGGGGACATAGAGGAGGAGGAACACAAGCGCCTCAGTAATTCGGAAG
CACGCATGGAGAGAAGACGGGCATCGATACTGGAGAGCGTCGAGAAATTC
CGTACCCCTCGTATTCTTCCCCTTTTCTCTCCTCCCCCTTCGCCCATGTC
TTTTCCTGATGCTCCAACTTCCCCTGCGAAAGCCACGTCAGGAGCAGCTG
TAGCGGCGTCGCACATCTTCACCAAAGAAGGCATAGCTTGATGAGCGAGG
GCGAGGTGCCCAGGGAGGACAAGGGAGAGGACACGCATAATCTCTACGAG
AAGGGCAGTCGCTCTTCCTTGAGAAAGATCTTCGGTAGGACCGCTTACAC
AGAGGCTGGTAAGCGCCTCGAGGATGTTACATTGGAGGAGGAGGGAGAGG
AGGACGGAGAGGTAGGGGTCCAGCAAGTTGAGCGGGGGACTGCAAGAGGG
AATGAAGGAGGGGGGAGCAGGAGATGGTAGTCGATGAGGAGGAGGAGGAG
CGAAGCCGTTCCCACGCCTGTGCCCCTGCTGGCCATGGATCACCCTTTTG
TCACTCTCACTATCCATGCCTCTGTCACCCCCTTTTGACTTCATTTCCGA
AAGTGATCGGCCCGTCCACCCGCCCTTCCTCTCTCTTCCGGTATCCTCCA
TCACTCCCTCAACTCCTCCCCCTCCTCTTTCTCCTCCTCCTCCCCCCCCC
CCCTTCCCTCCCTTCCTTACTCCCCTTAATAAAGGCAACAGCACATCTTC
CAGGACTTCAAACAACGCGTATCTCAACAGGGGGTCCACAGATCCATCGC
CCAGCACTCCTTCAATCAACGCCCCTATACCCTTCCCCCTCTCTGAAGCC
AATACACACATGCCTGCCCATGTCCGCAACAGGAGTCGCAGGGCCCGCTG
GCTGCAACGGAGGATGGGAGGGAGGACGGGAGGGAGGGAGGAAGAGGAGG
AGGAGGGGAAATTGTCCAGGTTGGTGAAGGGGGAGAGGAGGAGTTGGAGG
TCGAGGAAGGAATGGAGGAAGCGGCGACTGGAAGGGTTGTCGATGAGGTG
GAGGAGGGTGAGGAGGATGGGCTCGGCAAGGGAGGAAGCGAGGGAGGGAG
CGAGGACAGCTTCGATGAGGGGTCGGATACCGTCACAAATGACAACGAGC
TCGGTGTGGGTGAGGGCGATGTTTCGCAGGGTTTCTAGAGCAAGACGGCG
GAAGAAATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGATGCT
GCTGCTGCTTGCGTACGGTAGCGCTTTCCTTGTGCCCACAGACAGCGACC
AGAGACATGAGTAGCGTGTAGACAGCAGATACGGCTGGGCTGTGATCGGA
GGAGGAGACACGGGGATACCTTCCTTGGTGGTGGAGGGCAAAGATCGCAT
GTGTCACTTTAAGGGCTTCGAGCCTCTCGAACGCAGTGAGCTTTTCGCCA
CTCTCTTCGTGGTTGACATCCTCATCGTGATGATGGTACTGATAGTGAAA
CCGTGTAGCAGGGCTTCTTTTCCCTCCTTCCCTCCTTCTCTCCCTTCCTC
GTCCCCCTCCTCCTCGCTCCAAAGAACGCATGACCAAGACATCTAATCGG
AGCCGATCAAAGCATTCCAACCTATGCAAAGCCGCTGCTGGCCCCCTTGC
TGCCGTTAAAAGAATGTACCGCGTCGCCCGCAGAGCCAGCGCTCGGAGCG
TGGCCCCGTCATTGCCACTGCTGCTGTTGCTGTTGTTGGCAATGCTATTG
TTGGATCTGCGGTAGCAAGTCCAGGACAAAGCCAGGAGAGCCCGCATGCT
TTCCAGAAGCACGGATACATCCACTGCTACCATTATTTTAGTGCTGCTGT
CGCTGCTACTGTCGGGAGTGGTGCTTATGGTGGTGGAGAAGGAGGGGGAG
GTGGACAAAGAAAGGAGGGCCTTGGTGAGCGCACCTAGCCCCTCTAAAAC
CGTGCGCAGCTCGCCCGAGTCCCGGTCGTGCGCCTCGCGTGGCGGCTTCG
ACAGTTTTTGGAGGTATATATTTTGTGCAGTGGCAGTGTCATCGGGGACG
ACGAGGAAGAGGGCATTGAGCTCCGCCTTGCTCATGATTAAATTAAGGGT
CGGGTTGGGAGTGTCGGGCTCCTGCTGCCGCTGCTCCATCACCAACACAG
GCGGGGTACAAGGTGAGCTTACTCGCTCGTCCAGGTCCTCCTCTGCATCT
TCGTGCTCTTCGGGATAAATGATGGGCAGGGGAATGGTGACGGCTGGGGG
CGGAAGGACAGGGACGGAGGCAGGCGCACGGTGATAATTATTATTAGCAC
GCGCACGATGATAGTTATTGGCAGCACCGTCGCTGCGGCCGTCGCCGCCG
CCGCGGGAGAAAAGACCATTGATAGGCATCGGGACTGGCCGCTCGCTAGG
GTCTTATCATGTGTATCAGTGTCCTGTGGCGTGGGTGCTG

Coding sequence (CDS) from alignment at scaffold_8:946404..949043-

>mRNA_4148 ID=mRNA_4148|Name=jgi.p|Nanoce1779_2|586714|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_8:946404..949043- (Nannochloropsis oceanica)
ATGCCTCTGTCACCCCCTTTTGACTTCATTTCCGAAAGTGATCGGCCCGT
CCACCCGCCCTTCCTCTCTCTTCCGGTATCCTCCATCACTCCCTCAACTC
CTCCCCCTCCTCTTTCTCCTCCTCCTCCCCCCCCCCCCTTCCCTCCCTTC
CTTACTCCCCTTAATAAAGGCAACAGCACATCTTCCAGGACTTCAAACAA
CGCGTATCTCAACAGGGGGTCCACAGATCCATCGCCCAGCACTCCTTCAA
TCAACGCCCCTATACCCTTCCCCCTCTCTGAAGCCAATACACACATGCCT
GCCCATGTCCGCAACAGGAGTCGCAGGGCCCGCTGGCTGCAACGGAGGAT
GGGAGGGAGGACGGGAGGGAGGGAGGAAGAGGAGGAGGAGGGGAAATTGT
CCAGGTTGGTGAAGGGGGAGAGGAGGAGTTGGAGGTCGAGGAAGGAATGG
AGGAAGCGGCGACTGGAAGGGTTGTCGATGAGGTGGAGGAGGGTGAGGAG
GATGGGCTCGGCAAGGGAGGAAGCGAGGGAGGGAGCGAGGACAGCTTCGA
TGAGGGGTCGGATACCGTCACAAATGACAACGAGCTCGGTGTGGGTGAGG
GCGATGTTTCGCAGGGTTTCTAGAGCAAGACGGCGGAAGAAATCTTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCAGATGCTGCTGCTGCTTGCGTA
CGGTAGCGCTTTCCTTGTGCCCACAGACAGCGACCAGAGACATGAGTAGC
GTGTAG

Synonyms

Publications