jgi.p|Nanoce1779_2|586542, mRNA_4101 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586542
Unique NamemRNA_4101
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1202
Alignment locationscaffold_8:840970..842397 -

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Properties
Property NameValue
TranscriptId586628
TrackFilteredModels2
ProteinId586542
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:840970..842397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586542gene_4101Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586542mRNA_4101-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4101CDS_4101Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4101 ID=mRNA_4101|Name=jgi.p|Nanoce1779_2|586542|organism=Nannochloropsis oceanica|type=mRNA|length=1202bp
CAGTGTTTCCAACCATGGCCCTACCTCATCGCACACCACTTATTCTTGTG
ACTTCGCTCCTTGCCATGGTCGCCGTGGCGCACGGCTTTTTCCTCCGCCC
TTCGACCCTCAGAGTCAGCACGATTATGACGGCCCACCAGCAGTTAGAGC
ACTCCCCAGCCACAGGGCTCGACCGAAAGGCCGCCCTGCAACAAGGTGTT
GTACTAACATCGGTATTTCTATTTGTAGCTGGCGCATCTCCTCTCCCGGT
CCGAGCCAAGGATAACAAGCCGGCCGCACTAAGCTTTGAGGAATGTGTCT
CAAAGCTCCTGCTAAGCAAGAAGGTCCTGCAGCCCGTAGCAAAGTATATT
AAAATTGGCCAGTACGACCCCGCACGTACCAATATCAAGTATGTGACAAA
TCAGTTTCGATTGAAGAAGGCAATGGAGCGGATTGTCCTGCTGGCGTTTG
AGAAGGACGTTTCGCAGAGCAAACTTGATGAGGCAGCCGAGGTGACTGCC
GTGATTGACAATACCTTATCCCAGCTAGATTCGAGTGTCTACACGCAGAT
CTTTATTCCCACTGACGGTGAGATCAGTCCTGATGCGCTCAAGTATCAGA
AACAGGCTTTTGAATTCTATGACACTGTCTTGGACTCCATCGATAAAGTC
CTCTCCCTTGCAGGCGCTGAGGACATTTCCGCAGCCCAAAAGCTGGTTGA
TGGGACGCCCCTCCCTTCCTTCCTCTTTAAGCAGTTCGCCGACGGGCAGA
CATTCCGCCCCCCCACTCCTTAGACGTATGAGCCAGTCCAAGGGGAATCT
GTGGTTGAATTCCAGCAGCTAATTAAATTCGTTTTAATTTTAAAGAGTGA
TGCAAATGTGCCCGCACAGAAGAAACAAGCACAATTCGGAACAAGGGGCT
GTCGATTGCGTTATCCCGACGTGCTTTCCTTCTGTCGCTTTGTTGTGTGT
TTCTGTTGTTGTCGTTGTTGTCGCGCCTTCATGCCGTACAGTTGCTGCTC
TAATCTTCAAAATGGACATCCTTCTCACCTCCCGTTTCTAAAACACATGC
ACTCTCCAGTCTACTCCCTCTTCCTCCCTCCCCTTCTCTCCCTCCCTGAC
CCTTCCTTCTCTCACACCAATTCCCGATCAATCTAACGCCGCTTCTTGCT
TCCATTTCCTACACCTACTACCCCTCCTATGTCGGCAATCGTGAACGGTC
GT
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protein sequence of jgi.p|Nanoce1779_2|586542

>mRNA_4101-protein ID=mRNA_4101-protein|Name=jgi.p|Nanoce1779_2|586542|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MALPHRTPLILVTSLLAMVAVAHGFFLRPSTLRVSTIMTAHQQLEHSPAT
GLDRKAALQQGVVLTSVFLFVAGASPLPVRAKDNKPAALSFEECVSKLLL
SKKVLQPVAKYIKIGQYDPARTNIKYVTNQFRLKKAMERIVLLAFEKDVS
QSKLDEAAEVTAVIDNTLSQLDSSVYTQIFIPTDGEISPDALKYQKQAFE
FYDTVLDSIDKVLSLAGAEDISAAQKLVDGTPLPSFLFKQFADGQTFRPP
TP*
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mRNA from alignment at scaffold_8:840970..842397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4101 ID=mRNA_4101|Name=jgi.p|Nanoce1779_2|586542|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at scaffold_8:840970..842397- (Nannochloropsis oceanica)
CAGTGTTTCCAACCATGGCCCTACCTCATCGCACACCACTTATTCTTGTG
ACTTCGCTCCTTGCCATGGTCGCCGTGGCGCACGGCTTTTTCCTCCGCCC
TTCGACCCTCAGAGTCAGCACGATTATGACGGCCCACCAGCAGTTAGAGC
ACTCCCCAGCCACAGGGCTCGACCGAAAGGCCGCCCTGCAACAAGGTGTT
GTACTAACATCGGTATTTCTATTTGTAGCTGGCGCATCTCCTCTCCCGGT
CCGAGCCAAGGATAACAAGCCGGCCGCACTAAGCTTTGAGGAATGTGTCT
CAAAGCTCCTGCTAAGCAAGAAGGTCCTGCAGCCCGTAGCAAAGTATATT
AAAATTGGCCAGTACGACCCCGCACGTACCAATATCAAGTATGTGACAAA
TCAGTTTCGATTGAAGAAGGCAATGGAGCGGATTGTCCTGCTGGCGTTTG
AGAAGGACGTTTCGCAGAGCAAACTTGATGAGGCAGCCGAGGTGACTGCC
GTGATTGACAATACCTTATCCCAGCTAGATTCGAGTGTCTACACGCAGAT
CTTTATTCCCACTGACGGTGAGATCAGTCCTGATGCGCTCAAGTATCAGA
AACAGGTTCGTTTCTAGGCCTTATGATAAATATATACTGTTATTCTTTTT
GGGGGCTTGCATTTTTTGTTTTCTCTTTTCATGCTGACACTATTTTAAGT
GGCCGCAAAATGAAGCAGCATCACCCCATCTGTTTCCCTTCCTTACAGCA
GTACTCCTTTTCTCCATCCCCCGCCCTTCTTCGGGTTAACTTATCATTCA
TTCTTACCCTTCCGCCACCAAATGAACACAGGCTTTTGAATTCTATGACA
CTGTCTTGGACTCCATCGATAAAGTCCTCTCCCTTGCAGGCGCTGAGGAC
ATTTCCGCAGCCCAAAAGCTGGTTGATGGGACGCCCCTCCCTTCCTTCCT
CTTTAAGCAGTTCGCCGACGGGCAGACATTCCGCCCCCCCACTCCTTAGA
CGTATGAGCCAGTCCAAGGGGAATCTGTGGTTGAATTCCAGCAGCTAATT
AAATTCGTTTTAATTTTAAAGAGTGATGCAAATGTGCCCGCACAGAAGAA
ACAAGCACAATTCGGAACAAGGGGCTGTCGATTGCGTTATCCCGACGTGC
TTTCCTTCTGTCGCTTTGTTGTGTGTTTCTGTTGTTGTCGTTGTTGTCGC
GCCTTCATGCCGTACAGTTGCTGCTCTAATCTTCAAAATGGACATCCTTC
TCACCTCCCGTTTCTAAAACACATGCACTCTCCAGTCTACTCCCTCTTCC
TCCCTCCCCTTCTCTCCCTCCCTGACCCTTCCTTCTCTCACACCAATTCC
CGATCAATCTAACGCCGCTTCTTGCTTCCATTTCCTACACCTACTACCCC
TCCTATGTCGGCAATCGTGAACGGTCGT
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Coding sequence (CDS) from alignment at scaffold_8:840970..842397-

>mRNA_4101 ID=mRNA_4101|Name=jgi.p|Nanoce1779_2|586542|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_8:840970..842397- (Nannochloropsis oceanica)
GCTTTTGAATTCTATGACACTGTCTTGGACTCCATCGATAAAGTCCTCTC
CCTTGCAGGCGCTGAGGACATTTCCGCAGCCCAAAAGCTGGTTGATGGGA
CGCCCCTCCCTTCCTTCCTCTTTAAGCAGTTCGCCGACGGGCAGACATTC
CGCCCCCCCACTCCTTAGATGGCCCTACCTCATCGCACACCACTTATTCT
TGTGACTTCGCTCCTTGCCATGGTCGCCGTGGCGCACGGCTTTTTCCTCC
GCCCTTCGACCCTCAGAGTCAGCACGATTATGACGGCCCACCAGCAGTTA
GAGCACTCCCCAGCCACAGGGCTCGACCGAAAGGCCGCCCTGCAACAAGG
TGTTGTACTAACATCGGTATTTCTATTTGTAGCTGGCGCATCTCCTCTCC
CGGTCCGAGCCAAGGATAACAAGCCGGCCGCACTAAGCTTTGAGGAATGT
GTCTCAAAGCTCCTGCTAAGCAAGAAGGTCCTGCAGCCCGTAGCAAAGTA
TATTAAAATTGGCCAGTACGACCCCGCACGTACCAATATCAAGTATGTGA
CAAATCAGTTTCGATTGAAGAAGGCAATGGAGCGGATTGTCCTGCTGGCG
TTTGAGAAGGACGTTTCGCAGAGCAAACTTGATGAGGCAGCCGAGGTGAC
TGCCGTGATTGACAATACCTTATCCCAGCTAGATTCGAGTGTCTACACGC
AGATCTTTATTCCCACTGACGGTGAGATCAGTCCTGATGCGCTCAAGTAT
CAGAAACAGGCTTTTGAATTCTATGACACTGTCTTGGACTCCATCGATAA
AGTCCTCTCCCTTGCAGGCGCTGAGGACATTTCCGCAGCCCAAAAGCTGG
TTGATGGGACGCCCCTCCCTTCCTTCCTCTTTAAGCAGTTCGCCGACGGG
CAGACATTCCGCCCCCCCACTCCTTAGATGGCCCTACCTCATCGCACACC
ACTTATTCTTGTGACTTCGCTCCTTGCCATGGTCGCCGTGGCGCACGGCT
TTTTCCTCCGCCCTTCGACCCTCAGAGTCAGCACGATTATGACGGCCCAC
CAGCAGTTAGAGCACTCCCCAGCCACAGGGCTCGACCGAAAGGCCGCCCT
GCAACAAGGTGTTGTACTAACATCGGTATTTCTATTTGTAGCTGGCGCAT
CTCCTCTCCCGGTCCGAGCCAAGGATAACAAGCCGGCCGCACTAAGCTTT
GAGGAATGTGTCTCAAAGCTCCTGCTAAGCAAGAAGGTCCTGCAGCCCGT
AGCAAAGTATATTAAAATTGGCCAGTACGACCCCGCACGTACCAATATCA
AGTATGTGACAAATCAGTTTCGATTGAAGAAGGCAATGGAGCGGATTGTC
CTGCTGGCGTTTGAGAAGGACGTTTCGCAGAGCAAACTTGATGAGGCAGC
CGAGGTGACTGCCGTGATTGACAATACCTTATCCCAGCTAGATTCGAGTG
TCTACACGCAGATCTTTATTCCCACTGACGGTGAGATCAGTCCTGATGCG
CTCAAGTATCAGAAACAG
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Synonyms
Publications