jgi.p|Nanoce1779_2|444627, mRNA_4848 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|444627
Unique NamemRNA_4848
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1074
Alignment locationscaffold_9:769491..770895 -

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Properties
Property NameValue
TranscriptId444713
TrackFilteredModels2
ProteinId444627
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:769491..770895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|444627gene_4848Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|444627mRNA_4848-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4848CDS_4848Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4848 ID=mRNA_4848|Name=jgi.p|Nanoce1779_2|444627|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
TTCGAGGCGGGCGGGCTGCGACCCGGGTTGACTCATCCACACCATCCCTC
CGTACATGCATCTGCACGCGCCGTCTACAGGAACGTCCCCTTTTTCTTCA
GCATGCAGCTGTCGTTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTA
GCCCTCCTCCTCGTGGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCG
CCCCCTGCACATGTCCCAACAGCAGTCACATCAGTCGCATCAACGCAGCA
CGCCTTCCACCTCATTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGT
ATTGTGGGCGGGGCGGCCGCTGCATTCGCCAGTACCTTCACCCTGACCAC
CGCCCCGCCAAAGGTCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCC
CCGATTTCACCCTGCCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGAC
CTGGTCAAGACCAAGAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTT
CACGAGCTCATGCACGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATA
GTTACAACAAGCTAAATGCACAGATTGTGGGGGTGTCGGTCGATGAATCG
ACTAAGCAAACGGACTTCAAGTCCGAGTGTGGGTTAGACTTTATTTTGCT
GAGCGATAAGGGTGCTAAGGTCTCGGAGGCCTATGGCTCAGCTTTAGACA
TTCCGTTTCTCGGCCGTTTTTCCAACCGGCAAACCTACATCATCTCCCCG
GAGGGCAAGTTGGTGAAAGTCTTCACTAACGTTGAGTCCAAGGTGAAGCG
GCATTCGGAGGAGGTCCTGGAGGCGCTCAAGGCACTTCAGGCGTAGACGT
GAGATCTAGTGATGTTTCCCGAGACAACTCAGTTAGTCACAAAGAGGGAG
AAGGGACGGATATGAAGCAAAAACCAAAAGAGTGAAACAGAGGGGAGATG
ATTATGGATATATGTGTCACTTATTAGGGTTGAAAGGGACTAAGTGCCTG
TGTGAAACGCGTCTGGGGTGGAAGGACGGGAGGATTTGAGTCTGCTTTCA
TTCCTTCTTCATTTTCCCCCATAT
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protein sequence of jgi.p|Nanoce1779_2|444627

>mRNA_4848-protein ID=mRNA_4848-protein|Name=jgi.p|Nanoce1779_2|444627|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MQLSLSSSLSSSSTLLALLLVAAMACLSHGYVRPLHMSQQQSHQSHQRST
PSTSLGMDRRDLLSKGIVGGAAAAFASTFTLTTAPPKVRADVPAEGIEAP
DFTLPSSLGKSLSLADLVKTKKYTVLYFFPQVFTSSCTLEAKAFQRDIDS
YNKLNAQIVGVSVDESTKQTDFKSECGLDFILLSDKGAKVSEAYGSALDI
PFLGRFSNRQTYIISPEGKLVKVFTNVESKVKRHSEEVLEALKALQA*
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mRNA from alignment at scaffold_9:769491..770895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4848 ID=mRNA_4848|Name=jgi.p|Nanoce1779_2|444627|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at scaffold_9:769491..770895- (Nannochloropsis oceanica)
TTCGAGGCGGGCGGGCTGCGACCCGGGTTGACTCATCCACACCATCCCTC
CGTACATGCATCTGCACGCGCCGTCTACAGGAACGTCCCCTTTTTCTTCA
GCATGCAGCTGTCGTTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTA
GCCCTCCTCCTCGTGGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCG
CCCCCTGCACATGTCCCAACAGCAGTCACATCAGTCGCATCAACGCAGCA
CGCCTTCCACCTCATTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGT
ATTGTGGGCGGGGCGGCCGCTGCATTCGCCAGTACCTTCACCCTGACCAC
CGCCCCGCCAAAGGTCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCC
CCGATTTCACCCTGCCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGAC
CTGGTCAAGACCAAGAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTT
CACGAGCTCATGCACGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATA
GTTACAACAAGCTAAATGCACAGATTGTGGGGGTGTCGGTCGATGAATCG
ACTAAGCAAACGGACTTCAAGTCCGAGTGTGGGTTAGACTTTATTTGTAC
GTTATTTCGAGAACAGGGATGGTTTGGGAGTAATGGGAGGATGGGAAAAC
AGGGAGTTTGGGACGGATGGAGGAGAAAGGGATGGCGATAGATGGTAGTT
GACCGGGAAGGAAGGATAGATATGCTGAATCTTCTTCCATTCCTATCAAT
ATGTAAACACAGTGCTGAGCGATAAGGGTGCTAAGGTCTCGGAGGCCTAT
GGCTCAGCTTTAGACATTCCGTTTCTCGGCCGTTTTTCCAACCGGCAAAC
CTACATCATCTCCCCGGTACGTGTTTGTCTCTTTTGAATTTCCTACCTCG
TCTCGAAACAAGGATGGATAAGCATTCATGCCTCGACGGGGAATGACACT
CTGCTGGCGTTCACTTGCAACCTTCTCTCACCGCCCGCCCTCCCTCCCTC
CCTCCCTTCCTGACTCCTCCCTTCCTTACAGGAGGGCAAGTTGGTGAAAG
TCTTCACTAACGTTGAGTCCAAGGTGAAGCGGCATTCGGAGGAGGTCCTG
GAGGCGCTCAAGGCACTTCAGGCGTAGACGTGAGATCTAGTGATGTTTCC
CGAGACAACTCAGTTAGTCACAAAGAGGGAGAAGGGACGGATATGAAGCA
AAAACCAAAAGAGTGAAACAGAGGGGAGATGATTATGGATATATGTGTCA
CTTATTAGGGTTGAAAGGGACTAAGTGCCTGTGTGAAACGCGTCTGGGGT
GGAAGGACGGGAGGATTTGAGTCTGCTTTCATTCCTTCTTCATTTTCCCC
CATAT
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Coding sequence (CDS) from alignment at scaffold_9:769491..770895-

>mRNA_4848 ID=mRNA_4848|Name=jgi.p|Nanoce1779_2|444627|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_9:769491..770895- (Nannochloropsis oceanica)
GAGGGCAAGTTGGTGAAAGTCTTCACTAACGTTGAGTCCAAGGTGAAGCG
GCATTCGGAGGAGGTCCTGGAGGCGCTCAAGGCACTTCAGGCGTAGTGCT
GAGCGATAAGGGTGCTAAGGTCTCGGAGGCCTATGGCTCAGCTTTAGACA
TTCCGTTTCTCGGCCGTTTTTCCAACCGGCAAACCTACATCATCTCCCCG
ATGCAGCTGTCGTTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTAGC
CCTCCTCCTCGTGGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCGCC
CCCTGCACATGTCCCAACAGCAGTCACATCAGTCGCATCAACGCAGCACG
CCTTCCACCTCATTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGTAT
TGTGGGCGGGGCGGCCGCTGCATTCGCCAGTACCTTCACCCTGACCACCG
CCCCGCCAAAGGTCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCCCC
GATTTCACCCTGCCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGACCT
GGTCAAGACCAAGAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTTCA
CGAGCTCATGCACGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATAGT
TACAACAAGCTAAATGCACAGATTGTGGGGGTGTCGGTCGATGAATCGAC
TAAGCAAACGGACTTCAAGTCCGAGTGTGGGTTAGACTTTATTTGAGGGC
AAGTTGGTGAAAGTCTTCACTAACGTTGAGTCCAAGGTGAAGCGGCATTC
GGAGGAGGTCCTGGAGGCGCTCAAGGCACTTCAGGCGTAGTGCTGAGCGA
TAAGGGTGCTAAGGTCTCGGAGGCCTATGGCTCAGCTTTAGACATTCCGT
TTCTCGGCCGTTTTTCCAACCGGCAAACCTACATCATCTCCCCGATGCAG
CTGTCGTTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTAGCCCTCCT
CCTCGTGGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCGCCCCCTGC
ACATGTCCCAACAGCAGTCACATCAGTCGCATCAACGCAGCACGCCTTCC
ACCTCATTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGTATTGTGGG
CGGGGCGGCCGCTGCATTCGCCAGTACCTTCACCCTGACCACCGCCCCGC
CAAAGGTCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCCCCGATTTC
ACCCTGCCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGACCTGGTCAA
GACCAAGAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTTCACGAGCT
CATGCACGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATAGTTACAAC
AAGCTAAATGCACAGATTGTGGGGGTGTCGGTCGATGAATCGACTAAGCA
AACGGACTTCAAGTCCGAGTGTGGGTTAGACTTTATTTGAGGGCAAGTTG
GTGAAAGTCTTCACTAACGTTGAGTCCAAGGTGAAGCGGCATTCGGAGGA
GGTCCTGGAGGCGCTCAAGGCACTTCAGGCGTAGTGCTGAGCGATAAGGG
TGCTAAGGTCTCGGAGGCCTATGGCTCAGCTTTAGACATTCCGTTTCTCG
GCCGTTTTTCCAACCGGCAAACCTACATCATCTCCCCGATGCAGCTGTCG
TTGTCGTCATCCCTATCCTCCTCCTCCACTCTCCTAGCCCTCCTCCTCGT
GGCCGCCATGGCCTGCCTCTCCCACGGCTATGTCCGCCCCCTGCACATGT
CCCAACAGCAGTCACATCAGTCGCATCAACGCAGCACGCCTTCCACCTCA
TTGGGCATGGACCGCCGTGATCTTTTGAGCAAGGGTATTGTGGGCGGGGC
GGCCGCTGCATTCGCCAGTACCTTCACCCTGACCACCGCCCCGCCAAAGG
TCCGCGCTGACGTGCCCGCCGAGGGGATCGAAGCCCCCGATTTCACCCTG
CCCTCGAGCTTGGGCAAGTCCTTGTCTCTGGCAGACCTGGTCAAGACCAA
GAAATACACGGTGCTGTATTTCTTCCCTCAGGTCTTCACGAGCTCATGCA
CGTTAGAGGCCAAGGCATTCCAGCGAGACATAGATAGTTACAACAAGCTA
AATGCACAGATTGTGGGGGTGTCGGTCGATGAATCGACTAAGCAAACGGA
CTTCAAGTCCGAGTGTGGGTTAGACTTTATTT
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Synonyms
Publications