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Properties
Property Name | Value |
TranscriptId | 627082 |
Track | FilteredModels2 |
ProteinId | 626996 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:1266686..1268629 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1697 ID=mRNA_1697|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp TTGGTGTTGGCGAGTGATGTGCGACTCGGTGGGAGCTCCTCCACACCCCT TGCCCTCCCCATTCACCCCTGTAAAATGGCCCACGCTCGCACTCAATTTA CGATACCCACACCACATACAGATCTAGGGCTAGCGCGTGCTGCTGCCACG CAGCCGGTAGAGGAGGCACCAGCCAACGCCGGGAGCCAGGAGACGGAGAG GCATCATGATAATCACTTTGTTCCACCGATGCAGCAGCAACCGCACACAC TCCAGCTTCATGCGCACCGGCATTCTCTTTCTCACCCTGAGCGCATTTGG GGCGCTCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTGACTGCCCCAC CATCCTCAAGTACCAGCGCCAGACCGCCATCATCATCGACAGCCTCCTCC TCTTCTCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCTTATCCCCGTC ATCTGCTACCAGAAGAAGCGGCAGAGACATCCATGAAGTACCATGGGGTG AAATCTTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGAAGACATGCGT GATTTACAAGTATACATGCAAGATACAATAAAAGCGCAGCAGGCAGCACA GGCGGAGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGGAGAAGATTGG ATGCAGGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGCAGAAGGAGCT GGAACGGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGTCTGCTGGAGA AGGAGAGGATAGTGAGGGGGAGGAGATGGACGACGCGCCATCACCACGAA CGACATTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGAGCAAACCAAA ATCATTGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATGAAAAACTTGC GGCGGGGGATATAGAGGGCGCATACAGTCAGTACGAAGAGGCCCTCATGG TACTAGAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAGAAGGTGTGCG CAGTCGTGTCAATTGAACATGGCAGTGGTCGAGACCAAGAGATCGGACTA CGCTAAGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGCCTTGAGAGTG GAAGTGAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTGGCAATGTCTG ACCAAGCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGGAGGAAGCGTT TAAGGACTTGGTGCAGGCAAATCAACTCAAGCCCAACGACCAAAAAGTTG CGGCGGAATTGGAGGAAATGGGAGGGACCCCTGTGACGCCTCCGCCGCAG GCTTTCTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTGAGTCGCCCTT GGATGCGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGATATTCTTGGCG GTCTGCTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGGGGGAGCAGGA GGGGAAGGAGATATTTTGGGGGGGCTGATGGGTAACTATTTGTCGTCCAT GGGCTCAAGGATGGTGGATATGTTGGAGCAGCCGGAGACGTTGACGATGG TGTGCACCTTGTTAAAAAAACTTCAACCCGATTATCTAGAGTCCCTGGCC GTGACCGCTAACCTCCCCGTGTCCAAGGGGACTATCAGATGGATCCATGA GAAGGCTACAGGTCTTGAGCCACGGGATATCAAGCGGTGGGTGAGTAGGG GAAAATGGGCCCATTCATCCTACGTGTCCACGAAGAGGACATGGGAGAGT GTGAAGCCCCTGGTGAGACCCACCAGGCTAGTGATGACGTATTGCTTGGT CTTGAGGTGGATGGCAGCGTGTCTGCTGGGGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|626996 >mRNA_1697-protein ID=mRNA_1697-protein|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp MIITLFHRCSSNRTHSSFMRTGILFLTLSAFGALSFSTTLCRAAVTAPPS SSTSARPPSSSTASSSSPLSSSSSSSSPLSPSSATRRSGRDIHEVPWGEI FSALQDSNLGAEDMRDLQVYMQDTIKAQQAAQAEEEGRKRRRRRRRRLDA GETTAAVGVEGAEGAGTEESLATPVTTASAGEGEDSEGEEMDDAPSPRTT FEWKSTIAAFKEQTKIIERSISLRKDGNEKLAAGDIEGAYSQYEEALMVL EKGTVVQTGRTRRCAQSCQLNMAVVETKRSDYAKALGMYSTVLAGLESGS EGGKGDDKAVRWQCLTKRARIARRMGRMEEAFKDLVQANQLKPNDQKVAA ELEEMGGTPVTPPPQAFCSSFLPSAAGGESPLDALLGGEGGGGADILGGL LGSLGSGAGGLGGAGGEGDILGGLMGNYLSSMGSRMVDMLEQPETLTMVC TLLKKLQPDYLESLAVTANLPVSKGTIRWIHEKATGLEPRDIKRWVSRGK WAHSSYVSTKRTWESVKPLVRPTRLVMTYCLVLRWMAACLLG* back to topmRNA from alignment at scaffold_1:1266686..1268629+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1697 ID=mRNA_1697|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at scaffold_1:1266686..1268629+ (Nannochloropsis oceanica) TTGGTGTTGGCGAGTGATGTGCGACTCGGTGGGAGCTCCTCCACACCCCT
TGCCCTCCCCATTCACCCCTGTAAAATGGCCCACGCTCGCACTCAATTTA
CGATACCCACACCACATACAGATCTAGGGCTAGCGCGTGCTGCTGCCACG
CAGCCGGTAGAGGAGGCACCAGCCAACGCCGGGAGCCAGGAGACGGAGAG
GCATCATGATAATCACTTTGTTCCACCGATGCAGCAGCAACCGCACACAC
TCCAGCTTCATGCGCACCGGCATTCTCTTTCTCACCCTGAGCGCATTTGG
GGCGCTCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTGACTGCCCCAC
CATCCTCAAGGTATGTACTGATAGTGCGTCGACACTATCCACCCCATACC
TTCTCCTAGTGATGCCCCTCCTCCCTCCTCTCTTGCCTCACATGTCCTGA
ACACGACCCTAAAATAACAGTACCAGCGCCAGACCGCCATCATCATCGAC
AGCCTCCTCCTCTTCTCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCT
TATCCCCGTCATCTGCTACCAGAAGAAGCGGCAGAGACATCCATGAAGTA
CCATGGGGTGAAATCTTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGA
AGACATGCGTGATTTACAAGTATACATGCAAGATACAATAAAAGCGCAGC
AGGCAGCACAGGCGGAGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGG
AGAAGATTGGATGCAGGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGC
AGAAGGAGCTGGAACGGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGT
CTGCTGGAGAAGGAGAGGATAGTGAGGGGGAGGAGATGGACGACGCGCCA
TCACCACGAACGACATTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGA
GCAAACCAAAATCATTGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATG
AAAAACTTGCGGCGGGGGATATAGAGGGCGCATACAGTCAGTACGAAGAG
GCCCTCATGGTACTAGAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAG
AAGGTGTGCGCAGTCGTGTCAATTGAACATGGCAGTGGTCGAGACCAAGA
GATCGGACTACGCTAAGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGC
CTTGAGAGTGGAAGTGAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTG
GCAATGTCTGACCAAGCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGG
AGGAAGCGTTTAAGGACTTGGTGCAGGCAAATCAACTCAAGCCCAACGAC
CAAAAAGTTGCGGCGGAATTGGAGGAAATGGGAGGGACCCCTGTGACGCC
TCCGCCGCAGGCTTTCTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTG
AGTCGCCCTTGGATGCGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGAT
ATTCTTGGCGGTCTGCTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGG
GGGAGCAGGAGGGGAAGGAGATATTTTGGGGGGGCTGATGGGTAACTATT
TGTCGTCCATGGGCTCAAGGATGGTGGATATGTTGGAGCAGCCGGAGACG
TTGACGATGGTGTGCACCTTGTTAAAAAAACTTCAACCCGATTATCTAGA
GTCCCTGGCCGTGACCGCTAACCTCCCCGTGTCCAAGGGGACTATCAGAT
GGATCCATGAGAAGGCTACAGGTCTTGAGCCACGGGATATCAAGCGGTGG
GTGAGTAGGGGAAAATGGGCCCATTCATCCTACGTGTCCACGAAGAGGAC
ATGGGAGAGTGTGAAGCCCCTGGTGAGACCCACCAGGCTAGTGATGACGT
ATTGCTTGGTCTTGAGGTGGATGGCAGCGTGTCTGCTGGGGTAG back to topCoding sequence (CDS) from alignment at scaffold_1:1266686..1268629+ >mRNA_1697 ID=mRNA_1697|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_1:1266686..1268629+ (Nannochloropsis oceanica) ATGATAATCACTTTGTTCCACCGATGCAGCAGCAACCGCACACACTCCAG CTTCATGCGCACCGGCATTCTCTTTCTCACCCTGAGCGCATTTGGGGCGC TCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTGACTGCCCCACCATCC TCAAGTACCAGCGCCAGACCGCCATCATCATCGACAGCCTCCTCCTCTTC TCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCTTATCCCCGTCATCTG CTACCAGAAGAAGCGGCAGAGACATCCATGAAGTACCATGGGGTGAAATC TTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGAAGACATGCGTGATTT ACAAGTATACATGCAAGATACAATAAAAGCGCAGCAGGCAGCACAGGCGG AGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGGAGAAGATTGGATGCA GGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGCAGAAGGAGCTGGAAC GGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGTCTGCTGGAGAAGGAG AGGATAGTGAGGGGGAGGAGATGGACGACGCGCCATCACCACGAACGACA TTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGAGCAAACCAAAATCAT TGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATGAAAAACTTGCGGCGG GGGATATAGAGGGCGCATACAGTCAGTACGAAGAGGCCCTCATGGTACTA GAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAGAAGGTGTGCGCAGTC GTGTCAATTGAACATGGCAGTGGTCGAGACCAAGAGATCGGACTACGCTA AGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGCCTTGAGAGTGGAAGT GAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTGGCAATGTCTGACCAA GCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGGAGGAAGCGTTTAAGG ACTTGGTGCAGGCAAATCAACTCAAGCCCAACGACCAAAAAGTTGCGGCG GAATTGGAGGAAATGGGAGGGACCCCTGTGACGCCTCCGCCGCAGGCTTT CTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTGAGTCGCCCTTGGATG CGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGATATTCTTGGCGGTCTG CTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGGGGGAGCAGGAGGGGA AGGAGATATTTTGGGGGGGCTGATGGGTAACTATTTGTCGTCCATGGGCT CAAGGATGGTGGATATGTTGGAGCAGCCGGAGACGTTGACGATGGTGTGC ACCTTGTTAAAAAAACTTCAACCCGATTATCTAGAGTCCCTGGCCGTGAC CGCTAACCTCCCCGTGTCCAAGGGGACTATCAGATGGATCCATGAGAAGG CTACAGGTCTTGAGCCACGGGATATCAAGCGGTGGGTGAGTAGGGGAAAA TGGGCCCATTCATCCTACGTGTCCACGAAGAGGACATGGGAGAGTGTGAA GCCCCTGGTGAGACCCACCAGGCTAGTGATGACGTATTGCTTGGTCTTGA GGTGGATGGCAGCGTGTCTGCTGGGGTAGATGATAATCACTTTGTTCCAC CGATGCAGCAGCAACCGCACACACTCCAGCTTCATGCGCACCGGCATTCT CTTTCTCACCCTGAGCGCATTTGGGGCGCTCTCCTTCTCGACCACCTTGT GCCGAGCCGCCGTGACTGCCCCACCATCCTCAAGTACCAGCGCCAGACCG CCATCATCATCGACAGCCTCCTCCTCTTCTCCCTTGTCCTCCTCCTCCTC TTCCTCCTCCCCCTTATCCCCGTCATCTGCTACCAGAAGAAGCGGCAGAG ACATCCATGAAGTACCATGGGGTGAAATCTTTAGTGCATTGCAAGACAGT AATTTAGGAGCAGAAGACATGCGTGATTTACAAGTATACATGCAAGATAC AATAAAAGCGCAGCAGGCAGCACAGGCGGAGGAGGAGGGTAGAAAGAGGA GGAGGAGGAGACGGAGAAGATTGGATGCAGGAGAGACGACAGCAGCAGTA GGAGTAGAAGGAGCAGAAGGAGCTGGAACGGAGGAAAGTTTAGCAACTCC GGTAACCACAGCGTCTGCTGGAGAAGGAGAGGATAGTGAGGGGGAGGAGA TGGACGACGCGCCATCACCACGAACGACATTTGAGTGGAAGAGCACTATT GCCGCTTTCAAGGAGCAAACCAAAATCATTGAGCGTTCGATCTCCCTTCG CAAGGACGGCAATGAAAAACTTGCGGCGGGGGATATAGAGGGCGCATACA GTCAGTACGAAGAGGCCCTCATGGTACTAGAAAAAGGCACGGTCGTGCAA ACGGGAAGGACGAGAAGGTGTGCGCAGTCGTGTCAATTGAACATGGCAGT GGTCGAGACCAAGAGATCGGACTACGCTAAGGCCCTGGGAATGTATAGTA CGGTGTTGGCAGGCCTTGAGAGTGGAAGTGAGGGGGGAAAGGGGGACGAC AAAGCGGTGCGCTGGCAATGTCTGACCAAGCGGGCCAGAATAGCGAGGAG GATGGGGAGGATGGAGGAAGCGTTTAAGGACTTGGTGCAGGCAAATCAAC TCAAGCCCAACGACCAAAAAGTTGCGGCGGAATTGGAGGAAATGGGAGGG ACCCCTGTGACGCCTCCGCCGCAGGCTTTCTGTTCTTCCTTTTTGCCGAG CGCGGCAGGGGGTGAGTCGCCCTTGGATGCGTTGCTCGGGGGAGAGGGAG GAGGAGGGGCGGATATTCTTGGCGGTCTGCTGGGATCACTGGGAAGTGGG GCAGGAGGACTGGGGGGAGCAGGAGGGGAAGGAGATATTTTGGGGGGGCT GATGGGTAACTATTTGTCGTCCATGGGCTCAAGGATGGTGGATATGTTGG AGCAGCCGGAGACGTTGACGATGGTGTGCACCTTGTTAAAAAAACTTCAA CCCGATTATCTAGAGTCCCTGGCCGTGACCGCTAACCTCCCCGTGTCCAA GGGGACTATCAGATGGATCCATGAGAAGGCTACAGGTCTTGAGCCACGGG ATATCAAGCGGTGGGTGAGTAGGGGAAAATGGGCCCATTCATCCTACGTG TCCACGAAGAGGACATGGGAGAGTGTGAAGCCCCTGGTGAGACCCACCAG GCTAGTGATGACGTATTGCTTGGTCTTGAGGTGGATGGCAGCGTGTCTGC TGGGGTAG back to top
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