jgi.p|Nanoce1779_2|588933, mRNA_4383 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588933
Unique Name	mRNA_4383
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	907
Alignment location	scaffold_10:455135..456311 +

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Properties


Property Name	Value
TranscriptId	589019
Track	FilteredModels2
ProteinId	588933

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:455135..456311 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588933	gene_4383	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588933	mRNA_4383-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4383	CDS_4383	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:455135..456311+
coding sequence from alignment at scaffold_10:455135..456311+

mRNA sequence

>mRNA_4383 ID=mRNA_4383|Name=jgi.p|Nanoce1779_2|588933|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
AGACCTACACAGGCATATCTCTCTCTTTTTTGCAGCTATTGAAATTTGCC
GGCATGTTCAAGCTTGTTTCCATCCTCGGCGTGGCCGGCTTCATGCAAGC
CGTCGCCTTGCCGTTCGGTTTGGGAAAACTCGCTTTCTTTTGCCTGGGCA
TCCAGTGGCTGGCTTTCATTCCCGCCTTCAAATGGAAGACGGAGTTTTTC
TACGACTTGACCGGTTCCCTGACTTTCCTTGCCACCATATTTTTGAGTCT
GTATGCCGGCGCATGGCCTCCACACCCCCGCCAACAGATGGCCTCGCTCC
TTATTATGGTGTGGGCGTTTCGATTGGGTTATTTTTTGTTTACCCGCATC
ATACAGCATGGCAAGGACTCGCGTTTTGACACTGTGAAGCACGATGCGTT
GTTGTTTCTTCAATATTGGAGTGTGCAGGGATTGTGGGTATTCTTGACAT
GCTTGCCTGTTTTAATCTGTGCGACGAAGAAAGGGGAGGGAGTGCGTAAC
CCAGCGTGGCCTATTCCAAGCGATTTAGTGGGGATGCTTGTGTTTTTGGT
AGGCATGGGCGTGGAGATGGGGGCGGATTTTCAGAAGTACCAATGGCAGA
ACGACTGGCAGCACCGCGACGAATTCATCAATACGGGCCTGTGGTCTTGG
TCGAGGCATCCGAATTACGCGGGGGAAATGACGTTGCACCTTGGAGTGTT
CCTGTTGGCTTCTGGATCGTACACCCGACCGTTGGAATGGGTGTGCGCGG
CCATGGGGCCCACGTTCATTGTTTTGTTATTGTACAAGGTTAGCCTGCCC
ATGCTGGAGAAAAGGGCAAATGCCAGGTGGAAGGATAATAAGATGTATAA
GGTGTATATGCAGCGGACACCGGCGATTCTCCCAGGGGTGCCCGAGTGGT
TCTAAGA

protein sequence of jgi.p|Nanoce1779_2|588933

>mRNA_4383-protein ID=mRNA_4383-protein|Name=jgi.p|Nanoce1779_2|588933|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MFKLVSILGVAGFMQAVALPFGLGKLAFFCLGIQWLAFIPAFKWKTEFFY
DLTGSLTFLATIFLSLYAGAWPPHPRQQMASLLIMVWAFRLGYFLFTRII
QHGKDSRFDTVKHDALLFLQYWSVQGLWVFLTCLPVLICATKKGEGVRNP
AWPIPSDLVGMLVFLVGMGVEMGADFQKYQWQNDWQHRDEFINTGLWSWS
RHPNYAGEMTLHLGVFLLASGSYTRPLEWVCAAMGPTFIVLLLYKVSLPM
LEKRANARWKDNKMYKVYMQRTPAILPGVPEWF*

mRNA from alignment at scaffold_10:455135..456311+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4383 ID=mRNA_4383|Name=jgi.p|Nanoce1779_2|588933|organism=Nannochloropsis oceanica|type=mRNA|length=1177bp|location=Sequence derived from alignment at scaffold_10:455135..456311+ (Nannochloropsis oceanica)
AGACCTACACAGGCATATCTCTCTCTTTTTTGCAGCTATTGAAATTTGCC
GGCATGTTCAAGGTAAGCGCCTATACTCCAAGCTCTTGTCTTCCCCCTCT
CCCCTTACCTTCATCGAGCTTCTGCTTCATCGCCCAGCATGGCCCACCTT
TCCAAGGCACACACGTGAGTTTGCGTCCACAGGAAGCGAAAATCCTGCCT
CGTCCCCCGTTCGCTCTTCTCCACAAGCAGCCAGCACAGTCTCGTCAATT
CCCATACATGCTCGCCTTCCCTTTCTCACTCGGGTCCCAACTGCCTCCCT
CACTCCGCCCCCTCCGTCTCACACTTCTCCAGCTTGTTTCCATCCTCGGC
GTGGCCGGCTTCATGCAAGCCGTCGCCTTGCCGTTCGGTTTGGGAAAACT
CGCTTTCTTTTGCCTGGGCATCCAGTGGCTGGCTTTCATTCCCGCCTTCA
AATGGAAGACGGAGTTTTTCTACGACTTGACCGGTTCCCTGACTTTCCTT
GCCACCATATTTTTGAGTCTGTATGCCGGCGCATGGCCTCCACACCCCCG
CCAACAGATGGCCTCGCTCCTTATTATGGTGTGGGCGTTTCGATTGGGTT
ATTTTTTGTTTACCCGCATCATACAGCATGGCAAGGACTCGCGTTTTGAC
ACTGTGAAGCACGATGCGTTGTTGTTTCTTCAATATTGGAGTGTGCAGGG
ATTGTGGGTATTCTTGACATGCTTGCCTGTTTTAATCTGTGCGACGAAGA
AAGGGGAGGGAGTGCGTAACCCAGCGTGGCCTATTCCAAGCGATTTAGTG
GGGATGCTTGTGTTTTTGGTAGGCATGGGCGTGGAGATGGGGGCGGATTT
TCAGAAGTACCAATGGCAGAACGACTGGCAGCACCGCGACGAATTCATCA
ATACGGGCCTGTGGTCTTGGTCGAGGCATCCGAATTACGCGGGGGAAATG
ACGTTGCACCTTGGAGTGTTCCTGTTGGCTTCTGGATCGTACACCCGACC
GTTGGAATGGGTGTGCGCGGCCATGGGGCCCACGTTCATTGTTTTGTTAT
TGTACAAGGTTAGCCTGCCCATGCTGGAGAAAAGGGCAAATGCCAGGTGG
AAGGATAATAAGATGTATAAGGTGTATATGCAGCGGACACCGGCGATTCT
CCCAGGGGTGCCCGAGTGGTTCTAAGA

Coding sequence (CDS) from alignment at scaffold_10:455135..456311+

>mRNA_4383 ID=mRNA_4383|Name=jgi.p|Nanoce1779_2|588933|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_10:455135..456311+ (Nannochloropsis oceanica)
ATGTTCAAGCTTGTTTCCATCCTCGGCGTGGCCGGCTTCATGCAAGCCGT
CGCCTTGCCGTTCGGTTTGGGAAAACTCGCTTTCTTTTGCCTGGGCATCC
AGTGGCTGGCTTTCATTCCCGCCTTCAAATGGAAGACGGAGTTTTTCTAC
GACTTGACCGGTTCCCTGACTTTCCTTGCCACCATATTTTTGAGTCTGTA
TGCCGGCGCATGGCCTCCACACCCCCGCCAACAGATGGCCTCGCTCCTTA
TTATGGTGTGGGCGTTTCGATTGGGTTATTTTTTGTTTACCCGCATCATA
CAGCATGGCAAGGACTCGCGTTTTGACACTGTGAAGCACGATGCGTTGTT
GTTTCTTCAATATTGGAGTGTGCAGGGATTGTGGGTATTCTTGACATGCT
TGCCTGTTTTAATCTGTGCGACGAAGAAAGGGGAGGGAGTGCGTAACCCA
GCGTGGCCTATTCCAAGCGATTTAGTGGGGATGCTTGTGTTTTTGGTAGG
CATGGGCGTGGAGATGGGGGCGGATTTTCAGAAGTACCAATGGCAGAACG
ACTGGCAGCACCGCGACGAATTCATCAATACGGGCCTGTGGTCTTGGTCG
AGGCATCCGAATTACGCGGGGGAAATGACGTTGCACCTTGGAGTGTTCCT
GTTGGCTTCTGGATCGTACACCCGACCGTTGGAATGGGTGTGCGCGGCCA
TGGGGCCCACGTTCATTGTTTTGTTATTGTACAAGGTTAGCCTGCCCATG
CTGGAGAAAAGGGCAAATGCCAGGTGGAAGGATAATAAGATGTATAAGGT
GTATATGCAGCGGACACCGGCGATTCTCCCAGGGGTGCCCGAGTGGTTCT
AAATGTTCAAGCTTGTTTCCATCCTCGGCGTGGCCGGCTTCATGCAAGCC
GTCGCCTTGCCGTTCGGTTTGGGAAAACTCGCTTTCTTTTGCCTGGGCAT
CCAGTGGCTGGCTTTCATTCCCGCCTTCAAATGGAAGACGGAGTTTTTCT
ACGACTTGACCGGTTCCCTGACTTTCCTTGCCACCATATTTTTGAGTCTG
TATGCCGGCGCATGGCCTCCACACCCCCGCCAACAGATGGCCTCGCTCCT
TATTATGGTGTGGGCGTTTCGATTGGGTTATTTTTTGTTTACCCGCATCA
TACAGCATGGCAAGGACTCGCGTTTTGACACTGTGAAGCACGATGCGTTG
TTGTTTCTTCAATATTGGAGTGTGCAGGGATTGTGGGTATTCTTGACATG
CTTGCCTGTTTTAATCTGTGCGACGAAGAAAGGGGAGGGAGTGCGTAACC
CAGCGTGGCCTATTCCAAGCGATTTAGTGGGGATGCTTGTGTTTTTGGTA
GGCATGGGCGTGGAGATGGGGGCGGATTTTCAGAAGTACCAATGGCAGAA
CGACTGGCAGCACCGCGACGAATTCATCAATACGGGCCTGTGGTCTTGGT
CGAGGCATCCGAATTACGCGGGGGAAATGACGTTGCACCTTGGAGTGTTC
CTGTTGGCTTCTGGATCGTACACCCGACCGTTGGAATGGGTGTGCGCGGC
CATGGGGCCCACGTTCATTGTTTTGTTATTGTACAAGGTTAGCCTGCCCA
TGCTGGAGAAAAGGGCAAATGCCAGGTGGAAGGATAATAAGATGTATAAG
GTGTATATGCAGCGGACACCGGCGATTCTCCCAGGGGTGCCCGAGTGGTT
CTAA

Synonyms

Publications