jgi.p|Nanoce1779_2|555661, mRNA_5785 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555661
Unique NamemRNA_5785
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1760
Alignment locationscaffold_11:570664..572580 -

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Properties
Property NameValue
TranscriptId555747
TrackFilteredModels2
ProteinId555661
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:570664..572580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555661gene_5785Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555661mRNA_5785-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5785CDS_5785Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5785 ID=mRNA_5785|Name=jgi.p|Nanoce1779_2|555661|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp
CAAGTTTTTCCTTTATCACAGTAAACTCCGTCTGCCAACTCCGTCTGCCA
TCTATTTTTTTTAAAAAAAAGTCGTTGATGGGTTGGTCGATTCTTTCACG
AGATCGATATTGACCTTGGTTAAGCCTCTTTCATAATAAATCGAAATAAC
TTTTGGGTCCTCATAATCATTCGACACCTCCCCTAACCTCGAGCACCACT
AGTAGCCTGTACTGGCAATGGTAGACAACCTGAAGCGCTCATTCGCGTGT
GTTGATTTGCCTTCACACCCTTCATCATTATAGAGGCAGTAGCCCCGTCG
ACGTTCTCAAAATGCTGTACCCCGCACAAACCCACACAGCTTAACATCCC
CATCCTTACGCCCTGTGTCGCGTCATGGACGAGGAAGATCCGCGCCCGTC
GCTGCCGCCACCGCTAAGTGTAGAATTAGAATCGTTATCTTCCAGGCCTC
CCGTGGCAGACCTCGAGGACTTGGGTTCCGTGGAGGTTACGAACCGATGC
TGCGGGGCCATGACTTGCCGAGTCTTGGCCCCCGATATTTTCCTGGAGGC
CAAGCAAGGAAGCGGCCCATCAGACGCTCCAACGCCTGACAGCCGCACGC
CTACCGACAACTTTACATACGTTGGGCGTGACATCAAGAATGAGGACGAG
CTGCGCCAAGTGCGACGGGCCGTCAAAGCTTGTCCCTTCCACGCTCTGCG
TTTGCGACGTGGCACAAAAGGCACGGAAGTGATGCGAGAGGATGTAAACG
ACGCATATCCATTGCCTGTAGGTCCGCACGGGGAGGTGTATCTGCTTGGA
CATTACACTCCTAAGAATGCGGGAGCTTCTGGCTACCTAATCGTTCGACC
AAAAGGTGGCAACATCTTGATCGATGCTTCCTCCCCCGACGCAAGCCTCG
TGGAGCGAATCAAGAACTTGGGGGAGGTCAGCTATTTGGTATTTACCCAC
AAGGATCATACGGCGTTTCATCGCGAGTGGTTTCAGGCCTTGCCGGGCAT
GCAGCGGGTCATGCATGTGGATGATGTGGTGGAGGAGAGGGATCATTTCT
TTTTTCCTTACACGGGGGAAGTGGAGATCAAAGTTGCGGGCAAGAAAACC
CAGTCACTCGACAAAGAAGGCGACGTCCTGCTTATCCCCATTCCAGGGCA
CACACCCGGTAGCCTCGCCATCCTTTACCGCAATCACTCTCTCTTTACGG
GGGACTCCCTCCATTTTTCCCGTCCCCGTGGTCACCTCGTCTCCTCACGC
TTGCACTGCTGGTCCGATAGGGAACAACAACAAAAAAGCCTGAAAACCCT
CGAGGGATATGACTGGCTACACATCCTGCCTGGGCACGGGGACCCGAAAG
AGTTTGAAAGTTTAGAAGAGGGGAAAATGTCGTTGCGGCAAGGGTTGGGT
TTGATGGAGGGGCAGCCAAGAGGGTACACAAGCACTGGGCGTTTCGTCCC
GTGGTTGCAACTGAGGACGAATTATTCAGGAGTGCTGAGAAAAGTACCGC
AATGGGCGCGTAAGGGGATGGAGTGGCTGATTGCTCCTGTGGGGGCCCAG
GGGACGAGGGAAAGGGAAAGGGTGGGGGTATGGATACGGAACGCCTTGTT
AGTGTGTTTGGTGTTGAAGGTATTGCCCCGAGTGCTTGCGTGGCGGAGAA
GATTGCGGGATCGCCGGCGGATCCAGGCACGGGTAGCGGCTTTGTGTCGG
CTGCCTTGGGGGCACCCTGGGTTATGGGTTGAATGCTTGGAGGGTGGGGC
GAGGAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|555661

>mRNA_5785-protein ID=mRNA_5785-protein|Name=jgi.p|Nanoce1779_2|555661|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MDEEDPRPSLPPPLSVELESLSSRPPVADLEDLGSVEVTNRCCGAMTCRV
LAPDIFLEAKQGSGPSDAPTPDSRTPTDNFTYVGRDIKNEDELRQVRRAV
KACPFHALRLRRGTKGTEVMREDVNDAYPLPVGPHGEVYLLGHYTPKNAG
ASGYLIVRPKGGNILIDASSPDASLVERIKNLGEVSYLVFTHKDHTAFHR
EWFQALPGMQRVMHVDDVVEERDHFFFPYTGEVEIKVAGKKTQSLDKEGD
VLLIPIPGHTPGSLAILYRNHSLFTGDSLHFSRPRGHLVSSRLHCWSDRE
QQQKSLKTLEGYDWLHILPGHGDPKEFESLEEGKMSLRQGLGLMEGQPRG
YTSTGRFVPWLQLRTNYSGVLRKVPQWARKGMEWLIAPVGAQGTRERERV
GVWIRNALLVCLVLKVLPRVLAWRRRLRDRRRIQARVAALCRLPWGHPGL
WVECLEGGARK*
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mRNA from alignment at scaffold_11:570664..572580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5785 ID=mRNA_5785|Name=jgi.p|Nanoce1779_2|555661|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at scaffold_11:570664..572580- (Nannochloropsis oceanica)
CAAGTTTTTCCTTTATCACAGTAAACTCCGTCTGCCAACTCCGTCTGCCA
TCTATTTTTTTTAAAAAAAAGTCGTTGATGGGTTGGTCGATTCTTTCACG
AGATCGATATTGACCTTGGTTAAGCCTCTTTCATAATAAATCGAAATAAC
TTTTGGGTCCTCATAATCATTCGACACCTCCCCTAACCTCGAGCACCACT
AGTAGCCTGTACTGGCAATGGTAGACAACCTGAAGCGCTCATTCGCGTGT
GTTGATTTGCCTTCACACCCTTCATCATTATAGAGGCAGTAGCCCCGTCG
ACGTTCTCAAAATGCTGTACCCCGCACAAACCCACACAGCTTAACATCCC
CATCCTTACGCCCTGTGTCGCGTCATGGACGAGGAAGATCCGCGCCCGTC
GCTGCCGCCACCGCTAAGTGTAGAATTAGAATCGTTATCTTCCAGGCCTC
CCGTGGCAGACCTCGAGGACTTGGGTTCCGTGGAGGTTACGAACCGATGC
TGCGGGGCCATGACTTGCCGAGTCTTGGCCCCCGATATTTTCCTGGAGGC
CAAGCAAGGAAGCGGCCCATCAGACGCTCCAACGCCTGACAGCCGCACGC
CTACCGACAACTTTACATACGTTGGGCGTGACATCAAGAATGAGGACGAG
CTGCGCCAAGTGCGACGGGCCGTCAAAGCTTGTCCCTTCCACGCTCTGCG
TTTGCGACGTGGCACAAAAGGCACGGAAGTGATGCGAGAGGATGTAAACG
ACGCATATCCATTGCCTGTAGGTCCGCACGGGGAGGTGTATCTGCTTGGA
CATTACACTCCTAAGAATGCGGGAGCTTCTGGCTACCTAATCGTTCGACC
AAAAGGTGGCAACATCTTGATCGATGCTTCCTCCCCCGACGCAAGCCTCG
TGGAGCGAATCAAGAACTTGGGGGAGGTCAGCTATTTGGTATTTACCCAC
AAGGATCATACGGCGTTTCATCGCGAGTGGTTTCAGGCCTTGCCGGGCAT
GCAGCGGGTCATGCATGTGGATGATGTGGTGGAGGAGAGGGATCATTTCT
TTTTTCCTTACACGGGGGAAGTGGAGATCAAAGTTGGTGCGTTTTAATGA
AATGAATTCGGAGAGAAATGAAGGGAGATACTGGAAACAAGATGCTCACA
AAGCAGCGCCAGAAAAAAGTCTTTTGACCAAAACACACACTCAGATTCCA
CCCATCACCACAACCACCACACATGCAAACACGTACCGAACAGCGGGCAA
GAAAACCCAGTCACTCGACAAAGAAGGCGACGTCCTGCTTATCCCCATTC
CAGGGCACACACCCGGTAGCCTCGCCATCCTTTACCGCAATCACTCTCTC
TTTACGGGGGACTCCCTCCATTTTTCCCGTCCCCGTGGTCACCTCGTCTC
CTCACGCTTGCACTGCTGGTCCGATAGGGAACAACAACAAAAAAGCCTGA
AAACCCTCGAGGGATATGACTGGCTACACATCCTGCCTGGGCACGGGGAC
CCGAAAGAGTTTGAAAGTTTAGAAGAGGGGAAAATGTCGTTGCGGCAAGG
GTTGGGTTTGATGGAGGGGCAGCCAAGAGGGTACACAAGCACTGGGCGTT
TCGTCCCGTGGTTGCAACTGAGGACGAATTATTCAGGAGTGCTGAGAAAA
GTACCGCAATGGGCGCGTAAGGGGATGGAGTGGCTGATTGCTCCTGTGGG
GGCCCAGGGGACGAGGGAAAGGGAAAGGGTGGGGGTATGGATACGGAACG
CCTTGTTAGTGTGTTTGGTGTTGAAGGTATTGCCCCGAGTGCTTGCGTGG
CGGAGAAGATTGCGGGATCGCCGGCGGATCCAGGCACGGGTAGCGGCTTT
GTGTCGGCTGCCTTGGGGGCACCCTGGGTTATGGGTTGAATGCTTGGAGG
GTGGGGCGAGGAAGTAG
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Coding sequence (CDS) from alignment at scaffold_11:570664..572580-

>mRNA_5785 ID=mRNA_5785|Name=jgi.p|Nanoce1779_2|555661|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_11:570664..572580- (Nannochloropsis oceanica)
CGGGCAAGAAAACCCAGTCACTCGACAAAGAAGGCGACGTCCTGCTTATC
CCCATTCCAGGGCACACACCCGGTAGCCTCGCCATCCTTTACCGCAATCA
CTCTCTCTTTACGGGGGACTCCCTCCATTTTTCCCGTCCCCGTGGTCACC
TCGTCTCCTCACGCTTGCACTGCTGGTCCGATAGGGAACAACAACAAAAA
AGCCTGAAAACCCTCGAGGGATATGACTGGCTACACATCCTGCCTGGGCA
CGGGGACCCGAAAGAGTTTGAAAGTTTAGAAGAGGGGAAAATGTCGTTGC
GGCAAGGGTTGGGTTTGATGGAGGGGCAGCCAAGAGGGTACACAAGCACT
GGGCGTTTCGTCCCGTGGTTGCAACTGAGGACGAATTATTCAGGAGTGCT
GAGAAAAGTACCGCAATGGGCGCGTAAGGGGATGGAGTGGCTGATTGCTC
CTGTGGGGGCCCAGGGGACGAGGGAAAGGGAAAGGGTGGGGGTATGGATA
CGGAACGCCTTGTTAGTGTGTTTGGTGTTGAAGGTATTGCCCCGAGTGCT
TGCGTGGCGGAGAAGATTGCGGGATCGCCGGCGGATCCAGGCACGGGTAG
CGGCTTTGTGTCGGCTGCCTTGGGGGCACCCTGGGTTATGGGTTGAATGC
TTGGAGGGTGGGGCGAGGAAGTAGATGGACGAGGAAGATCCGCGCCCGTC
GCTGCCGCCACCGCTAAGTGTAGAATTAGAATCGTTATCTTCCAGGCCTC
CCGTGGCAGACCTCGAGGACTTGGGTTCCGTGGAGGTTACGAACCGATGC
TGCGGGGCCATGACTTGCCGAGTCTTGGCCCCCGATATTTTCCTGGAGGC
CAAGCAAGGAAGCGGCCCATCAGACGCTCCAACGCCTGACAGCCGCACGC
CTACCGACAACTTTACATACGTTGGGCGTGACATCAAGAATGAGGACGAG
CTGCGCCAAGTGCGACGGGCCGTCAAAGCTTGTCCCTTCCACGCTCTGCG
TTTGCGACGTGGCACAAAAGGCACGGAAGTGATGCGAGAGGATGTAAACG
ACGCATATCCATTGCCTGTAGGTCCGCACGGGGAGGTGTATCTGCTTGGA
CATTACACTCCTAAGAATGCGGGAGCTTCTGGCTACCTAATCGTTCGACC
AAAAGGTGGCAACATCTTGATCGATGCTTCCTCCCCCGACGCAAGCCTCG
TGGAGCGAATCAAGAACTTGGGGGAGGTCAGCTATTTGGTATTTACCCAC
AAGGATCATACGGCGTTTCATCGCGAGTGGTTTCAGGCCTTGCCGGGCAT
GCAGCGGGTCATGCATGTGGATGATGTGGTGGAGGAGAGGGATCATTTCT
TTTTTCCTTACACGGGGGAAGTGGAGATCAAAGTTGCGGGCAAGAAAACC
CAGTCACTCGACAAAGAAGGCGACGTCCTGCTTATCCCCATTCCAGGGCA
CACACCCGGTAGCCTCGCCATCCTTTACCGCAATCACTCTCTCTTTACGG
GGGACTCCCTCCATTTTTCCCGTCCCCGTGGTCACCTCGTCTCCTCACGC
TTGCACTGCTGGTCCGATAGGGAACAACAACAAAAAAGCCTGAAAACCCT
CGAGGGATATGACTGGCTACACATCCTGCCTGGGCACGGGGACCCGAAAG
AGTTTGAAAGTTTAGAAGAGGGGAAAATGTCGTTGCGGCAAGGGTTGGGT
TTGATGGAGGGGCAGCCAAGAGGGTACACAAGCACTGGGCGTTTCGTCCC
GTGGTTGCAACTGAGGACGAATTATTCAGGAGTGCTGAGAAAAGTACCGC
AATGGGCGCGTAAGGGGATGGAGTGGCTGATTGCTCCTGTGGGGGCCCAG
GGGACGAGGGAAAGGGAAAGGGTGGGGGTATGGATACGGAACGCCTTGTT
AGTGTGTTTGGTGTTGAAGGTATTGCCCCGAGTGCTTGCGTGGCGGAGAA
GATTGCGGGATCGCCGGCGGATCCAGGCACGGGTAGCGGCTTTGTGTCGG
CTGCCTTGGGGGCACCCTGGGTTATGGGTTGAATGCTTGGAGGGTGGGGC
GAGGAAGTAGATGGACGAGGAAGATCCGCGCCCGTCGCTGCCGCCACCGC
TAAGTGTAGAATTAGAATCGTTATCTTCCAGGCCTCCCGTGGCAGACCTC
GAGGACTTGGGTTCCGTGGAGGTTACGAACCGATGCTGCGGGGCCATGAC
TTGCCGAGTCTTGGCCCCCGATATTTTCCTGGAGGCCAAGCAAGGAAGCG
GCCCATCAGACGCTCCAACGCCTGACAGCCGCACGCCTACCGACAACTTT
ACATACGTTGGGCGTGACATCAAGAATGAGGACGAGCTGCGCCAAGTGCG
ACGGGCCGTCAAAGCTTGTCCCTTCCACGCTCTGCGTTTGCGACGTGGCA
CAAAAGGCACGGAAGTGATGCGAGAGGATGTAAACGACGCATATCCATTG
CCTGTAGGTCCGCACGGGGAGGTGTATCTGCTTGGACATTACACTCCTAA
GAATGCGGGAGCTTCTGGCTACCTAATCGTTCGACCAAAAGGTGGCAACA
TCTTGATCGATGCTTCCTCCCCCGACGCAAGCCTCGTGGAGCGAATCAAG
AACTTGGGGGAGGTCAGCTATTTGGTATTTACCCACAAGGATCATACGGC
GTTTCATCGCGAGTGGTTTCAGGCCTTGCCGGGCATGCAGCGGGTCATGC
ATGTGGATGATGTGGTGGAGGAGAGGGATCATTTCTTTTTTCCTTACACG
GGGGAAGTGGAGATCAAAGTTG
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Synonyms
Publications