jgi.p|Nanoce1779_2|590104, mRNA_5721 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590104
Unique Name	mRNA_5721
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2663
Alignment location	scaffold_11:410021..412683 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590190
Track	FilteredModels2
ProteinId	590104

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:410021..412683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590104	gene_5721	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590104	mRNA_5721-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5721	CDS_5721	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:410021..412683+
coding sequence from alignment at scaffold_11:410021..412683+

mRNA sequence

>mRNA_5721 ID=mRNA_5721|Name=jgi.p|Nanoce1779_2|590104|organism=Nannochloropsis oceanica|type=mRNA|length=2663bp
ACAGGAGAGGTGACGTTGGCCAGGCCATGGACGGCGATGGAACGCCCACA
ATCCGGACATGGGAGGCGTTTGTCGATTCTCCTGCCACCCTCTTTCAGCC
GCACCATCACCCCGCCCATCTCCTCCGGCAGCGCGAGGAACATGGCCGGC
TGCGAACCCGCACCACGGTCCCCGCTCCCGCATCCTACTACACTCCGGGC
TTTACGCCTTTTGAAATGCGCCATCAGTTGGCCTTCGTGACGAAAAGCTT
CGACTGTGTTGGTCGTGCCTCTCCACTGCGGCACGAGGGCTGCGTCAATG
CTGCTTGTTGGAGCGAGAATGGCCAATTTCTCTACACAGCGGGCGACGAC
AGGCTAGTCCAATCATGGGACGTCACTCGGGGATTCAAGCATCTACGAGA
AATTAATACACTCCACGAAGGAAATATATTTGGCGTTCAAGTCGTCCCTG
GCCATCCTGAGCTCCTGCTGACAAATTCAGCGGACGGAACGCTACGGATT
CACGATATTTCTTCTCGCGGGTCCGAGCGCTTAGTGGGGACCTGTGATCC
TCACGCAGTGATGCACGGATTTTGTTTCTGGGACGGAGGCTGCAGCGGAG
GAGTGGGTCAAGTTGTCTTAACGGCACAGGGCAATGGTATTGTGGTGAAA
TACGACTTGCGGGAGGCAAGTAGCGCTGGCCAAGCTATGTATCGTCGTGG
ATCGCCAAGCGGCCAGCAGCTGTCCGTGAAGGCCGTCGTCACGCCCGACA
TTTACAACACCGCCAAGGGTATCTCGCCTTTCATGATGTGCTTGGGTGGT
CACGGTCCTACTCTAGAAGTCTACGACCTACGTCGTCTGCCCTGCATGGC
AGCCAAGCCACTCCAGATGTACCGCCCGCAGGGCCTACCAGAATTCCTGA
GTCAGACACACCTCGGGATGGAGGAAGAGGTGAGCGTAAGTGGCCTGGCT
TATTCCAAGGACCGCGGAGAAATTCTGGTATCTTTTCAAGGTGACCAGAT
ATATGGCTTCAACACTGCTGACGCTGCCTGTGGCGAGGGAGGGGAGACAC
ACGAAGCCTGGTCTGTAGGTGGCCACATCAATTCGCAAACGTTCCTCAAG
TCTGTCACCTATTTCGGACCGCGTGAAGAGTACATTGTGTGTGGCGATGA
TTTGGCGCACACGTGGATTTGGGACCGGAGAAGCGGGATGCTCGTGAATT
TGGTCTGCACTGACATGTCGGTCGCGAATGGGTGTGTGTCTCATCCCTTT
TTGCCCATGCTAGCTTGCTGGGGGATAGATGACACGGTCAAAGTTTTGGC
TGTGGGGGGTCGTTATTCTTCTTTCAAAAAGGATGAGAGTGTGGACAAAG
CGCTGGAAGAAGATGATAGCGCAGCGGATACATGTACAACACGACAGGGA
ATGGTGCGGCGGAGGCTGCGGAGGGGAAGAGGAGGAAATGAAGAACGAGG
GGGAGGAGAACGACAAGCACATCCATGGGATATGGAATGGTTGCAGTCGC
TTCCGAGTATATATTTTGGGACCGTTCTGGAGACTGGGATGGCAATGGGG
GTGTTCAGCAATCCTGGAAAGCCCAGGATGGTCTATGATCACGAGCGCTA
TCGCCAGCACGTCAAGCGCATCCGTCAATTTATGTCCGAGCCCTGCGACC
ATCTGCCTGATTACCCGACTGACTGTAGCAATTCTTTTACTTTAGATGAG
CTAGAGGGCTTGCTCCTGCAGGTAAAGGAAATGGGGAATTTCTTCTTCAA
AGCCAAACAATACGGACGTGCTTCGCGCTGTTACAAGAAGATTCAAATGT
GGCTCTATTCTTTGGCTGGGATGAGAGTGAAGATTTATAAGATGCAGGTG
GAAGCGTCTGCTTTGGGAGAAAGGGACCAGTTTGATCGGCTTGAATTTCC
GGTGGAGTCGACGTTGTCGCCGTCGGTGCAGCAGCACACACGGTGTCAGG
CTGTGGTAGCCAAGCACCTGAAGGGGACATCTGGACCTGTGGGCGGGGAA
GCATTAGCGGAGGATAGAACAGGCGAGGAAGTGAAAGACGTTATGTTCGC
ACGTCTGCTTAATCTGCTTGTGACAGTTCACTTGAATATGGCCATGACGG
CCCGGGCACTTGGACACCACCTGGCTGCTATTTCTTTGTGCACCTCTGTC
ATCCGAATCAAACCACGGGAAGCCAAGGCGTTCTATCTCAGGGGTGTCGC
GGCATTGGAGCTGGGGGAGAATTTCGAAACTACTGTCCAGGACCTCGTGA
AGGCTCGTGATCTAGCGCCTGGGGACGCACTCATCGCTCGCAAGCTGGCT
GAGGCGAGGCGGCTGCTCAAGGCGCAGCAAGCCCGCGAGTTCCGAGCTTA
TGCCACCTTCTTTTCGTTGGCACCAGATGAAGAGGAAGAGGATATGAGCG
GAGCAAGACAGGGAGAATGTTGAGGAAGGCTAAGGGAACCATTTCCAATA
CAAGAAAGCTTATGGATGGGGGAAGATGTGCGTTGTTTTTGTTATTAATA
GCATGAGTTATACAAAGTGGGAGGGAATAGGCAAGAGTTGGACAAGGCTG
GAATCGAGGACAGGGCACGGGTTTGACACACCCGGGGCATACGAGACTGT
AAATAAGATGTACCGACCCCAGGCACAAAGCTAGATAAAGTGAATATGAG
CCTTATGACCCCT

protein sequence of jgi.p|Nanoce1779_2|590104

>mRNA_5721-protein ID=mRNA_5721-protein|Name=jgi.p|Nanoce1779_2|590104|organism=Nannochloropsis oceanica|type=polypeptide|length=799bp
MDGDGTPTIRTWEAFVDSPATLFQPHHHPAHLLRQREEHGRLRTRTTVPA
PASYYTPGFTPFEMRHQLAFVTKSFDCVGRASPLRHEGCVNAACWSENGQ
FLYTAGDDRLVQSWDVTRGFKHLREINTLHEGNIFGVQVVPGHPELLLTN
SADGTLRIHDISSRGSERLVGTCDPHAVMHGFCFWDGGCSGGVGQVVLTA
QGNGIVVKYDLREASSAGQAMYRRGSPSGQQLSVKAVVTPDIYNTAKGIS
PFMMCLGGHGPTLEVYDLRRLPCMAAKPLQMYRPQGLPEFLSQTHLGMEE
EVSVSGLAYSKDRGEILVSFQGDQIYGFNTADAACGEGGETHEAWSVGGH
INSQTFLKSVTYFGPREEYIVCGDDLAHTWIWDRRSGMLVNLVCTDMSVA
NGCVSHPFLPMLACWGIDDTVKVLAVGGRYSSFKKDESVDKALEEDDSAA
DTCTTRQGMVRRRLRRGRGGNEERGGGERQAHPWDMEWLQSLPSIYFGTV
LETGMAMGVFSNPGKPRMVYDHERYRQHVKRIRQFMSEPCDHLPDYPTDC
SNSFTLDELEGLLLQVKEMGNFFFKAKQYGRASRCYKKIQMWLYSLAGMR
VKIYKMQVEASALGERDQFDRLEFPVESTLSPSVQQHTRCQAVVAKHLKG
TSGPVGGEALAEDRTGEEVKDVMFARLLNLLVTVHLNMAMTARALGHHLA
AISLCTSVIRIKPREAKAFYLRGVAALELGENFETTVQDLVKARDLAPGD
ALIARKLAEARRLLKAQQAREFRAYATFFSLAPDEEEEDMSGARQGEC*

mRNA from alignment at scaffold_11:410021..412683+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5721 ID=mRNA_5721|Name=jgi.p|Nanoce1779_2|590104|organism=Nannochloropsis oceanica|type=mRNA|length=2663bp|location=Sequence derived from alignment at scaffold_11:410021..412683+ (Nannochloropsis oceanica)
ACAGGAGAGGTGACGTTGGCCAGGCCATGGACGGCGATGGAACGCCCACA
ATCCGGACATGGGAGGCGTTTGTCGATTCTCCTGCCACCCTCTTTCAGCC
GCACCATCACCCCGCCCATCTCCTCCGGCAGCGCGAGGAACATGGCCGGC
TGCGAACCCGCACCACGGTCCCCGCTCCCGCATCCTACTACACTCCGGGC
TTTACGCCTTTTGAAATGCGCCATCAGTTGGCCTTCGTGACGAAAAGCTT
CGACTGTGTTGGTCGTGCCTCTCCACTGCGGCACGAGGGCTGCGTCAATG
CTGCTTGTTGGAGCGAGAATGGCCAATTTCTCTACACAGCGGGCGACGAC
AGGCTAGTCCAATCATGGGACGTCACTCGGGGATTCAAGCATCTACGAGA
AATTAATACACTCCACGAAGGAAATATATTTGGCGTTCAAGTCGTCCCTG
GCCATCCTGAGCTCCTGCTGACAAATTCAGCGGACGGAACGCTACGGATT
CACGATATTTCTTCTCGCGGGTCCGAGCGCTTAGTGGGGACCTGTGATCC
TCACGCAGTGATGCACGGATTTTGTTTCTGGGACGGAGGCTGCAGCGGAG
GAGTGGGTCAAGTTGTCTTAACGGCACAGGGCAATGGTATTGTGGTGAAA
TACGACTTGCGGGAGGCAAGTAGCGCTGGCCAAGCTATGTATCGTCGTGG
ATCGCCAAGCGGCCAGCAGCTGTCCGTGAAGGCCGTCGTCACGCCCGACA
TTTACAACACCGCCAAGGGTATCTCGCCTTTCATGATGTGCTTGGGTGGT
CACGGTCCTACTCTAGAAGTCTACGACCTACGTCGTCTGCCCTGCATGGC
AGCCAAGCCACTCCAGATGTACCGCCCGCAGGGCCTACCAGAATTCCTGA
GTCAGACACACCTCGGGATGGAGGAAGAGGTGAGCGTAAGTGGCCTGGCT
TATTCCAAGGACCGCGGAGAAATTCTGGTATCTTTTCAAGGTGACCAGAT
ATATGGCTTCAACACTGCTGACGCTGCCTGTGGCGAGGGAGGGGAGACAC
ACGAAGCCTGGTCTGTAGGTGGCCACATCAATTCGCAAACGTTCCTCAAG
TCTGTCACCTATTTCGGACCGCGTGAAGAGTACATTGTGTGTGGCGATGA
TTTGGCGCACACGTGGATTTGGGACCGGAGAAGCGGGATGCTCGTGAATT
TGGTCTGCACTGACATGTCGGTCGCGAATGGGTGTGTGTCTCATCCCTTT
TTGCCCATGCTAGCTTGCTGGGGGATAGATGACACGGTCAAAGTTTTGGC
TGTGGGGGGTCGTTATTCTTCTTTCAAAAAGGATGAGAGTGTGGACAAAG
CGCTGGAAGAAGATGATAGCGCAGCGGATACATGTACAACACGACAGGGA
ATGGTGCGGCGGAGGCTGCGGAGGGGAAGAGGAGGAAATGAAGAACGAGG
GGGAGGAGAACGACAAGCACATCCATGGGATATGGAATGGTTGCAGTCGC
TTCCGAGTATATATTTTGGGACCGTTCTGGAGACTGGGATGGCAATGGGG
GTGTTCAGCAATCCTGGAAAGCCCAGGATGGTCTATGATCACGAGCGCTA
TCGCCAGCACGTCAAGCGCATCCGTCAATTTATGTCCGAGCCCTGCGACC
ATCTGCCTGATTACCCGACTGACTGTAGCAATTCTTTTACTTTAGATGAG
CTAGAGGGCTTGCTCCTGCAGGTAAAGGAAATGGGGAATTTCTTCTTCAA
AGCCAAACAATACGGACGTGCTTCGCGCTGTTACAAGAAGATTCAAATGT
GGCTCTATTCTTTGGCTGGGATGAGAGTGAAGATTTATAAGATGCAGGTG
GAAGCGTCTGCTTTGGGAGAAAGGGACCAGTTTGATCGGCTTGAATTTCC
GGTGGAGTCGACGTTGTCGCCGTCGGTGCAGCAGCACACACGGTGTCAGG
CTGTGGTAGCCAAGCACCTGAAGGGGACATCTGGACCTGTGGGCGGGGAA
GCATTAGCGGAGGATAGAACAGGCGAGGAAGTGAAAGACGTTATGTTCGC
ACGTCTGCTTAATCTGCTTGTGACAGTTCACTTGAATATGGCCATGACGG
CCCGGGCACTTGGACACCACCTGGCTGCTATTTCTTTGTGCACCTCTGTC
ATCCGAATCAAACCACGGGAAGCCAAGGCGTTCTATCTCAGGGGTGTCGC
GGCATTGGAGCTGGGGGAGAATTTCGAAACTACTGTCCAGGACCTCGTGA
AGGCTCGTGATCTAGCGCCTGGGGACGCACTCATCGCTCGCAAGCTGGCT
GAGGCGAGGCGGCTGCTCAAGGCGCAGCAAGCCCGCGAGTTCCGAGCTTA
TGCCACCTTCTTTTCGTTGGCACCAGATGAAGAGGAAGAGGATATGAGCG
GAGCAAGACAGGGAGAATGTTGAGGAAGGCTAAGGGAACCATTTCCAATA
CAAGAAAGCTTATGGATGGGGGAAGATGTGCGTTGTTTTTGTTATTAATA
GCATGAGTTATACAAAGTGGGAGGGAATAGGCAAGAGTTGGACAAGGCTG
GAATCGAGGACAGGGCACGGGTTTGACACACCCGGGGCATACGAGACTGT
AAATAAGATGTACCGACCCCAGGCACAAAGCTAGATAAAGTGAATATGAG
CCTTATGACCCCT

Coding sequence (CDS) from alignment at scaffold_11:410021..412683+

>mRNA_5721 ID=mRNA_5721|Name=jgi.p|Nanoce1779_2|590104|organism=Nannochloropsis oceanica|type=CDS|length=2397bp|location=Sequence derived from alignment at scaffold_11:410021..412683+ (Nannochloropsis oceanica)
ATGGACGGCGATGGAACGCCCACAATCCGGACATGGGAGGCGTTTGTCGA
TTCTCCTGCCACCCTCTTTCAGCCGCACCATCACCCCGCCCATCTCCTCC
GGCAGCGCGAGGAACATGGCCGGCTGCGAACCCGCACCACGGTCCCCGCT
CCCGCATCCTACTACACTCCGGGCTTTACGCCTTTTGAAATGCGCCATCA
GTTGGCCTTCGTGACGAAAAGCTTCGACTGTGTTGGTCGTGCCTCTCCAC
TGCGGCACGAGGGCTGCGTCAATGCTGCTTGTTGGAGCGAGAATGGCCAA
TTTCTCTACACAGCGGGCGACGACAGGCTAGTCCAATCATGGGACGTCAC
TCGGGGATTCAAGCATCTACGAGAAATTAATACACTCCACGAAGGAAATA
TATTTGGCGTTCAAGTCGTCCCTGGCCATCCTGAGCTCCTGCTGACAAAT
TCAGCGGACGGAACGCTACGGATTCACGATATTTCTTCTCGCGGGTCCGA
GCGCTTAGTGGGGACCTGTGATCCTCACGCAGTGATGCACGGATTTTGTT
TCTGGGACGGAGGCTGCAGCGGAGGAGTGGGTCAAGTTGTCTTAACGGCA
CAGGGCAATGGTATTGTGGTGAAATACGACTTGCGGGAGGCAAGTAGCGC
TGGCCAAGCTATGTATCGTCGTGGATCGCCAAGCGGCCAGCAGCTGTCCG
TGAAGGCCGTCGTCACGCCCGACATTTACAACACCGCCAAGGGTATCTCG
CCTTTCATGATGTGCTTGGGTGGTCACGGTCCTACTCTAGAAGTCTACGA
CCTACGTCGTCTGCCCTGCATGGCAGCCAAGCCACTCCAGATGTACCGCC
CGCAGGGCCTACCAGAATTCCTGAGTCAGACACACCTCGGGATGGAGGAA
GAGGTGAGCGTAAGTGGCCTGGCTTATTCCAAGGACCGCGGAGAAATTCT
GGTATCTTTTCAAGGTGACCAGATATATGGCTTCAACACTGCTGACGCTG
CCTGTGGCGAGGGAGGGGAGACACACGAAGCCTGGTCTGTAGGTGGCCAC
ATCAATTCGCAAACGTTCCTCAAGTCTGTCACCTATTTCGGACCGCGTGA
AGAGTACATTGTGTGTGGCGATGATTTGGCGCACACGTGGATTTGGGACC
GGAGAAGCGGGATGCTCGTGAATTTGGTCTGCACTGACATGTCGGTCGCG
AATGGGTGTGTGTCTCATCCCTTTTTGCCCATGCTAGCTTGCTGGGGGAT
AGATGACACGGTCAAAGTTTTGGCTGTGGGGGGTCGTTATTCTTCTTTCA
AAAAGGATGAGAGTGTGGACAAAGCGCTGGAAGAAGATGATAGCGCAGCG
GATACATGTACAACACGACAGGGAATGGTGCGGCGGAGGCTGCGGAGGGG
AAGAGGAGGAAATGAAGAACGAGGGGGAGGAGAACGACAAGCACATCCAT
GGGATATGGAATGGTTGCAGTCGCTTCCGAGTATATATTTTGGGACCGTT
CTGGAGACTGGGATGGCAATGGGGGTGTTCAGCAATCCTGGAAAGCCCAG
GATGGTCTATGATCACGAGCGCTATCGCCAGCACGTCAAGCGCATCCGTC
AATTTATGTCCGAGCCCTGCGACCATCTGCCTGATTACCCGACTGACTGT
AGCAATTCTTTTACTTTAGATGAGCTAGAGGGCTTGCTCCTGCAGGTAAA
GGAAATGGGGAATTTCTTCTTCAAAGCCAAACAATACGGACGTGCTTCGC
GCTGTTACAAGAAGATTCAAATGTGGCTCTATTCTTTGGCTGGGATGAGA
GTGAAGATTTATAAGATGCAGGTGGAAGCGTCTGCTTTGGGAGAAAGGGA
CCAGTTTGATCGGCTTGAATTTCCGGTGGAGTCGACGTTGTCGCCGTCGG
TGCAGCAGCACACACGGTGTCAGGCTGTGGTAGCCAAGCACCTGAAGGGG
ACATCTGGACCTGTGGGCGGGGAAGCATTAGCGGAGGATAGAACAGGCGA
GGAAGTGAAAGACGTTATGTTCGCACGTCTGCTTAATCTGCTTGTGACAG
TTCACTTGAATATGGCCATGACGGCCCGGGCACTTGGACACCACCTGGCT
GCTATTTCTTTGTGCACCTCTGTCATCCGAATCAAACCACGGGAAGCCAA
GGCGTTCTATCTCAGGGGTGTCGCGGCATTGGAGCTGGGGGAGAATTTCG
AAACTACTGTCCAGGACCTCGTGAAGGCTCGTGATCTAGCGCCTGGGGAC
GCACTCATCGCTCGCAAGCTGGCTGAGGCGAGGCGGCTGCTCAAGGCGCA
GCAAGCCCGCGAGTTCCGAGCTTATGCCACCTTCTTTTCGTTGGCACCAG
ATGAAGAGGAAGAGGATATGAGCGGAGCAAGACAGGGAGAATGTTGA

Synonyms

Publications