jgi.p|Nanoce1779_2|590753, mRNA_5897 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590753
Unique NamemRNA_5897
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1048
Alignment locationscaffold_11:889219..890406 -

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Properties
Property NameValue
TranscriptId590839
TrackFilteredModels2
ProteinId590753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:889219..890406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590753gene_5897Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590753mRNA_5897-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5897CDS_5897Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5897 ID=mRNA_5897|Name=jgi.p|Nanoce1779_2|590753|organism=Nannochloropsis oceanica|type=mRNA|length=1048bp
AGCACCTATCAATACAGGCAGTGACAGCGGCAGCTGACCAGCATGATGGA
TCGCAGGACAGCCGAGCACCTGATTAGCCAAGGCTGCGTGATGGGCATCG
TCCATGTATTGTCTGGCCCCGACCACCTTTCTGCCTTGGCAGCACTCACG
GCTACAGTCCCTCCTTACAAAGCTTTCTTTGCCGGCGTCCAGTGGGGCAT
GGGACATAGCACGGGCCTGATCCTCATGACAGCCGTTTTTGTGAGTGTCG
AGCACGAGATTATGGACCGGGTGGCGAGTTATTGTGAGTGGCTTGTGGGC
TTTTTGATGATTGGCTTGGGGGCATGGACGATGTGGCGGGCCTTCAAGCG
ACCATCTTCCCAGCACTCGTCATTGACACCAAGAGAGAAAAGGAGTTTTT
CCAATGCACCAGCGGTGGCACCGGGGTTGTTGGTGGGAGAGGACGAGAAG
GGGAACAAAAATGCTCCGACGGTGTACGTTAGGGGGGGGGATGAAGTGGT
GACTGTGGAAGCAGACGGCAACAGCGCGGTCGTCGTGAAGATGGATGAGA
ACTCTACCGTCATTCCCACCTCCGCCTCCCGTGACGATGTGTCCCTCCCA
CTCAGCCACAAGGAGAGGACGGAGGAAGCGAAGGAGGGCGCGCCGTCAAG
GAGTGGCTGGTGCCGTCGCCCAAAGCAGTTGAAGGAGAAATTGTTGTCGT
TTGTGGTGGGGGTAGTACACGGCGTGGCGGGACCCGGAGGGATTTTGGGC
GTGCTGCCGGCGGTGCAGCTGCGTGATTGGGGCAAGTCCTCGCTGTATTT
GGGGACGTTTTGTGTGATGTCTTCGTTGACGATGGGTGCCTTTGCCGCTG
TGTACGGAGGCGTGACGTATGGATTGGGGAAGAAGGTGAGCGAGAGGGAT
GGAGGAGAGAAGGGTAAGAAGAGGGCCGAGAGGCTTGATTTCAGCTTGAA
GATTTTCAGCGCCATGTTGTCGGTGGTGGTGGGGGTGCTGTGGCTAGCGT
TGACGGCGACGGGGAAGATGGCGGAGGTGTTTGGGGAGTAGAGCGAGG
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protein sequence of jgi.p|Nanoce1779_2|590753

>mRNA_5897-protein ID=mRNA_5897-protein|Name=jgi.p|Nanoce1779_2|590753|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MMDRRTAEHLISQGCVMGIVHVLSGPDHLSALAALTATVPPYKAFFAGVQ
WGMGHSTGLILMTAVFVSVEHEIMDRVASYCEWLVGFLMIGLGAWTMWRA
FKRPSSQHSSLTPREKRSFSNAPAVAPGLLVGEDEKGNKNAPTVYVRGGD
EVVTVEADGNSAVVVKMDENSTVIPTSASRDDVSLPLSHKERTEEAKEGA
PSRSGWCRRPKQLKEKLLSFVVGVVHGVAGPGGILGVLPAVQLRDWGKSS
LYLGTFCVMSSLTMGAFAAVYGGVTYGLGKKVSERDGGEKGKKRAERLDF
SLKIFSAMLSVVVGVLWLALTATGKMAEVFGE*
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mRNA from alignment at scaffold_11:889219..890406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5897 ID=mRNA_5897|Name=jgi.p|Nanoce1779_2|590753|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at scaffold_11:889219..890406- (Nannochloropsis oceanica)
AGCACCTATCAATACAGGCAGTGACAGCGGCAGCTGACCAGCATGATGGA
TCGCAGGACAGCCGAGCACCTGATTAGCCAAGGCTGCGTGATGGGCATCG
TCCATGTATTGTCTGGTAAGTCGTAGCCTGATAACGCAGGGTAGATAGAT
GACCAGACATGGTCATCCCTTCGCTCCTGCTGTCTCACTTGTCAATTCTG
TCATCCTACACTCTCCCCATGTACTCTCTTTTATTTACTCTGGTCCACTC
CGCAGGCCCCGACCACCTTTCTGCCTTGGCAGCACTCACGGCTACAGTCC
CTCCTTACAAAGCTTTCTTTGCCGGCGTCCAGTGGGGCATGGGACATAGC
ACGGGCCTGATCCTCATGACAGCCGTTTTTGTGAGTGTCGAGCACGAGAT
TATGGACCGGGTGGCGAGTTATTGTGAGTGGCTTGTGGGCTTTTTGATGA
TTGGCTTGGGGGCATGGACGATGTGGCGGGCCTTCAAGCGACCATCTTCC
CAGCACTCGTCATTGACACCAAGAGAGAAAAGGAGTTTTTCCAATGCACC
AGCGGTGGCACCGGGGTTGTTGGTGGGAGAGGACGAGAAGGGGAACAAAA
ATGCTCCGACGGTGTACGTTAGGGGGGGGGATGAAGTGGTGACTGTGGAA
GCAGACGGCAACAGCGCGGTCGTCGTGAAGATGGATGAGAACTCTACCGT
CATTCCCACCTCCGCCTCCCGTGACGATGTGTCCCTCCCACTCAGCCACA
AGGAGAGGACGGAGGAAGCGAAGGAGGGCGCGCCGTCAAGGAGTGGCTGG
TGCCGTCGCCCAAAGCAGTTGAAGGAGAAATTGTTGTCGTTTGTGGTGGG
GGTAGTACACGGCGTGGCGGGACCCGGAGGGATTTTGGGCGTGCTGCCGG
CGGTGCAGCTGCGTGATTGGGGCAAGTCCTCGCTGTATTTGGGGACGTTT
TGTGTGATGTCTTCGTTGACGATGGGTGCCTTTGCCGCTGTGTACGGAGG
CGTGACGTATGGATTGGGGAAGAAGGTGAGCGAGAGGGATGGAGGAGAGA
AGGGTAAGAAGAGGGCCGAGAGGCTTGATTTCAGCTTGAAGATTTTCAGC
GCCATGTTGTCGGTGGTGGTGGGGGTGCTGTGGCTAGCGTTGACGGCGAC
GGGGAAGATGGCGGAGGTGTTTGGGGAGTAGAGCGAGG
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Coding sequence (CDS) from alignment at scaffold_11:889219..890406-

>mRNA_5897 ID=mRNA_5897|Name=jgi.p|Nanoce1779_2|590753|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_11:889219..890406- (Nannochloropsis oceanica)
GCCCCGACCACCTTTCTGCCTTGGCAGCACTCACGGCTACAGTCCCTCCT
TACAAAGCTTTCTTTGCCGGCGTCCAGTGGGGCATGGGACATAGCACGGG
CCTGATCCTCATGACAGCCGTTTTTGTGAGTGTCGAGCACGAGATTATGG
ACCGGGTGGCGAGTTATTGTGAGTGGCTTGTGGGCTTTTTGATGATTGGC
TTGGGGGCATGGACGATGTGGCGGGCCTTCAAGCGACCATCTTCCCAGCA
CTCGTCATTGACACCAAGAGAGAAAAGGAGTTTTTCCAATGCACCAGCGG
TGGCACCGGGGTTGTTGGTGGGAGAGGACGAGAAGGGGAACAAAAATGCT
CCGACGGTGTACGTTAGGGGGGGGGATGAAGTGGTGACTGTGGAAGCAGA
CGGCAACAGCGCGGTCGTCGTGAAGATGGATGAGAACTCTACCGTCATTC
CCACCTCCGCCTCCCGTGACGATGTGTCCCTCCCACTCAGCCACAAGGAG
AGGACGGAGGAAGCGAAGGAGGGCGCGCCGTCAAGGAGTGGCTGGTGCCG
TCGCCCAAAGCAGTTGAAGGAGAAATTGTTGTCGTTTGTGGTGGGGGTAG
TACACGGCGTGGCGGGACCCGGAGGGATTTTGGGCGTGCTGCCGGCGGTG
CAGCTGCGTGATTGGGGCAAGTCCTCGCTGTATTTGGGGACGTTTTGTGT
GATGTCTTCGTTGACGATGGGTGCCTTTGCCGCTGTGTACGGAGGCGTGA
CGTATGGATTGGGGAAGAAGGTGAGCGAGAGGGATGGAGGAGAGAAGGGT
AAGAAGAGGGCCGAGAGGCTTGATTTCAGCTTGAAGATTTTCAGCGCCAT
GTTGTCGGTGGTGGTGGGGGTGCTGTGGCTAGCGTTGACGGCGACGGGGA
AGATGGCGGAGGTGTTTGGGGAGTAGATGATGGATCGCAGGACAGCCGAG
CACCTGATTAGCCAAGGCTGCGTGATGGGCATCGTCCATGTATTGTCTGG
CCCCGACCACCTTTCTGCCTTGGCAGCACTCACGGCTACAGTCCCTCCTT
ACAAAGCTTTCTTTGCCGGCGTCCAGTGGGGCATGGGACATAGCACGGGC
CTGATCCTCATGACAGCCGTTTTTGTGAGTGTCGAGCACGAGATTATGGA
CCGGGTGGCGAGTTATTGTGAGTGGCTTGTGGGCTTTTTGATGATTGGCT
TGGGGGCATGGACGATGTGGCGGGCCTTCAAGCGACCATCTTCCCAGCAC
TCGTCATTGACACCAAGAGAGAAAAGGAGTTTTTCCAATGCACCAGCGGT
GGCACCGGGGTTGTTGGTGGGAGAGGACGAGAAGGGGAACAAAAATGCTC
CGACGGTGTACGTTAGGGGGGGGGATGAAGTGGTGACTGTGGAAGCAGAC
GGCAACAGCGCGGTCGTCGTGAAGATGGATGAGAACTCTACCGTCATTCC
CACCTCCGCCTCCCGTGACGATGTGTCCCTCCCACTCAGCCACAAGGAGA
GGACGGAGGAAGCGAAGGAGGGCGCGCCGTCAAGGAGTGGCTGGTGCCGT
CGCCCAAAGCAGTTGAAGGAGAAATTGTTGTCGTTTGTGGTGGGGGTAGT
ACACGGCGTGGCGGGACCCGGAGGGATTTTGGGCGTGCTGCCGGCGGTGC
AGCTGCGTGATTGGGGCAAGTCCTCGCTGTATTTGGGGACGTTTTGTGTG
ATGTCTTCGTTGACGATGGGTGCCTTTGCCGCTGTGTACGGAGGCGTGAC
GTATGGATTGGGGAAGAAGGTGAGCGAGAGGGATGGAGGAGAGAAGGGTA
AGAAGAGGGCCGAGAGGCTTGATTTCAGCTTGAAGATTTTCAGCGCCATG
TTGTCGGTGGTGGTGGGGGTGCTGTGGCTAGCGTTGACGGCGACGGGGAA
GATGGCGGAGGTGTTTGGGGAGTAGATGATGGATCGCAGGACAGCCGAGC
ACCTGATTAGCCAAGGCTGCGTGATGGGCATCGTCCATGTATTGTCTG
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Synonyms
Publications