jgi.p|Nanoce1779_2|58438, mRNA_5199 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|58438
Unique NamemRNA_5199
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length991
Alignment locationscaffold_12:721177..722462 -

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Properties
Property NameValue
TranscriptId58524
TrackFilteredModels2
ProteinId58438
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:721177..722462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|58438gene_5199Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|58438mRNA_5199-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5199CDS_5199Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5199 ID=mRNA_5199|Name=jgi.p|Nanoce1779_2|58438|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
AGCTCACAAATCGTGGCGACATCCTCATGCACACAAGACACAGGATACAC
CCGCAAATAAATATCATGGCCAGCCTCACGTTGCTCCTGTCATCCAGGCT
TTTGACCTCTCTTTTCCTATGCCTTTTGATGGCTGCCTTTTGGAGCACGA
CGCTCGCCTTTGTCCCTCCTTGCTGTCACAGCAGCAGCGGCCGCCGCCAA
GTGAAGGCCACGACGACGCGCATGATGGCGGAGCGATTCTACTCCAAATG
GAGCCGGGCGGATTTCGTGCTCAAGAGCGCACTAGCTGCGGCGGCAGTTA
TTCCAGTGATCAAGGGCGGGACCATGGCGCGCGATGCCCAGGCCACCGAG
CGGGTAGTGTTGCCCGTCAAAAATGGCAAACTTGCCACCGACGAAGACGA
GGAAAAAGACAGCCCCCTCGCCTTCTCCTCTGCCAAGGGCGTGCCTCTGC
GTTTCCCCCTCCACAAAAGCCAAGAGCAAGCCCTGTCTGAGCTTCAAGAA
GTGGTCGTCCGCGTCGGAGGCCGCTTGTCTAAGGCCCGTGGGGGTTCTCG
AAGCGATGTGCTCCGTGCCGCGTTCCAGTCGAAGGACGACGATTTGTATT
TCCGATTTGGCGGGGACGGAGGTAGCAGTGGGTATAGCAGTGTGCTGCAG
GCAAGTGTGGGTAGAGATGTGGATAATATGAGATTGATGAATGCATTGGC
GGATGGATTGGCATCTAAGGGGTGGTTGGCGGCGGGCTTTCCCTTATCAT
GTGATCCTGCGATGGGCCAGTATTATTCCCAGGAGTTTAAGTGCACGGTG
TAGTGATGAGCCGTGAGGGCAAGAAATTAATTGACGACATGAAGGGGAAA
TGAAATTGTATGCTCAAGTCCTTCTCGCTTCGTTTTGTTATTCCTTTTAA
AACTAACCATGGACTTGCCCGAGCGCAGACGATACGTGCACAACCTCCTC
CCCCTTCCAATACTTGCCCGGATCACGCCCGCCCTTTAAAT
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protein sequence of jgi.p|Nanoce1779_2|58438

>mRNA_5199-protein ID=mRNA_5199-protein|Name=jgi.p|Nanoce1779_2|58438|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MHTRHRIHPQINIMASLTLLLSSRLLTSLFLCLLMAAFWSTTLAFVPPCC
HSSSGRRQVKATTTRMMAERFYSKWSRADFVLKSALAAAAVIPVIKGGTM
ARDAQATERVVLPVKNGKLATDEDEEKDSPLAFSSAKGVPLRFPLHKSQE
QALSELQEVVVRVGGRLSKARGGSRSDVLRAAFQSKDDDLYFRFGGDGGS
SGYSSVLQASVGRDVDNMRLMNALADGLASKGWLAAGFPLSCDPAMGQYY
SQEFKCTV*
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mRNA from alignment at scaffold_12:721177..722462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5199 ID=mRNA_5199|Name=jgi.p|Nanoce1779_2|58438|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp|location=Sequence derived from alignment at scaffold_12:721177..722462- (Nannochloropsis oceanica)
AGCTCACAAATCGTGGCGACATCCTCATGCACACAAGACACAGGATACAC
CCGCAAATAAATATCATGGCCAGCCTCACGTTGCTCCTGTCATCCAGGCT
TTTGACCTCTCTTTTCCTATGCCTTTTGATGGCTGCCTTTTGGAGCACGA
CGCTCGCCTTTGTCCCTCCTTGCTGTCACAGCAGCAGCGGCCGCCGCCAA
GTGAAGGCCACGACGACGCGCATGATGGCGGAGCGATTCTACTCCAAATG
GAGCCGGGCGGATTTCGTGCTCAAGAGCGCACTAGCTGCGGTACGTTGAA
GTGTGGAAAGCAAGAAGGATGAAGGAAGCGAAACAGGAAGGGGGAGGAAA
AGGGAAGGGGGAGGAAAGTATGGGAAAGTTAAATTACGCAGTACGTAGGC
ATCAATCATCTCACCCTTCCTCCCTCCTCTGCATACCCTCTCTACAGGCG
GCAGTTATTCCAGTGATCAAGGGCGGGACCATGGCGCGCGATGCCCAGGC
CACCGAGCGGGTAGTGTTGCCCGTCAAGTACGTGGAAGGAATAATAGGAG
GGTGGTAGGAAAAGCTTCGACGAGATAGATTCCTTCATTATACTTGTTCT
TCTAATACAGCATTGAAAATTGTGTCAGTTTGTCATAATCCATTTCTTTT
TTCTCCTATTGACAGAAATGGCAAACTTGCCACCGACGAAGACGAGGAAA
AAGACAGCCCCCTCGCCTTCTCCTCTGCCAAGGGCGTGCCTCTGCGTTTC
CCCCTCCACAAAAGCCAAGAGCAAGCCCTGTCTGAGCTTCAAGAAGTGGT
CGTCCGCGTCGGAGGCCGCTTGTCTAAGGCCCGTGGGGGTTCTCGAAGCG
ATGTGCTCCGTGCCGCGTTCCAGTCGAAGGACGACGATTTGTATTTCCGA
TTTGGCGGGGACGGAGGTAGCAGTGGGTATAGCAGTGTGCTGCAGGCAAG
TGTGGGTAGAGATGTGGATAATATGAGATTGATGAATGCATTGGCGGATG
GATTGGCATCTAAGGGGTGGTTGGCGGCGGGCTTTCCCTTATCATGTGAT
CCTGCGATGGGCCAGTATTATTCCCAGGAGTTTAAGTGCACGGTGTAGTG
ATGAGCCGTGAGGGCAAGAAATTAATTGACGACATGAAGGGGAAATGAAA
TTGTATGCTCAAGTCCTTCTCGCTTCGTTTTGTTATTCCTTTTAAAACTA
ACCATGGACTTGCCCGAGCGCAGACGATACGTGCACAACCTCCTCCCCCT
TCCAATACTTGCCCGGATCACGCCCGCCCTTTAAAT
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Coding sequence (CDS) from alignment at scaffold_12:721177..722462-

>mRNA_5199 ID=mRNA_5199|Name=jgi.p|Nanoce1779_2|58438|organism=Nannochloropsis oceanica|type=CDS|length=2331bp|location=Sequence derived from alignment at scaffold_12:721177..722462- (Nannochloropsis oceanica)
AAATGGCAAACTTGCCACCGACGAAGACGAGGAAAAAGACAGCCCCCTCG
CCTTCTCCTCTGCCAAGGGCGTGCCTCTGCGTTTCCCCCTCCACAAAAGC
CAAGAGCAAGCCCTGTCTGAGCTTCAAGAAGTGGTCGTCCGCGTCGGAGG
CCGCTTGTCTAAGGCCCGTGGGGGTTCTCGAAGCGATGTGCTCCGTGCCG
CGTTCCAGTCGAAGGACGACGATTTGTATTTCCGATTTGGCGGGGACGGA
GGTAGCAGTGGGTATAGCAGTGTGCTGCAGGCAAGTGTGGGTAGAGATGT
GGATAATATGAGATTGATGAATGCATTGGCGGATGGATTGGCATCTAAGG
GGTGGTTGGCGGCGGGCTTTCCCTTATCATGTGATCCTGCGATGGGCCAG
TATTATTCCCAGGAGTTTAAGTGCACGGTGTAGGCGGCAGTTATTCCAGT
GATCAAGGGCGGGACCATGGCGCGCGATGCCCAGGCCACCGAGCGGGTAG
TGTTGCCCGTCAAATGCACACAAGACACAGGATACACCCGCAAATAAATA
TCATGGCCAGCCTCACGTTGCTCCTGTCATCCAGGCTTTTGACCTCTCTT
TTCCTATGCCTTTTGATGGCTGCCTTTTGGAGCACGACGCTCGCCTTTGT
CCCTCCTTGCTGTCACAGCAGCAGCGGCCGCCGCCAAGTGAAGGCCACGA
CGACGCGCATGATGGCGGAGCGATTCTACTCCAAATGGAGCCGGGCGGAT
TTCGTGCTCAAGAGCGCACTAGCTGCGAAATGGCAAACTTGCCACCGACG
AAGACGAGGAAAAAGACAGCCCCCTCGCCTTCTCCTCTGCCAAGGGCGTG
CCTCTGCGTTTCCCCCTCCACAAAAGCCAAGAGCAAGCCCTGTCTGAGCT
TCAAGAAGTGGTCGTCCGCGTCGGAGGCCGCTTGTCTAAGGCCCGTGGGG
GTTCTCGAAGCGATGTGCTCCGTGCCGCGTTCCAGTCGAAGGACGACGAT
TTGTATTTCCGATTTGGCGGGGACGGAGGTAGCAGTGGGTATAGCAGTGT
GCTGCAGGCAAGTGTGGGTAGAGATGTGGATAATATGAGATTGATGAATG
CATTGGCGGATGGATTGGCATCTAAGGGGTGGTTGGCGGCGGGCTTTCCC
TTATCATGTGATCCTGCGATGGGCCAGTATTATTCCCAGGAGTTTAAGTG
CACGGTGTAGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCATGGCGC
GCGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAATGCACACAA
GACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGTTGCTC
CTGTCATCCAGGCTTTTGACCTCTCTTTTCCTATGCCTTTTGATGGCTGC
CTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAGCAGCA
GCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGGAGCGA
TTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCACTAGC
TGCGAAATGGCAAACTTGCCACCGACGAAGACGAGGAAAAAGACAGCCCC
CTCGCCTTCTCCTCTGCCAAGGGCGTGCCTCTGCGTTTCCCCCTCCACAA
AAGCCAAGAGCAAGCCCTGTCTGAGCTTCAAGAAGTGGTCGTCCGCGTCG
GAGGCCGCTTGTCTAAGGCCCGTGGGGGTTCTCGAAGCGATGTGCTCCGT
GCCGCGTTCCAGTCGAAGGACGACGATTTGTATTTCCGATTTGGCGGGGA
CGGAGGTAGCAGTGGGTATAGCAGTGTGCTGCAGGCAAGTGTGGGTAGAG
ATGTGGATAATATGAGATTGATGAATGCATTGGCGGATGGATTGGCATCT
AAGGGGTGGTTGGCGGCGGGCTTTCCCTTATCATGTGATCCTGCGATGGG
CCAGTATTATTCCCAGGAGTTTAAGTGCACGGTGTAGGCGGCAGTTATTC
CAGTGATCAAGGGCGGGACCATGGCGCGCGATGCCCAGGCCACCGAGCGG
GTAGTGTTGCCCGTCAAATGCACACAAGACACAGGATACACCCGCAAATA
AATATCATGGCCAGCCTCACGTTGCTCCTGTCATCCAGGCTTTTGACCTC
TCTTTTCCTATGCCTTTTGATGGCTGCCTTTTGGAGCACGACGCTCGCCT
TTGTCCCTCCTTGCTGTCACAGCAGCAGCGGCCGCCGCCAAGTGAAGGCC
ACGACGACGCGCATGATGGCGGAGCGATTCTACTCCAAATGGAGCCGGGC
GGATTTCGTGCTCAAGAGCGCACTAGCTGCG
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Synonyms
Publications