jgi.p|Nanoce1779_2|648625, mRNA_5502 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|648625
Unique NamemRNA_5502
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1101
Alignment locationscaffold_13:575921..577295 +

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Properties
Property NameValue
TranscriptId648711
TrackFilteredModels2
ProteinId648625
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:575921..577295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648625gene_5502Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648625mRNA_5502-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5502CDS_5502Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5502 ID=mRNA_5502|Name=jgi.p|Nanoce1779_2|648625|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp
CCGCCTCGTGTTGGTGCATACCCACGATAATGCTGCCCGAGAAACACAGA
TTCTGCGTAATTCGGAGGAAACACAGACCGAACAAATGCTACCCAGGAAA
TTTTGTGCTTGTGCGTGACTGTATTTGGAGGAATTCAAAAGCAGGCAGCC
ACAGGAATACGCACCCTAGGCAGAATTGAAGAGCGGCCGCCGGCAAACGT
GTCATCAGCGAGCAGCACGACCTCTGACAGCGCGATGCTATTATGCCCAC
CGTGTACGATAACCCAGAGATATTTTACCCTTCTGACAGGCTGAAAAGGT
CTCGGGCGCCTGCCCTGGACAATGCTGCCGCTTGTCGCCTCCAGCAGCCT
CCTGCTCGTCAGCCGCTCGACCTCCTCACTCCTCCTTCGCCGGAGCAGAG
GCATACATAGTTGGAGACGATGGCTTGGCACCTCATCATCACCCACGGGG
GAACAAGACTTGTCGGGCTTCGAGTTACGACAGTATGGCAAGGACGATCC
TCCGCGATTGACGTGTAAGACTTGCTCGCATATCCTTTATGACAACCCTA
AGATAATAATCGGCGCCGTCATTACCTACCGGGACCCAACTGGAAAACCT
CTCTTCCTCCTCTGTCGTCGAGCAATTCCTCCTCGTAAAGGCCTCCTCAA
TCTGTGCGCAGGGTACATGGAAAAAGGCGAGTCCCTTTCCCAGGCCGCCC
AGCGCGAAGCCCGGGAAGAAGCGGGAGCGTCGATAGAAGTCGGCTCCATC
CTTGGAGTCTACGACATTTCTCACATCGGACAAGTTCATATTTATTTCAA
GGCAACACTAAAGTCCCCAGACATCGAACCCGGATATGAGAGTCAGGACG
CCCGATTGGTCCGTTGGGAAGATATTGAGTGGGAGGAGCTTGCCTTCCCG
ACGGTGTCATGGGCACTCATGGCCTGGAGGGAGCAGGAGGAGGGGGGGGG
GGGGGGCGGGCCGTTGCGGAACCCTGTGTTGAAGGGACATGAGGGGAGCA
CGAATGTGTGGTATCGACCAGATAAGGGCGGCCTGATATTTGACGACACT
TGGCTGCATCGGAGGAAGGAGGGTGGGGGGACGGGAAAAGGTGGGAGATG
A
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protein sequence of jgi.p|Nanoce1779_2|648625

>mRNA_5502-protein ID=mRNA_5502-protein|Name=jgi.p|Nanoce1779_2|648625|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MLPLVASSSLLLVSRSTSSLLLRRSRGIHSWRRWLGTSSSPTGEQDLSGF
ELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRR
AIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDIS
HIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALM
AWREQEEGGGGGGPLRNPVLKGHEGSTNVWYRPDKGGLIFDDTWLHRRKE
GGGTGKGGR*
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mRNA from alignment at scaffold_13:575921..577295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5502 ID=mRNA_5502|Name=jgi.p|Nanoce1779_2|648625|organism=Nannochloropsis oceanica|type=mRNA|length=1375bp|location=Sequence derived from alignment at scaffold_13:575921..577295+ (Nannochloropsis oceanica)
CCGCCTCGTGTTGGTGCATACCCACGATAATGCTGCCCGAGAAACACAGA
TTCTGCGTAATTCGGAGGAAACACAGACCGAACAAATGCTACCCAGGAAA
TTTTGTGCTTGTGCGTGACTGTATTTGGAGGAATTCAAAAGCAGGCAGCC
ACAGGAATACGCACCCTAGGCAGAATTGAAGAGCGGCCGCCGGCAAACGT
GTCATCAGCGAGCAGCACGACCTCTGACAGCGCGATGCTATTATGCCCAC
CGTGTACGATAACCCAGAGATATTTTACCCTTCTGACAGGCTGAAAAGGT
CTCGGGCGCCTGCCCTGGACAATGCTGCCGCTTGTCGCCTCCAGCAGCCT
CCTGCTCGTCAGCCGCTCGACCTCCTCACTCCTCCTTCGCCGGAGCAGAG
GCATACATAGTTGGAGACGATGGCTTGGCACCTCATCATCACCCACGGGG
GAACAAGACTTGTCGGGCTTCGAGTTACGACAGTATGGCAAGGACGATCC
TCCGCGATTGACGTGTAAGACTTGCTCGCATATCCTTTATGACAACCCTA
AGGTAAGCACAAGTGCGTAGGAAAACACCCTCCCTCCCCTCTATTCCGTC
TCTCACCCCTTTCCCTCAGACACAAAGCATCATACGATGAATGTTTCCCT
GCCGCAAGAAGTTTGTAATCGTATGATCACTCACACATACAGGATGCTCA
CCGCATTCACTTCCATCTCCCTCCCTCCGTTCTCTACCGCAGATAATAAT
CGGCGCCGTCATTACCTACCGGGACCCAACTGGAAAACCTCTCTTCCTCC
TCTGTCGTCGAGCAATTCCTCCTCGTAAAGGCCTCCTCAATCTGTGCGCA
GGGTACATGGAAAAAGGCGAGTCCCTTTCCCAGGCCGCCCAGCGCGAAGC
CCGGGAAGAAGCGGGAGCGTCGATAGAAGTCGGCTCCATCCTTGGAGTCT
ACGACATTTCTCACATCGGACAAGTTCATATTTATTTCAAGGTAAATCCC
AATATGTCAAGGATGTTGCTTTTAAATCCACGCTTATATCGATCTTCTCC
ATTTCCCCCCTCCCTTCATGGCCAGGCAACACTAAAGTCCCCAGACATCG
AACCCGGATATGAGAGTCAGGACGCCCGATTGGTCCGTTGGGAAGATATT
GAGTGGGAGGAGCTTGCCTTCCCGACGGTGTCATGGGCACTCATGGCCTG
GAGGGAGCAGGAGGAGGGGGGGGGGGGGGGCGGGCCGTTGCGGAACCCTG
TGTTGAAGGGACATGAGGGGAGCACGAATGTGTGGTATCGACCAGATAAG
GGCGGCCTGATATTTGACGACACTTGGCTGCATCGGAGGAAGGAGGGTGG
GGGGACGGGAAAAGGTGGGAGATGA
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Coding sequence (CDS) from alignment at scaffold_13:575921..577295+

>mRNA_5502 ID=mRNA_5502|Name=jgi.p|Nanoce1779_2|648625|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_13:575921..577295+ (Nannochloropsis oceanica)
ATGCTGCCGCTTGTCGCCTCCAGCAGCCTCCTGCTCGTCAGCCGCTCGAC
CTCCTCACTCCTCCTTCGCCGGAGCAGAGGCATACATAGTTGGAGACGAT
GGCTTGGCACCTCATCATCACCCACGGGGGAACAAGACTTGTCGGGCTTC
GAGTTACGACAGTATGGCAAGGACGATCCTCCGCGATTGACGTGTAAGAC
TTGCTCGCATATCCTTTATGACAACCCTAAGATAATAATCGGCGCCGTCA
TTACCTACCGGGACCCAACTGGAAAACCTCTCTTCCTCCTCTGTCGTCGA
GCAATTCCTCCTCGTAAAGGCCTCCTCAATCTGTGCGCAGGGTACATGGA
AAAAGGCGAGTCCCTTTCCCAGGCCGCCCAGCGCGAAGCCCGGGAAGAAG
CGGGAGCGTCGATAGAAGTCGGCTCCATCCTTGGAGTCTACGACATTTCT
CACATCGGACAAGTTCATATTTATTTCAAGGCAACACTAAAGTCCCCAGA
CATCGAACCCGGATATGAGAGTCAGGACGCCCGATTGGTCCGTTGGGAAG
ATATTGAGTGGGAGGAGCTTGCCTTCCCGACGGTGTCATGGGCACTCATG
GCCTGGAGGGAGCAGGAGGAGGGGGGGGGGGGGGGCGGGCCGTTGCGGAA
CCCTGTGTTGAAGGGACATGAGGGGAGCACGAATGTGTGGTATCGACCAG
ATAAGGGCGGCCTGATATTTGACGACACTTGGCTGCATCGGAGGAAGGAG
GGTGGGGGGACGGGAAAAGGTGGGAGATGAATGCTGCCGCTTGTCGCCTC
CAGCAGCCTCCTGCTCGTCAGCCGCTCGACCTCCTCACTCCTCCTTCGCC
GGAGCAGAGGCATACATAGTTGGAGACGATGGCTTGGCACCTCATCATCA
CCCACGGGGGAACAAGACTTGTCGGGCTTCGAGTTACGACAGTATGGCAA
GGACGATCCTCCGCGATTGACGTGTAAGACTTGCTCGCATATCCTTTATG
ACAACCCTAAGATAATAATCGGCGCCGTCATTACCTACCGGGACCCAACT
GGAAAACCTCTCTTCCTCCTCTGTCGTCGAGCAATTCCTCCTCGTAAAGG
CCTCCTCAATCTGTGCGCAGGGTACATGGAAAAAGGCGAGTCCCTTTCCC
AGGCCGCCCAGCGCGAAGCCCGGGAAGAAGCGGGAGCGTCGATAGAAGTC
GGCTCCATCCTTGGAGTCTACGACATTTCTCACATCGGACAAGTTCATAT
TTATTTCAAGGCAACACTAAAGTCCCCAGACATCGAACCCGGATATGAGA
GTCAGGACGCCCGATTGGTCCGTTGGGAAGATATTGAGTGGGAGGAGCTT
GCCTTCCCGACGGTGTCATGGGCACTCATGGCCTGGAGGGAGCAGGAGGA
GGGGGGGGGGGGGGGCGGGCCGTTGCGGAACCCTGTGTTGAAGGGACATG
AGGGGAGCACGAATGTGTGGTATCGACCAGATAAGGGCGGCCTGATATTT
GACGACACTTGGCTGCATCGGAGGAAGGAGGGTGGGGGGACGGGAAAAGG
TGGGAGATGAATGCTGCCGCTTGTCGCCTCCAGCAGCCTCCTGCTCGTCA
GCCGCTCGACCTCCTCACTCCTCCTTCGCCGGAGCAGAGGCATACATAGT
TGGAGACGATGGCTTGGCACCTCATCATCACCCACGGGGGAACAAGACTT
GTCGGGCTTCGAGTTACGACAGTATGGCAAGGACGATCCTCCGCGATTGA
CGTGTAAGACTTGCTCGCATATCCTTTATGACAACCCTAAGATAATAATC
GGCGCCGTCATTACCTACCGGGACCCAACTGGAAAACCTCTCTTCCTCCT
CTGTCGTCGAGCAATTCCTCCTCGTAAAGGCCTCCTCAATCTGTGCGCAG
GGTACATGGAAAAAGGCGAGTCCCTTTCCCAGGCCGCCCAGCGCGAAGCC
CGGGAAGAAGCGGGAGCGTCGATAGAAGTCGGCTCCATCCTTGGAGTCTA
CGACATTTCTCACATCGGACAAGTTCATATTTATTTCAAGGCAACACTAA
AGTCCCCAGACATCGAACCCGGATATGAGAGTCAGGACGCCCGATTGGTC
CGTTGGGAAGATATTGAGTGGGAGGAGCTTGCCTTCCCGACGGTGTCATG
GGCACTCATGGCCTGGAGGGAGCAGGAGGAGGGGGGGGGGGGGGGCGGGC
CGTTGCGGAACCCTGTGTTGAAGGGACATGAGGGGAGCACGAATGTGTGG
TATCGACCAGATAAGGGCGGCCTGATATTTGACGACACTTGGCTGCATCG
GAGGAAGGAGGGTGGGGGGACGGGAAAAGGTGGGAGATGA
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Synonyms
Publications