jgi.p|Nanoce1779_2|529997, mRNA_6114 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529997
Unique NamemRNA_6114
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1761
Alignment locationscaffold_14:548894..550801 +

Link to JBrowse

Properties
Property NameValue
TranscriptId530083
TrackFilteredModels2
ProteinId529997
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:548894..550801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529997gene_6114Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529997mRNA_6114-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6114CDS_6114Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6114 ID=mRNA_6114|Name=jgi.p|Nanoce1779_2|529997|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp
ATGACACGACCAAAAAAACGAGGAAGCCTGTCCAAAGCCGACCCCGAACA
TGACCTCCTTCTGCTCCTCCGCCTGCTCTATGGCCTTAACCGTCACCTCG
CCTCGCTCCTTAACCCAATCTTCTCCTCCTGCTCCCTCATTTCCTCCTCA
TCCTCTTCCTCCTCCTCAACAGCAGCGGAAGCAGCAGCATCACAAGCAGA
AGTGCAAAGACTGGTGGCACGAGGAGGGCTGAGAGAGGAAGACTGGATAA
ATAAACCGCTAAGTGAATGCATGGCACAGGAGCTGCAGGACCCTCTTGCC
CTCGCCACGCAGCAGCTCCCCGGGTGGTGTGACCAGCTATTAACCTCCTG
TCCATTTCTCCTCCCTTTCCTCGTGCGGAAGGAATATTTTTACCTGTCTT
CTTTTGGGTTAGGAAGGGCAGTGCATCGGTTGTTGCTACAGCACCAGAAG
CGTGGAGGAGGGGGGGGAAGAGGAGGAGGGGATGCAAGTGGTGGCGGCAG
AGGAGCAGGAGGAGGAGGGAACGCACTGCAGCAGCTTAAGGTGCGGATTT
CGCGTCACAAGTTGTTGGCGTCAGCAGAAAAAATTTTGGCAGAGTATGGA
CGTAAAAGGGTGATGCTTGAAACTGAATTTCAAAATGAGCCGGGCACGGG
TTCAGGGCCGACGGCCGAGTTTTTTTCGTTGGTTTCAAAGGAGCTACAGG
ACCCGAGGTTGGGATTGTGGAGAGGGGGGGGTCAGGGTCTGCGCGAAGGG
GGGCTCTACCCGCAGCCGTGGGGAGGAGGGGAAGAGGGGGAGAGGGAGAA
GGTGTTGAGGCGATTTATGTGTCTAGGCCGGTTGGTGGGGCAGGCGCTCT
TGGATGAACGAATGCTCGATTTTCGGTTTGCGGCCCCATTGGTGGGAGCT
TTGGCGGGAGAAATGCCGTGTCAGTCCTTGCCGGCAGCACTTCAGGAAAT
GGGAACCGTGGACCCAGGTCTGGCAAGACAGCTGCAGGCGCTGATTGGGA
GTTGTGGGGTGGCTCCTTGGTGGGTGGAGGGAGGTGGGGATGGAAGGGAG
GAGGATAGGAAGGAGGAGAGGGGGGATGAGGTGGCGGATTTGTGTCTGAC
TTTTTGTTTGCCGGGACATCCGTCGATTGGACTGACGTCCTCTTCAAGAA
ATTTCATAACAGCAGTGGCATCAGACCAAGAAAATGACGAAGAAGACGTG
ACTAGCACCAACCTCCCCCTCTACATTCAGCGCGTCCTCCAAGCCAGCCT
CACCGAAACTGTCTCCCCACAAATCACCTCCCTCCTCGCCGGACTTTCGG
ACGTGCTCATGCCGGCTTCCCTGAGGATTTTTACGAGAGAGGAAATTATG
GCAATGATTGCGGGCGTGGGATCAGAAATGGGTGAGGATCCAGAGGAAAT
CCTCGAGGCCATATCATGTGATCATGGGTACACGCGAGGGAGTCAGGCGG
TGAGGTGGTTGGTCGAGATTTTGGCGGAGATGGAAGGAAAGGAACAGAGA
CAATTTTTGATGTTCGTGACGGGGAGCCCCGGGCTGCCTGTAGGGGGGCT
GATGGGGTGCCTGCCGAGGCTGACGGTAGTGAAGAAGGTGGCCGAGGGGC
ATTTGAGGGCGGAGGGGCAGGGAGGAGTGGATAAGATGTTGCCGAGTGCG
TCGACGTGCACGAATTATTTGAAATTGCCCGATTACTCGAGTAAGACTGT
TATGAGGGAAAGGTTGCTGCTCAGTTTGAGTTATGGGCAGCATTCCTTTT
ACTTGTCCTAG
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protein sequence of jgi.p|Nanoce1779_2|529997

>mRNA_6114-protein ID=mRNA_6114-protein|Name=jgi.p|Nanoce1779_2|529997|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MTRPKKRGSLSKADPEHDLLLLLRLLYGLNRHLASLLNPIFSSCSLISSS
SSSSSSTAAEAAASQAEVQRLVARGGLREEDWINKPLSECMAQELQDPLA
LATQQLPGWCDQLLTSCPFLLPFLVRKEYFYLSSFGLGRAVHRLLLQHQK
RGGGGGRGGGDASGGGRGAGGGGNALQQLKVRISRHKLLASAEKILAEYG
RKRVMLETEFQNEPGTGSGPTAEFFSLVSKELQDPRLGLWRGGGQGLREG
GLYPQPWGGGEEGEREKVLRRFMCLGRLVGQALLDERMLDFRFAAPLVGA
LAGEMPCQSLPAALQEMGTVDPGLARQLQALIGSCGVAPWWVEGGGDGRE
EDRKEERGDEVADLCLTFCLPGHPSIGLTSSSRNFITAVASDQENDEEDV
TSTNLPLYIQRVLQASLTETVSPQITSLLAGLSDVLMPASLRIFTREEIM
AMIAGVGSEMGEDPEEILEAISCDHGYTRGSQAVRWLVEILAEMEGKEQR
QFLMFVTGSPGLPVGGLMGCLPRLTVVKKVAEGHLRAEGQGGVDKMLPSA
STCTNYLKLPDYSSKTVMRERLLLSLSYGQHSFYLS*
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mRNA from alignment at scaffold_14:548894..550801+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6114 ID=mRNA_6114|Name=jgi.p|Nanoce1779_2|529997|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at scaffold_14:548894..550801+ (Nannochloropsis oceanica)
ATGACACGACCAAAAAAACGAGGAAGCCTGTCCAAAGCCGACCCCGAACA TGACCTCCTTCTGCTCCTCCGCCTGCTCTATGGCCTTAACCGTCACCTCG CCTCGCTCCTTAACCCAATCTTCTCCTCCTGCTCCCTCATTTCCTCCTCA TCCTCTTCCTCCTCCTCAACAGCAGCGGAAGCAGCAGCATCACAAGCAGA AGTGCAAAGACTGGTGGCACGAGGAGGGCTGAGAGAGGAAGACTGGATAA ATAAACCGCTAAGTGAATGCATGGCACAGGAGCTGCAGGACCCTCTTGCC CTCGCCACGCAGCAGCTCCCCGGGTGGTGTGACCAGCTATTAACCTCCTG TCCATTTCTCCTCCCTTTCCTCGTGCGGAAGGAATATTTTTACCTGTCTT CTTTTGGGTTAGGAAGGGCAGTGCATCGGTTGTTGCTACAGCACCAGAAG CGTGGAGGAGGGGGGGGAAGAGGAGGAGGGGATGCAAGTGGTGGCGGCAG AGGAGCAGGAGGAGGAGGGAACGGTATAGGGCGGCATGGTTCTCACCATT ACTCCCAGCAACAGCAGCAGCAACGAGTGCCTGCTACAGCACTGCAGCAG CTTAAGGTGCGGATTTCGCGTCACAAGTTGTTGGCGTCAGCAGAAAAAAT TTTGGCAGAGTATGGACGTAAAAGGGTGATGCTTGAAACTGAATTTCAAA ATGAGCCGGGCACGGGTTCAGGGCCGACGGCCGAGTTTTTTTCGTTGGTT TCAAAGGAGCTACAGGACCCGAGGTTGGGATTGTGGAGAGGGGGGGGTCA GGGTCTGCGCGAAGGGGGGCTCTACCCGCAGCCGTGGGGAGGAGGGGAAG AGGGGGAGAGGGGTAAGGAAGCGGGGAGGAAGGGGAAGGGGAAGGAGAAG GAGAAGGCTGGCAAGGAGGTCGAGGAAAGGGAGAGTGAGAGAGAGAAGGT GTTGAGGCGATTTATGTGTCTAGGCCGGTTGGTGGGGCAGGCGCTCTTGG ATGAACGAATGCTCGATTTTCGGTTTGCGGCCCCATTGGTGGGAGCTTTG GCGGGAGAAATGCCGTGTCAGTCCTTGCCGGCAGCACTTCAGGAAATGGG AACCGTGGACCCAGGTCTGGCAAGACAGCTGCAGGCGCTGATTGGGAGTT GTGGGGTGGCTCCTTGGTGGGTGGAGGGAGGTGGGGATGGAAGGGAGGAG GATAGGAAGGAGGAGAGGGGGGATGAGGTGGCGGATTTGTGTCTGACTTT TTGTTTGCCGGGACATCCGTCGATTGGACTGACGTCCTCTTCAAGAAATT TCATAACAGCAGTGGCATCAGACCAAGAAAATGACGAAGAAGACGTGACT AGCACCAACCTCCCCCTCTACATTCAGCGCGTCCTCCAAGCCAGCCTCAC CGAAACTGTCTCCCCACAAATCACCTCCCTCCTCGCCGGACTTTCGGACG TGCTCATGCCGGCTTCCCTGAGGATTTTTACGAGAGAGGAAATTATGGCA ATGATTGCGGGCGTGGGATCAGAAATGGGTGAGGATCCAGAGGAAATCCT CGAGGCCATATCATGTGATCATGGGTACACGCGAGGGAGTCAGGCGGTGA GGTGGTTGGTCGAGATTTTGGCGGAGATGGAAGGAAAGGAACAGAGACAA TTTTTGATGTTCGTGACGGGGAGCCCCGGGCTGCCTGTAGGGGGGCTGAT GGGGTGCCTGCCGAGGCTGACGGTAGTGAAGAAGGTGGCCGAGGGGCATT TGAGGGCGGAGGGGCAGGGAGGAGTGGATAAGATGTTGCCGAGTGCGTCG ACGTGCACGAATTATTTGAAATTGCCCGATTACTCGAGTAAGACTGTTAT GAGGGAAAGGTTGCTGCTCAGTTTGAGTTATGGGCAGCATTCCTTTTACT TGTCCTAG
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Coding sequence (CDS) from alignment at scaffold_14:548894..550801+

>mRNA_6114 ID=mRNA_6114|Name=jgi.p|Nanoce1779_2|529997|organism=Nannochloropsis oceanica|type=CDS|length=5283bp|location=Sequence derived from alignment at scaffold_14:548894..550801+ (Nannochloropsis oceanica)
ATGACACGACCAAAAAAACGAGGAAGCCTGTCCAAAGCCGACCCCGAACA
TGACCTCCTTCTGCTCCTCCGCCTGCTCTATGGCCTTAACCGTCACCTCG
CCTCGCTCCTTAACCCAATCTTCTCCTCCTGCTCCCTCATTTCCTCCTCA
TCCTCTTCCTCCTCCTCAACAGCAGCGGAAGCAGCAGCATCACAAGCAGA
AGTGCAAAGACTGGTGGCACGAGGAGGGCTGAGAGAGGAAGACTGGATAA
ATAAACCGCTAAGTGAATGCATGGCACAGGAGCTGCAGGACCCTCTTGCC
CTCGCCACGCAGCAGCTCCCCGGGTGGTGTGACCAGCTATTAACCTCCTG
TCCATTTCTCCTCCCTTTCCTCGTGCGGAAGGAATATTTTTACCTGTCTT
CTTTTGGGTTAGGAAGGGCAGTGCATCGGTTGTTGCTACAGCACCAGAAG
CGTGGAGGAGGGGGGGGAAGAGGAGGAGGGGATGCAAGTGGTGGCGGCAG
AGGAGCAGGAGGAGGAGGGAACGCACTGCAGCAGCTTAAGGTGCGGATTT
CGCGTCACAAGTTGTTGGCGTCAGCAGAAAAAATTTTGGCAGAGTATGGA
CGTAAAAGGGTGATGCTTGAAACTGAATTTCAAAATGAGCCGGGCACGGG
TTCAGGGCCGACGGCCGAGTTTTTTTCGTTGGTTTCAAAGGAGCTACAGG
ACCCGAGGTTGGGATTGTGGAGAGGGGGGGGTCAGGGTCTGCGCGAAGGG
GGGCTCTACCCGCAGCCGTGGGGAGGAGGGGAAGAGGGGGAGAGGGAGAA
GGTGTTGAGGCGATTTATGTGTCTAGGCCGGTTGGTGGGGCAGGCGCTCT
TGGATGAACGAATGCTCGATTTTCGGTTTGCGGCCCCATTGGTGGGAGCT
TTGGCGGGAGAAATGCCGTGTCAGTCCTTGCCGGCAGCACTTCAGGAAAT
GGGAACCGTGGACCCAGGTCTGGCAAGACAGCTGCAGGCGCTGATTGGGA
GTTGTGGGGTGGCTCCTTGGTGGGTGGAGGGAGGTGGGGATGGAAGGGAG
GAGGATAGGAAGGAGGAGAGGGGGGATGAGGTGGCGGATTTGTGTCTGAC
TTTTTGTTTGCCGGGACATCCGTCGATTGGACTGACGTCCTCTTCAAGAA
ATTTCATAACAGCAGTGGCATCAGACCAAGAAAATGACGAAGAAGACGTG
ACTAGCACCAACCTCCCCCTCTACATTCAGCGCGTCCTCCAAGCCAGCCT
CACCGAAACTGTCTCCCCACAAATCACCTCCCTCCTCGCCGGACTTTCGG
ACGTGCTCATGCCGGCTTCCCTGAGGATTTTTACGAGAGAGGAAATTATG
GCAATGATTGCGGGCGTGGGATCAGAAATGGGTGAGGATCCAGAGGAAAT
CCTCGAGGCCATATCATGTGATCATGGGTACACGCGAGGGAGTCAGGCGG
TGAGGTGGTTGGTCGAGATTTTGGCGGAGATGGAAGGAAAGGAACAGAGA
CAATTTTTGATGTTCGTGACGGGGAGCCCCGGGCTGCCTGTAGGGGGGCT
GATGGGGTGCCTGCCGAGGCTGACGGTAGTGAAGAAGGTGGCCGAGGGGC
ATTTGAGGGCGGAGGGGCAGGGAGGAGTGGATAAGATGTTGCCGAGTGCG
TCGACGTGCACGAATTATTTGAAATTGCCCGATTACTCGAGTAAGACTGT
TATGAGGGAAAGGTTGCTGCTCAGTTTGAGTTATGGGCAGCATTCCTTTT
ACTTGTCCTAGATGACACGACCAAAAAAACGAGGAAGCCTGTCCAAAGCC
GACCCCGAACATGACCTCCTTCTGCTCCTCCGCCTGCTCTATGGCCTTAA
CCGTCACCTCGCCTCGCTCCTTAACCCAATCTTCTCCTCCTGCTCCCTCA
TTTCCTCCTCATCCTCTTCCTCCTCCTCAACAGCAGCGGAAGCAGCAGCA
TCACAAGCAGAAGTGCAAAGACTGGTGGCACGAGGAGGGCTGAGAGAGGA
AGACTGGATAAATAAACCGCTAAGTGAATGCATGGCACAGGAGCTGCAGG
ACCCTCTTGCCCTCGCCACGCAGCAGCTCCCCGGGTGGTGTGACCAGCTA
TTAACCTCCTGTCCATTTCTCCTCCCTTTCCTCGTGCGGAAGGAATATTT
TTACCTGTCTTCTTTTGGGTTAGGAAGGGCAGTGCATCGGTTGTTGCTAC
AGCACCAGAAGCGTGGAGGAGGGGGGGGAAGAGGAGGAGGGGATGCAAGT
GGTGGCGGCAGAGGAGCAGGAGGAGGAGGGAACGCACTGCAGCAGCTTAA
GGTGCGGATTTCGCGTCACAAGTTGTTGGCGTCAGCAGAAAAAATTTTGG
CAGAGTATGGACGTAAAAGGGTGATGCTTGAAACTGAATTTCAAAATGAG
CCGGGCACGGGTTCAGGGCCGACGGCCGAGTTTTTTTCGTTGGTTTCAAA
GGAGCTACAGGACCCGAGGTTGGGATTGTGGAGAGGGGGGGGTCAGGGTC
TGCGCGAAGGGGGGCTCTACCCGCAGCCGTGGGGAGGAGGGGAAGAGGGG
GAGAGGGAGAAGGTGTTGAGGCGATTTATGTGTCTAGGCCGGTTGGTGGG
GCAGGCGCTCTTGGATGAACGAATGCTCGATTTTCGGTTTGCGGCCCCAT
TGGTGGGAGCTTTGGCGGGAGAAATGCCGTGTCAGTCCTTGCCGGCAGCA
CTTCAGGAAATGGGAACCGTGGACCCAGGTCTGGCAAGACAGCTGCAGGC
GCTGATTGGGAGTTGTGGGGTGGCTCCTTGGTGGGTGGAGGGAGGTGGGG
ATGGAAGGGAGGAGGATAGGAAGGAGGAGAGGGGGGATGAGGTGGCGGAT
TTGTGTCTGACTTTTTGTTTGCCGGGACATCCGTCGATTGGACTGACGTC
CTCTTCAAGAAATTTCATAACAGCAGTGGCATCAGACCAAGAAAATGACG
AAGAAGACGTGACTAGCACCAACCTCCCCCTCTACATTCAGCGCGTCCTC
CAAGCCAGCCTCACCGAAACTGTCTCCCCACAAATCACCTCCCTCCTCGC
CGGACTTTCGGACGTGCTCATGCCGGCTTCCCTGAGGATTTTTACGAGAG
AGGAAATTATGGCAATGATTGCGGGCGTGGGATCAGAAATGGGTGAGGAT
CCAGAGGAAATCCTCGAGGCCATATCATGTGATCATGGGTACACGCGAGG
GAGTCAGGCGGTGAGGTGGTTGGTCGAGATTTTGGCGGAGATGGAAGGAA
AGGAACAGAGACAATTTTTGATGTTCGTGACGGGGAGCCCCGGGCTGCCT
GTAGGGGGGCTGATGGGGTGCCTGCCGAGGCTGACGGTAGTGAAGAAGGT
GGCCGAGGGGCATTTGAGGGCGGAGGGGCAGGGAGGAGTGGATAAGATGT
TGCCGAGTGCGTCGACGTGCACGAATTATTTGAAATTGCCCGATTACTCG
AGTAAGACTGTTATGAGGGAAAGGTTGCTGCTCAGTTTGAGTTATGGGCA
GCATTCCTTTTACTTGTCCTAGATGACACGACCAAAAAAACGAGGAAGCC
TGTCCAAAGCCGACCCCGAACATGACCTCCTTCTGCTCCTCCGCCTGCTC
TATGGCCTTAACCGTCACCTCGCCTCGCTCCTTAACCCAATCTTCTCCTC
CTGCTCCCTCATTTCCTCCTCATCCTCTTCCTCCTCCTCAACAGCAGCGG
AAGCAGCAGCATCACAAGCAGAAGTGCAAAGACTGGTGGCACGAGGAGGG
CTGAGAGAGGAAGACTGGATAAATAAACCGCTAAGTGAATGCATGGCACA
GGAGCTGCAGGACCCTCTTGCCCTCGCCACGCAGCAGCTCCCCGGGTGGT
GTGACCAGCTATTAACCTCCTGTCCATTTCTCCTCCCTTTCCTCGTGCGG
AAGGAATATTTTTACCTGTCTTCTTTTGGGTTAGGAAGGGCAGTGCATCG
GTTGTTGCTACAGCACCAGAAGCGTGGAGGAGGGGGGGGAAGAGGAGGAG
GGGATGCAAGTGGTGGCGGCAGAGGAGCAGGAGGAGGAGGGAACGCACTG
CAGCAGCTTAAGGTGCGGATTTCGCGTCACAAGTTGTTGGCGTCAGCAGA
AAAAATTTTGGCAGAGTATGGACGTAAAAGGGTGATGCTTGAAACTGAAT
TTCAAAATGAGCCGGGCACGGGTTCAGGGCCGACGGCCGAGTTTTTTTCG
TTGGTTTCAAAGGAGCTACAGGACCCGAGGTTGGGATTGTGGAGAGGGGG
GGGTCAGGGTCTGCGCGAAGGGGGGCTCTACCCGCAGCCGTGGGGAGGAG
GGGAAGAGGGGGAGAGGGAGAAGGTGTTGAGGCGATTTATGTGTCTAGGC
CGGTTGGTGGGGCAGGCGCTCTTGGATGAACGAATGCTCGATTTTCGGTT
TGCGGCCCCATTGGTGGGAGCTTTGGCGGGAGAAATGCCGTGTCAGTCCT
TGCCGGCAGCACTTCAGGAAATGGGAACCGTGGACCCAGGTCTGGCAAGA
CAGCTGCAGGCGCTGATTGGGAGTTGTGGGGTGGCTCCTTGGTGGGTGGA
GGGAGGTGGGGATGGAAGGGAGGAGGATAGGAAGGAGGAGAGGGGGGATG
AGGTGGCGGATTTGTGTCTGACTTTTTGTTTGCCGGGACATCCGTCGATT
GGACTGACGTCCTCTTCAAGAAATTTCATAACAGCAGTGGCATCAGACCA
AGAAAATGACGAAGAAGACGTGACTAGCACCAACCTCCCCCTCTACATTC
AGCGCGTCCTCCAAGCCAGCCTCACCGAAACTGTCTCCCCACAAATCACC
TCCCTCCTCGCCGGACTTTCGGACGTGCTCATGCCGGCTTCCCTGAGGAT
TTTTACGAGAGAGGAAATTATGGCAATGATTGCGGGCGTGGGATCAGAAA
TGGGTGAGGATCCAGAGGAAATCCTCGAGGCCATATCATGTGATCATGGG
TACACGCGAGGGAGTCAGGCGGTGAGGTGGTTGGTCGAGATTTTGGCGGA
GATGGAAGGAAAGGAACAGAGACAATTTTTGATGTTCGTGACGGGGAGCC
CCGGGCTGCCTGTAGGGGGGCTGATGGGGTGCCTGCCGAGGCTGACGGTA
GTGAAGAAGGTGGCCGAGGGGCATTTGAGGGCGGAGGGGCAGGGAGGAGT
GGATAAGATGTTGCCGAGTGCGTCGACGTGCACGAATTATTTGAAATTGC
CCGATTACTCGAGTAAGACTGTTATGAGGGAAAGGTTGCTGCTCAGTTTG
AGTTATGGGCAGCATTCCTTTTACTTGTCCTAG
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Synonyms
Publications