jgi.p|Nanoce1779_2|83632, mRNA_6173 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|83632
Unique NamemRNA_6173
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length661
Alignment locationscaffold_14:701224..701884 -

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Properties
Property NameValue
TranscriptId83718
TrackFilteredModels2
ProteinId83632
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:701224..701884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|83632gene_6173Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|83632mRNA_6173-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6173CDS_6173Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6173 ID=mRNA_6173|Name=jgi.p|Nanoce1779_2|83632|organism=Nannochloropsis oceanica|type=mRNA|length=661bp
CGTGACCACGCTCTGCTCATGCCAATGTGATTACCGCAGTTTAGCCATCT
AGCTTGCGACGAGCGTGCGTGCGACAATCCCAGGGCAGGGCAGAGGAGGA
AGAAGCTGCAAGGCTCCGTTTGGCCCCGCTTCAGCTCTTCGCGCCATGGC
CTCCCTCTTTTCCTTTTGCCTTCACCTCTCACGCCGCCTCCACACATGCA
GAGCGAACATAACACAAGACGCCCGTAACGAGGCTGGTCGTCTCATTGTC
AAGGGTTGTGTGGGTCAGTCAAAACGGTCCACTGCGTTTGTCGAACTCTG
CTTTTGGCCCTGCTTGTGGTTGAAGACAGGAAGCGGCGATGATCACAAAT
CCGTGACCGTGAGCCAACACCACCCTAAATGCCCTAGGTCCCAGGCGCCC
CACTGCACGACGGACATTGGTGTGGGCGCACTGTGCTGCGACAGGCTGGT
AGCTGGCTTTGCTGCCAGCCGTGAGGAGGGGAAAACATTTCACATTTCTT
CCTTTTCTCGCGCACACCACGACACGTCCTCGCTAACCCTATTCCCTTCA
TGACATGACAACAGCAGGGACTGCCGCCAACACGAGGAGGGCCAGGCACA
TCATTGTCTACTCTTATTGACGACGACAGAAGGGAGGTGATCGACTCTTA
GCATCTGCACC
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protein sequence of jgi.p|Nanoce1779_2|83632

>mRNA_6173-protein ID=mRNA_6173-protein|Name=jgi.p|Nanoce1779_2|83632|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MASLFSFCLHLSRRLHTCRANITQDARNEAGRLIVKGCVGQSKRSTAFVE
LCFWPCLWLKTGSGDDHKSVTVSQHHPKCPRSQAPHCTTDIGVGALCCDR
LVAGFAASREEGKTFHISSFSRAHHDTSSLTLFPS*
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mRNA from alignment at scaffold_14:701224..701884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6173 ID=mRNA_6173|Name=jgi.p|Nanoce1779_2|83632|organism=Nannochloropsis oceanica|type=mRNA|length=661bp|location=Sequence derived from alignment at scaffold_14:701224..701884- (Nannochloropsis oceanica)
CGTGACCACGCTCTGCTCATGCCAATGTGATTACCGCAGTTTAGCCATCT
AGCTTGCGACGAGCGTGCGTGCGACAATCCCAGGGCAGGGCAGAGGAGGA
AGAAGCTGCAAGGCTCCGTTTGGCCCCGCTTCAGCTCTTCGCGCCATGGC
CTCCCTCTTTTCCTTTTGCCTTCACCTCTCACGCCGCCTCCACACATGCA
GAGCGAACATAACACAAGACGCCCGTAACGAGGCTGGTCGTCTCATTGTC
AAGGGTTGTGTGGGTCAGTCAAAACGGTCCACTGCGTTTGTCGAACTCTG
CTTTTGGCCCTGCTTGTGGTTGAAGACAGGAAGCGGCGATGATCACAAAT
CCGTGACCGTGAGCCAACACCACCCTAAATGCCCTAGGTCCCAGGCGCCC
CACTGCACGACGGACATTGGTGTGGGCGCACTGTGCTGCGACAGGCTGGT
AGCTGGCTTTGCTGCCAGCCGTGAGGAGGGGAAAACATTTCACATTTCTT
CCTTTTCTCGCGCACACCACGACACGTCCTCGCTAACCCTATTCCCTTCA
TGACATGACAACAGCAGGGACTGCCGCCAACACGAGGAGGGCCAGGCACA
TCATTGTCTACTCTTATTGACGACGACAGAAGGGAGGTGATCGACTCTTA
GCATCTGCACC
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Coding sequence (CDS) from alignment at scaffold_14:701224..701884-

>mRNA_6173 ID=mRNA_6173|Name=jgi.p|Nanoce1779_2|83632|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_14:701224..701884- (Nannochloropsis oceanica)
ATGGCCTCCCTCTTTTCCTTTTGCCTTCACCTCTCACGCCGCCTCCACAC
ATGCAGAGCGAACATAACACAAGACGCCCGTAACGAGGCTGGTCGTCTCA
TTGTCAAGGGTTGTGTGGGTCAGTCAAAACGGTCCACTGCGTTTGTCGAA
CTCTGCTTTTGGCCCTGCTTGTGGTTGAAGACAGGAAGCGGCGATGATCA
CAAATCCGTGACCGTGAGCCAACACCACCCTAAATGCCCTAGGTCCCAGG
CGCCCCACTGCACGACGGACATTGGTGTGGGCGCACTGTGCTGCGACAGG
CTGGTAGCTGGCTTTGCTGCCAGCCGTGAGGAGGGGAAAACATTTCACAT
TTCTTCCTTTTCTCGCGCACACCACGACACGTCCTCGCTAACCCTATTCC
CTTCATGA
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Synonyms
Publications