jgi.p|Nanoce1779_2|650232, mRNA_11401 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|650232
Unique NamemRNA_11401
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length685
Alignment locationscaffold_156:26340..27024 -

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Properties
Property NameValue
TranscriptId650318
TrackFilteredModels2
ProteinId650232
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:26340..27024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650232gene_11401Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11401CDS_11401Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650232mRNA_11401-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11401 ID=mRNA_11401|Name=jgi.p|Nanoce1779_2|650232|organism=Nannochloropsis oceanica|type=mRNA|length=685bp
CCGCTTCTCTTAAGGAATCATGAAGATGAAAATTGAGGAGGCGTACGCAG
CGCTGGAGATTCGCATGGGGGCAAGCGAGGAAGAGGTCAAGAAGGCCTTC
CGCGCGCGCGCACTGAAGACTCATCCTGATCGGAACCCTAACAACCCAAA
TGCCAAGGAAGAATTCCAGAAGATCAATAATGCATATAAAAGAATAATTG
CGGCTCAGGACGAGAGCAGCAGTGATGAAGAAGGAGGAGACGGGAGCAGC
TACATGCCGGAAGAGGAACTCTTTGACTTGTTTGCCACGATGTTTGGAGG
GCAAGGAGGGCCCTTTGGGGTTATGGGTGGTCATTTTGACATGCCCTTCG
GCGTAAATTTTAGTTATAGTGGAGGAGGGGGTGCAGAGTATTCTTTTTCG
GGGTCGAGCCGAGGAGGGAGGTACGTGGTGGAGTCGGACTCAGAGGAGGA
GGACAGCGACGAGTATTATAGCGAGGACGACGAGAGTGAGGATGATGACG
ACGACGATTTGTTTCAGCAGTTGCTCTTTGAGCATATGATGATGGGGAGG
GGCATGGGGGGAATAGGGGCCATGGGGGGACGGAGGGGCGGGGGGAGGGG
AAGTGGTGGGGGAAGGAGTGGAGGCCCGAGTCAACGGGGAGCCGGTGGAA
GAGGAGGAAAGGGAGGAGGGGCTCTCGGTATGTGA
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protein sequence of jgi.p|Nanoce1779_2|650232

>mRNA_11401-protein ID=mRNA_11401-protein|Name=jgi.p|Nanoce1779_2|650232|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MKMKIEEAYAALEIRMGASEEEVKKAFRARALKTHPDRNPNNPNAKEEFQ
KINNAYKRIIAAQDESSSDEEGGDGSSYMPEEELFDLFATMFGGQGGPFG
VMGGHFDMPFGVNFSYSGGGGAEYSFSGSSRGGRYVVESDSEEEDSDEYY
SEDDESEDDDDDDLFQQLLFEHMMMGRGMGGIGAMGGRRGGGRGSGGGRS
GGPSQRGAGGRGGKGGGALGM*
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mRNA from alignment at scaffold_156:26340..27024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11401 ID=mRNA_11401|Name=jgi.p|Nanoce1779_2|650232|organism=Nannochloropsis oceanica|type=mRNA|length=685bp|location=Sequence derived from alignment at scaffold_156:26340..27024- (Nannochloropsis oceanica)
CCGCTTCTCTTAAGGAATCATGAAGATGAAAATTGAGGAGGCGTACGCAG
CGCTGGAGATTCGCATGGGGGCAAGCGAGGAAGAGGTCAAGAAGGCCTTC
CGCGCGCGCGCACTGAAGACTCATCCTGATCGGAACCCTAACAACCCAAA
TGCCAAGGAAGAATTCCAGAAGATCAATAATGCATATAAAAGAATAATTG
CGGCTCAGGACGAGAGCAGCAGTGATGAAGAAGGAGGAGACGGGAGCAGC
TACATGCCGGAAGAGGAACTCTTTGACTTGTTTGCCACGATGTTTGGAGG
GCAAGGAGGGCCCTTTGGGGTTATGGGTGGTCATTTTGACATGCCCTTCG
GCGTAAATTTTAGTTATAGTGGAGGAGGGGGTGCAGAGTATTCTTTTTCG
GGGTCGAGCCGAGGAGGGAGGTACGTGGTGGAGTCGGACTCAGAGGAGGA
GGACAGCGACGAGTATTATAGCGAGGACGACGAGAGTGAGGATGATGACG
ACGACGATTTGTTTCAGCAGTTGCTCTTTGAGCATATGATGATGGGGAGG
GGCATGGGGGGAATAGGGGCCATGGGGGGACGGAGGGGCGGGGGGAGGGG
AAGTGGTGGGGGAAGGAGTGGAGGCCCGAGTCAACGGGGAGCCGGTGGAA
GAGGAGGAAAGGGAGGAGGGGCTCTCGGTATGTGA
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Coding sequence (CDS) from alignment at scaffold_156:26340..27024-

>mRNA_11401 ID=mRNA_11401|Name=jgi.p|Nanoce1779_2|650232|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_156:26340..27024- (Nannochloropsis oceanica)
ATGAAGATGAAAATTGAGGAGGCGTACGCAGCGCTGGAGATTCGCATGGG
GGCAAGCGAGGAAGAGGTCAAGAAGGCCTTCCGCGCGCGCGCACTGAAGA
CTCATCCTGATCGGAACCCTAACAACCCAAATGCCAAGGAAGAATTCCAG
AAGATCAATAATGCATATAAAAGAATAATTGCGGCTCAGGACGAGAGCAG
CAGTGATGAAGAAGGAGGAGACGGGAGCAGCTACATGCCGGAAGAGGAAC
TCTTTGACTTGTTTGCCACGATGTTTGGAGGGCAAGGAGGGCCCTTTGGG
GTTATGGGTGGTCATTTTGACATGCCCTTCGGCGTAAATTTTAGTTATAG
TGGAGGAGGGGGTGCAGAGTATTCTTTTTCGGGGTCGAGCCGAGGAGGGA
GGTACGTGGTGGAGTCGGACTCAGAGGAGGAGGACAGCGACGAGTATTAT
AGCGAGGACGACGAGAGTGAGGATGATGACGACGACGATTTGTTTCAGCA
GTTGCTCTTTGAGCATATGATGATGGGGAGGGGCATGGGGGGAATAGGGG
CCATGGGGGGACGGAGGGGCGGGGGGAGGGGAAGTGGTGGGGGAAGGAGT
GGAGGCCCGAGTCAACGGGGAGCCGGTGGAAGAGGAGGAAAGGGAGGAGG
GGCTCTCGGTATGTGA
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Synonyms
Publications