jgi.p|Nanoce1779_2|595391, mRNA_7041 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595391
Unique NamemRNA_7041
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length985
Alignment locationscaffold_16:138193..139177 -

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Properties
Property NameValue
TranscriptId595477
TrackFilteredModels2
ProteinId595391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:138193..139177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595391gene_7041Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595391mRNA_7041-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7041CDS_7041Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7041 ID=mRNA_7041|Name=jgi.p|Nanoce1779_2|595391|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
GGTGGGGGGGCGAGGGGGAGGAAGGAGGAGGGAATGCCGTCGCTGTATGT
GGCATTCTCTTTGTCCTCGCCCCTTGCAGAGTTGCTGACGACGCTGCTAC
TGCTGTTGCTGGTGGTCGTGGTGCCTTTCTCCTTATCGCTCTTGTCGTTG
TTGGTGGTCGAGGAAGAGAGAGAAGGGAGGAAGTCGGCCGAGGTGGCGTG
CCGTGTATTCCAATGGATGTACGTGCCCTTCTCACCGATCAAGTGCGAAT
CAAGGTAGGCCCAATGTAAGCGAGTATTACCGATGATTAGATAAAGGGCG
GAAGAGGCGATGGTAGATGTCTCAAGTGGGGAAAGTGGTAGCGTGGAGGA
AGCAGCCGGAAGGCTAGTTGGGTCGGCGCCGTCCATCGTTTGTCGCGTTT
GTGGCGGCCCCTTCCTCCGCTGGCCAACCCCCGTCTATATGTCGATAGTT
TGCGTTCATGATGTGTTAGGTTCTGTGGCAGTGGTTTTCATTTGCATAAA
ATGCGCAGCCAGGAGTGCGTTGCGACAACCTCCCCCCTACAGCTTGCTAC
CACGTCTCCCTCTCTCATATATTTCCCAATTCCGCACCTCCTCCTCCCCT
CGTTATACACGATACAGGATGCTGCTGTCACCTTTTTCAGAAAGGCCAGT
GGAGGCGGTGGGGATGATGGCGGCAGGCGTGGTGGTAACCAGCAGCCGAT
CAGACGCAAACGCCTGGATGACCTTGAATTCGTGGCGGCAAAGGAGAGGG
ATCGATTGAACATGGTGATCTACCGATGTGAGAGCTGATGTGGTGATAGC
AATGGCATCAGCTTTTTTTTGTCAAACGTTGTAGCCGTGTTCAGCTAGCA
TCGATGGCAGCAACAGAATCGGGTCTAGTTCGTTCTTTTTGCCGATCCTA
CATCCCTCTAGAACTATCGCATGCAACCTGCGTCCTCTAGGACTTGCATA
AGAGGGGGAGCCTTCAAACAAGAAATTGTTGCATA
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protein sequence of jgi.p|Nanoce1779_2|595391

>mRNA_7041-protein ID=mRNA_7041-protein|Name=jgi.p|Nanoce1779_2|595391|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MVDVSSGESGSVEEAAGRLVGSAPSIVCRVCGGPFLRWPTPVYMSIVCVH
DVLGSVAVVFICIKCAARSALRQPPPYSLLPRLPLSYISQFRTSSSPRYT
RYRMLLSPFSERPVEAVGMMAAGVVVTSSRSDANAWMTLNSWRQRRGID*
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mRNA from alignment at scaffold_16:138193..139177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7041 ID=mRNA_7041|Name=jgi.p|Nanoce1779_2|595391|organism=Nannochloropsis oceanica|type=mRNA|length=985bp|location=Sequence derived from alignment at scaffold_16:138193..139177- (Nannochloropsis oceanica)
GGTGGGGGGGCGAGGGGGAGGAAGGAGGAGGGAATGCCGTCGCTGTATGT
GGCATTCTCTTTGTCCTCGCCCCTTGCAGAGTTGCTGACGACGCTGCTAC
TGCTGTTGCTGGTGGTCGTGGTGCCTTTCTCCTTATCGCTCTTGTCGTTG
TTGGTGGTCGAGGAAGAGAGAGAAGGGAGGAAGTCGGCCGAGGTGGCGTG
CCGTGTATTCCAATGGATGTACGTGCCCTTCTCACCGATCAAGTGCGAAT
CAAGGTAGGCCCAATGTAAGCGAGTATTACCGATGATTAGATAAAGGGCG
GAAGAGGCGATGGTAGATGTCTCAAGTGGGGAAAGTGGTAGCGTGGAGGA
AGCAGCCGGAAGGCTAGTTGGGTCGGCGCCGTCCATCGTTTGTCGCGTTT
GTGGCGGCCCCTTCCTCCGCTGGCCAACCCCCGTCTATATGTCGATAGTT
TGCGTTCATGATGTGTTAGGTTCTGTGGCAGTGGTTTTCATTTGCATAAA
ATGCGCAGCCAGGAGTGCGTTGCGACAACCTCCCCCCTACAGCTTGCTAC
CACGTCTCCCTCTCTCATATATTTCCCAATTCCGCACCTCCTCCTCCCCT
CGTTATACACGATACAGGATGCTGCTGTCACCTTTTTCAGAAAGGCCAGT
GGAGGCGGTGGGGATGATGGCGGCAGGCGTGGTGGTAACCAGCAGCCGAT
CAGACGCAAACGCCTGGATGACCTTGAATTCGTGGCGGCAAAGGAGAGGG
ATCGATTGAACATGGTGATCTACCGATGTGAGAGCTGATGTGGTGATAGC
AATGGCATCAGCTTTTTTTTGTCAAACGTTGTAGCCGTGTTCAGCTAGCA
TCGATGGCAGCAACAGAATCGGGTCTAGTTCGTTCTTTTTGCCGATCCTA
CATCCCTCTAGAACTATCGCATGCAACCTGCGTCCTCTAGGACTTGCATA
AGAGGGGGAGCCTTCAAACAAGAAATTGTTGCATA
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Coding sequence (CDS) from alignment at scaffold_16:138193..139177-

>mRNA_7041 ID=mRNA_7041|Name=jgi.p|Nanoce1779_2|595391|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_16:138193..139177- (Nannochloropsis oceanica)
ATGGTAGATGTCTCAAGTGGGGAAAGTGGTAGCGTGGAGGAAGCAGCCGG
AAGGCTAGTTGGGTCGGCGCCGTCCATCGTTTGTCGCGTTTGTGGCGGCC
CCTTCCTCCGCTGGCCAACCCCCGTCTATATGTCGATAGTTTGCGTTCAT
GATGTGTTAGGTTCTGTGGCAGTGGTTTTCATTTGCATAAAATGCGCAGC
CAGGAGTGCGTTGCGACAACCTCCCCCCTACAGCTTGCTACCACGTCTCC
CTCTCTCATATATTTCCCAATTCCGCACCTCCTCCTCCCCTCGTTATACA
CGATACAGGATGCTGCTGTCACCTTTTTCAGAAAGGCCAGTGGAGGCGGT
GGGGATGATGGCGGCAGGCGTGGTGGTAACCAGCAGCCGATCAGACGCAA
ACGCCTGGATGACCTTGAATTCGTGGCGGCAAAGGAGAGGGATCGATTGA
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Synonyms
Publications