jgi.p|Nanoce1779_2|595843, mRNA_7166 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595843
Unique Name	mRNA_7166
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1834
Alignment location	scaffold_16:433640..435473 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595929
Track	FilteredModels2
ProteinId	595843

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:433640..435473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595843	gene_7166	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595843	mRNA_7166-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7166	CDS_7166	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:433640..435473+
coding sequence from alignment at scaffold_16:433640..435473+

mRNA sequence

>mRNA_7166 ID=mRNA_7166|Name=jgi.p|Nanoce1779_2|595843|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
AAACGAGGGGGAGAGATGGGGAGGGAGGAAGAGAAGGCGGGAGGAGATGT
ATCGCGGGAGGAGGAGGGGAAAGACGAGGAGAAAGAGGAATTGCAGCACG
AGATGAGGAGTTGCAGCAGCAAAGGATTCAGCCGGCCTTCCATGTCTTCT
GCTTACCCCGCGCCCCTGCACCAACCGCGCAATCGCCTCGTCAATGCCCT
CCGACAAGCATGGCCTCTCCTCCGCGCCTTAGAAGGGAGGAGAGGCAACC
CTCATACCCACACACCTTCAACCCCTGCTTCCAATCAAGAGAGACGCTCG
AAACTCTTGGCCCGGCAGGGGAAAGAGGGAGAGTTGAAGGAAGGGACGGA
GGACGGGTTGGTCATGCACTTGAAGAATGCAGCGAGGCAGGCGGAGGAAT
CAGCGACGGCGGTGCTGCAGCCACGCTTACCCAGGCGAAGGGTACAGCAG
CAGCAGATTTGTATAGAAGAGGAGAGGGATGGCAGTGGAGGTAGGTGTAA
TTGTGGCAGCAGCAGTGCCGGGGCACCTCAGACGCCGCGGACGCGTATAA
AGGACAGTGACAAGGAGGAGGGGGGTGGGAGGGAGGGAGGGGACAAGGAA
GGACCGATGACAACGACGAGAACGACGAAAGGAAAGAGATTTCCCACCTT
GGTTGTTATTACGGGGGGGGGGGAGGCAGGCAGGGGGAAGGAGAGGCCGA
CGGCGTATGGGCGCTTGAAGGATGAAGGGGGGAAGGACGATGAGGTGGCG
CATGAGTGGCCGTTCCTCCCTTTCGAGCGGACGTGGGCACAGTCGTCGAG
GGCCTGAAGGAGGGAGGAGAGAGGGAAGGAGGGCTGGCGTGTGCAGTCTT
TCCTGACTTGAATATTCTTCTTGGTTTTCTCGTGTTCCTTTTTAGGGGGG
GAGAAGGAAAATGAGATGTAATAATTAAAATTACATTATTAGTAATAGTA
TGGTAAGAGAAGAGCCGTCAATCAACAGTCGCCACCACCACCAGCAGCAA
TAGCAGTGGCAGCAGTGGCACTGTCACTTATGCCAGCACGCCGATAACGG
TCTTATTTTCAATTTTTGCGAATCAGCAACACCCGCAATGACAGCAGTAG
TAATCAGCGGTAGCATCCAGAGAATAAGAATAAAAGGCGACGACAAGAAA
TGGAAGAGATAGAAGAGATAGAAGAAGAACAAGAAGAACAAGAAGAAGAA
GGAAGGAGAAGGAGACGAGGGGGAAAAGAAGGAGGAGTAGGATCTGGAGG
TGAAATTTGCTGCTACGAGAGAGAAAGTGACGGAGACGGAGAAAGGGAAG
AATGAGGAGGGGAAAGGGCACGTCGCAAGCGCTCTCTTTCCTCTTACTTT
TTCCTCGCTCAACAGTACTTGTCTTCCTACTGGACTATACCCAAGACAAT
CCTGTCGTCAACTCTGGCTTCACCCACAACACAGGAGCGAGTGAAAGAGG
AAAAGCTTGAAAAGAGAGTTAAACAAACTACAGGTTACACGCACGTCACA
GCCCATGTCATCATCATTCTTTTTGGGGATATTGGGCATCCATTTGTCCT
GCATATATTATAAATATTTATACAGAATCAACCGGATCGCTGTAGGATAG
AGATGGGGGGAGGGGCAGGCCTTGTGTCGGGTTGCGAGTTCATGTCCACG
GGCCCTCACAATGCTTTCAATAGCCTTCATTCACTCACTAGCTGCTGCAG
CGGTCAGAAGATAAGAGGAAAGGGAGAGAGGAGAGGAGGAATAGCTGCAC
AAACTAATGGTATAGGGCGATAGAGAGGAAGGGCGTTAGGGAGAGAGAAG
GGAGACTGTGGAGAAGAAACTCCAAACTATGCTA

protein sequence of jgi.p|Nanoce1779_2|595843

>mRNA_7166-protein ID=mRNA_7166-protein|Name=jgi.p|Nanoce1779_2|595843|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MGREEEKAGGDVSREEEGKDEEKEELQHEMRSCSSKGFSRPSMSSAYPAP
LHQPRNRLVNALRQAWPLLRALEGRRGNPHTHTPSTPASNQERRSKLLAR
QGKEGELKEGTEDGLVMHLKNAARQAEESATAVLQPRLPRRRVQQQQICI
EEERDGSGGRCNCGSSSAGAPQTPRTRIKDSDKEEGGGREGGDKEGPMTT
TRTTKGKRFPTLVVITGGGEAGRGKERPTAYGRLKDEGGKDDEVAHEWPF
LPFERTWAQSSRA*

mRNA from alignment at scaffold_16:433640..435473+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7166 ID=mRNA_7166|Name=jgi.p|Nanoce1779_2|595843|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp|location=Sequence derived from alignment at scaffold_16:433640..435473+ (Nannochloropsis oceanica)
AAACGAGGGGGAGAGATGGGGAGGGAGGAAGAGAAGGCGGGAGGAGATGT
ATCGCGGGAGGAGGAGGGGAAAGACGAGGAGAAAGAGGAATTGCAGCACG
AGATGAGGAGTTGCAGCAGCAAAGGATTCAGCCGGCCTTCCATGTCTTCT
GCTTACCCCGCGCCCCTGCACCAACCGCGCAATCGCCTCGTCAATGCCCT
CCGACAAGCATGGCCTCTCCTCCGCGCCTTAGAAGGGAGGAGAGGCAACC
CTCATACCCACACACCTTCAACCCCTGCTTCCAATCAAGAGAGACGCTCG
AAACTCTTGGCCCGGCAGGGGAAAGAGGGAGAGTTGAAGGAAGGGACGGA
GGACGGGTTGGTCATGCACTTGAAGAATGCAGCGAGGCAGGCGGAGGAAT
CAGCGACGGCGGTGCTGCAGCCACGCTTACCCAGGCGAAGGGTACAGCAG
CAGCAGATTTGTATAGAAGAGGAGAGGGATGGCAGTGGAGGTAGGTGTAA
TTGTGGCAGCAGCAGTGCCGGGGCACCTCAGACGCCGCGGACGCGTATAA
AGGACAGTGACAAGGAGGAGGGGGGTGGGAGGGAGGGAGGGGACAAGGAA
GGACCGATGACAACGACGAGAACGACGAAAGGAAAGAGATTTCCCACCTT
GGTTGTTATTACGGGGGGGGGGGAGGCAGGCAGGGGGAAGGAGAGGCCGA
CGGCGTATGGGCGCTTGAAGGATGAAGGGGGGAAGGACGATGAGGTGGCG
CATGAGTGGCCGTTCCTCCCTTTCGAGCGGACGTGGGCACAGTCGTCGAG
GGCCTGAAGGAGGGAGGAGAGAGGGAAGGAGGGCTGGCGTGTGCAGTCTT
TCCTGACTTGAATATTCTTCTTGGTTTTCTCGTGTTCCTTTTTAGGGGGG
GAGAAGGAAAATGAGATGTAATAATTAAAATTACATTATTAGTAATAGTA
TGGTAAGAGAAGAGCCGTCAATCAACAGTCGCCACCACCACCAGCAGCAA
TAGCAGTGGCAGCAGTGGCACTGTCACTTATGCCAGCACGCCGATAACGG
TCTTATTTTCAATTTTTGCGAATCAGCAACACCCGCAATGACAGCAGTAG
TAATCAGCGGTAGCATCCAGAGAATAAGAATAAAAGGCGACGACAAGAAA
TGGAAGAGATAGAAGAGATAGAAGAAGAACAAGAAGAACAAGAAGAAGAA
GGAAGGAGAAGGAGACGAGGGGGAAAAGAAGGAGGAGTAGGATCTGGAGG
TGAAATTTGCTGCTACGAGAGAGAAAGTGACGGAGACGGAGAAAGGGAAG
AATGAGGAGGGGAAAGGGCACGTCGCAAGCGCTCTCTTTCCTCTTACTTT
TTCCTCGCTCAACAGTACTTGTCTTCCTACTGGACTATACCCAAGACAAT
CCTGTCGTCAACTCTGGCTTCACCCACAACACAGGAGCGAGTGAAAGAGG
AAAAGCTTGAAAAGAGAGTTAAACAAACTACAGGTTACACGCACGTCACA
GCCCATGTCATCATCATTCTTTTTGGGGATATTGGGCATCCATTTGTCCT
GCATATATTATAAATATTTATACAGAATCAACCGGATCGCTGTAGGATAG
AGATGGGGGGAGGGGCAGGCCTTGTGTCGGGTTGCGAGTTCATGTCCACG
GGCCCTCACAATGCTTTCAATAGCCTTCATTCACTCACTAGCTGCTGCAG
CGGTCAGAAGATAAGAGGAAAGGGAGAGAGGAGAGGAGGAATAGCTGCAC
AAACTAATGGTATAGGGCGATAGAGAGGAAGGGCGTTAGGGAGAGAGAAG
GGAGACTGTGGAGAAGAAACTCCAAACTATGCTA

Coding sequence (CDS) from alignment at scaffold_16:433640..435473+

>mRNA_7166 ID=mRNA_7166|Name=jgi.p|Nanoce1779_2|595843|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_16:433640..435473+ (Nannochloropsis oceanica)
ATGGGGAGGGAGGAAGAGAAGGCGGGAGGAGATGTATCGCGGGAGGAGGA
GGGGAAAGACGAGGAGAAAGAGGAATTGCAGCACGAGATGAGGAGTTGCA
GCAGCAAAGGATTCAGCCGGCCTTCCATGTCTTCTGCTTACCCCGCGCCC
CTGCACCAACCGCGCAATCGCCTCGTCAATGCCCTCCGACAAGCATGGCC
TCTCCTCCGCGCCTTAGAAGGGAGGAGAGGCAACCCTCATACCCACACAC
CTTCAACCCCTGCTTCCAATCAAGAGAGACGCTCGAAACTCTTGGCCCGG
CAGGGGAAAGAGGGAGAGTTGAAGGAAGGGACGGAGGACGGGTTGGTCAT
GCACTTGAAGAATGCAGCGAGGCAGGCGGAGGAATCAGCGACGGCGGTGC
TGCAGCCACGCTTACCCAGGCGAAGGGTACAGCAGCAGCAGATTTGTATA
GAAGAGGAGAGGGATGGCAGTGGAGGTAGGTGTAATTGTGGCAGCAGCAG
TGCCGGGGCACCTCAGACGCCGCGGACGCGTATAAAGGACAGTGACAAGG
AGGAGGGGGGTGGGAGGGAGGGAGGGGACAAGGAAGGACCGATGACAACG
ACGAGAACGACGAAAGGAAAGAGATTTCCCACCTTGGTTGTTATTACGGG
GGGGGGGGAGGCAGGCAGGGGGAAGGAGAGGCCGACGGCGTATGGGCGCT
TGAAGGATGAAGGGGGGAAGGACGATGAGGTGGCGCATGAGTGGCCGTTC
CTCCCTTTCGAGCGGACGTGGGCACAGTCGTCGAGGGCCTGA

Synonyms

Publications