jgi.p|Nanoce1779_2|113568, mRNA_6806 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|113568
Unique NamemRNA_6806
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1504
Alignment locationscaffold_17:143447..145314 -

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Properties
Property NameValue
TranscriptId113654
TrackFilteredModels2
ProteinId113568
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:143447..145314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113568gene_6806Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113568mRNA_6806-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6806CDS_6806Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6806 ID=mRNA_6806|Name=jgi.p|Nanoce1779_2|113568|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp
TACCTCCACACACCCCCTGTCATAAACAAGACCATAGGAGGAGTTAAGCA
GCTGCTGCAGCAGCTCCAGCAGGAGCCACAGCACCAGCAGGATCCACAGC
AGGAGCAGGAAGAGCAGGAGGAGCAGAAGCAGAAGCAGGAGCAGGAGCAG
GGACAGCAACAGCAAGAGGAGGAGGATTAAGAGGACGAGCCACCTTTAAT
ACGCAGCCAGCGAGTTGACGTCCCCTATCCACCATCCTGCTACGTTGGTA
CAAGTTGCAATGTCTAACACCATCTGTCCATCTACCGTCCATCTCCTGCT
CCTCTTCTTTCTCGGCGGCGTGTCCTCCTTTATGCTCGGCCCGTCACCAT
GGAGCAAAAGTTATCAGAGGGCATGGCAAATGCCGACAACGCACACACCA
CTACGGCACCTGTCCTTGACGACATCATCCTTAAGCCCCTTTTCCAGTTC
TAGCAAAAGCATTGAGATGAGTACGAGACCACGCAGCGTCCGAGGCATCC
ACGCCGATGTCTTTTTAAGCAACGCGACCACTGCGCCCTCGTCCTCTCCC
ACCTCTCTCTGTGCCTCCCCCCCGTCGCCATCAACAAAATTGTCCGCACC
CGACGGTCCCCAAGACGTCGCCGCCCGGGTCCATCGTATGGAAGGAACCA
TTCTAAATCTGGAAAAGCAACTCAAGCGCTTAGAAAGCGTGATTGCTACC
AAAAGCAGCGGCAGAAATCGAGCCAAAATGCTCGTTATAAACTATGACGT
TGGCCCCGACGCGAAGGTGGATTCTGTCGACATCGCCGTGGGCGCTGCAT
GGGTATTCGGTTTCCTGGGATTAATGATCGGTCGCTCTATAGCGAGTAAC
TTGTGGTTCGTGGGATTTCTGACAGGGGCGATGTGGGCGGGGTTCCTGGC
TAGGGAGGAAGAGGGGGGGGCGATAAGTGATGTGATCCGCGCAGTGGGAT
GGCAAGTTGCAGTCAAGACTAGACAGTTGGTGTTCATGTACCGGACGGGC
AGGTTGAGCTATATTTATGCGAAGAAATGGGAGGCATTCGATAGAAAGTA
TGCGGTGCTCAGGAAGATGGAAGCGTTGCAGAAGTTCTCATTGAAAAAAT
GGATGGAGGTGGAGGAGGCGGAGAAGAAATATGAAGTACGGTATCGATTG
ACCTCATTTCTGAAGGCCGGGTATAATGGAGCGGTGGATGGGACGGCAAA
GCTCTTTAACGCCAAGGATAGGAAGGATCTGGTGAAGAAATTGCCGAGAC
CATTCCGCCTCCTGTTCATGTCCAAGGCGCAACGCAAGGCCGAAGACCGG
CGCCGCGTGACTGTGCGGCGTTTCGTGGGACTGCAGAACGGCAGACCCGT
CGTGGAAGTAGAGGATGGTTGACAGACATGTACACACAAGTAGATAGACG
TGGCGAATCGATTCTAAAAATAGACAAGCGAAGAAACTACGGTTTGAATT
GAAAAGAAGCATCACAATAGCATTTATTGAGGAGCCAAAATCAACAAAAA
GGAA
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protein sequence of jgi.p|Nanoce1779_2|113568

>mRNA_6806-protein ID=mRNA_6806-protein|Name=jgi.p|Nanoce1779_2|113568|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MSNTICPSTVHLLLLFFLGGVSSFMLGPSPWSKSYQRAWQMPTTHTPLRH
LSLTTSSLSPFSSSSKSIEMSTRPRSVRGIHADVFLSNATTAPSSSPTSL
CASPPSPSTKLSAPDGPQDVAARVHRMEGTILNLEKQLKRLESVIATKSS
GRNRAKMLVINYDVGPDAKVDSVDIAVGAAWVFGFLGLMIGRSIASNLWF
VGFLTGAMWAGFLAREEEGGAISDVIRAVGWQVAVKTRQLVFMYRTGRLS
YIYAKKWEAFDRKYAVLRKMEALQKFSLKKWMEVEEAEKKYEVRYRLTSF
LKAGYNGAVDGTAKLFNAKDRKDLVKKLPRPFRLLFMSKAQRKAEDRRRV
TVRRFVGLQNGRPVVEVEDG*
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mRNA from alignment at scaffold_17:143447..145314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6806 ID=mRNA_6806|Name=jgi.p|Nanoce1779_2|113568|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp|location=Sequence derived from alignment at scaffold_17:143447..145314- (Nannochloropsis oceanica)
TACCTCCACACACCCCCTGTCATAAACAAGACCATAGGAGGAGTTAAGCA
GCTGCTGCAGCAGCTCCAGCAGGAGCCACAGCACCAGCAGGATCCACAGC
AGGAGCAGGAAGAGCAGGAGGAGCAGAAGCAGAAGCAGGAGCAGGAGCAG
GGACAGCAACAGCAAGAGGAGGAGGATTAAGAGGACGAGCCACCTTTAAT
ACGCAGCCAGCGAGTTGACGTCCCCTATCCACCATCCTGCTACGTTGGTA
CAAGTTGCAATGTCTAACACCATCTGTCCATCTACCGTCCATCTCCTGCT
CCTCTTCTTTCTCGGCGGCGTGTCCTCCTTTATGCTCGGCCCGTCACCAT
GGAGCAAAAGTTATCAGAGGGCATGGCAAATGCCGACAACGCACACACCA
CTACGGCACCTGTCCTTGACGACATCATCCTTAAGCCCCTTTTCCAGTTC
TAGCAAAAGCATTGAGATGAGTACGAGACCACGCAGCGTCCGAGGCATCC
ACGCCGATGTCTTTTTAAGCAACGCGACCACTGCGCCCTCGTCCTCTCCC
ACCTCTCTCTGTGCCTCCCCCCCGTCGCCATCAACAAAATTGTCCGCACC
CGACGGTCCCCAAGACGTCGCCGCCCGGGTCCATCGTATGGAAGGAACCA
TTCTAAATCTGGAAAAGCAACTCAAGCGCTTAGAAAGCGTGATTGCTACC
AAAAGCAGCGGCAGAAATCGAGCCAAAATGCTCGTTATAAACTATGACGT
TGGCCCCGACGCGAAGGTGGATTCTGTCGACATCGCCGTGGGCGCTGCAT
GGGTATTCGGTTTCCTGGGATTAATGATCGGTCGCTCTATAGCGAGTAAC
TTGTGGTTCGTGGGATTTCTGACAGGGGCGATGTGGGCGGGGTTCCTGGC
TAGGGAGGAAGAGGGGGGGGCGATAAGTGATGTGATCCGCGCAGTGGGAT
GGCAAGTTGCAGTCAAGACTAGACAGTTGGTGTTCATGTACCGGACGGGC
AGGTTGAGCTATATTTATGCGAAGAAATGGGAGGCATTCGATAGAAAGTA
TGCGGTGCTCAGGAAGATGGAAGCGTTGCAGAAGTTCTCATTGAAAAAAT
GGATGGAGGTGGAGGAGGCGGAGAAGAAATATGAAGTACGGTATCGATTG
ACCTCATTTCTGAAGGCCGGGTATAATGGAGCGGTGGATGGGACGGCAAA
GCTCTTTAACGCCAAGGATAGGAAGGATCTGGTGAAGAAATTGCCGGTAG
GTCTATCTGGCGAGGGGAAGGGAGTGATTGAAAAAGAGGGAGGGGAAAGA
GGGATGGATCTGTATTTACGTAGATTTTGAACATACGCAGTCTGTTGCGG
GCAGTGGAACGAGTTTGTTTGTATCGCGTCTTTCACAAGCGTCCCTGGGG
GTGTAGTCGCGCCTGCATCTATGTATGTTGTCCCTGACATGTCATACTCT
CCCTCATCCTCCTTTCCTTCTCCACCACGCACACCTCCCACCCTCCTTTC
CTCTCTTTACGTACACAATCCCCCTCATTACACACCCTTCTCTCACACAC
ACTTACACACACACACACACACGGCCCCCCCCCCACACACACGCACATTC
TCCTTTTCAGAGACCATTCCGCCTCCTGTTCATGTCCAAGGCGCAACGCA
AGGCCGAAGACCGGCGCCGCGTGACTGTGCGGCGTTTCGTGGGACTGCAG
AACGGCAGACCCGTCGTGGAAGTAGAGGATGGTTGACAGACATGTACACA
CAAGTAGATAGACGTGGCGAATCGATTCTAAAAATAGACAAGCGAAGAAA
CTACGGTTTGAATTGAAAAGAAGCATCACAATAGCATTTATTGAGGAGCC
AAAATCAACAAAAAGGAA
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Coding sequence (CDS) from alignment at scaffold_17:143447..145314-

>mRNA_6806 ID=mRNA_6806|Name=jgi.p|Nanoce1779_2|113568|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at scaffold_17:143447..145314- (Nannochloropsis oceanica)
AGACCATTCCGCCTCCTGTTCATGTCCAAGGCGCAACGCAAGGCCGAAGA
CCGGCGCCGCGTGACTGTGCGGCGTTTCGTGGGACTGCAGAACGGCAGAC
CCGTCGTGGAAGTAGAGGATGGTTGAATGTCTAACACCATCTGTCCATCT
ACCGTCCATCTCCTGCTCCTCTTCTTTCTCGGCGGCGTGTCCTCCTTTAT
GCTCGGCCCGTCACCATGGAGCAAAAGTTATCAGAGGGCATGGCAAATGC
CGACAACGCACACACCACTACGGCACCTGTCCTTGACGACATCATCCTTA
AGCCCCTTTTCCAGTTCTAGCAAAAGCATTGAGATGAGTACGAGACCACG
CAGCGTCCGAGGCATCCACGCCGATGTCTTTTTAAGCAACGCGACCACTG
CGCCCTCGTCCTCTCCCACCTCTCTCTGTGCCTCCCCCCCGTCGCCATCA
ACAAAATTGTCCGCACCCGACGGTCCCCAAGACGTCGCCGCCCGGGTCCA
TCGTATGGAAGGAACCATTCTAAATCTGGAAAAGCAACTCAAGCGCTTAG
AAAGCGTGATTGCTACCAAAAGCAGCGGCAGAAATCGAGCCAAAATGCTC
GTTATAAACTATGACGTTGGCCCCGACGCGAAGGTGGATTCTGTCGACAT
CGCCGTGGGCGCTGCATGGGTATTCGGTTTCCTGGGATTAATGATCGGTC
GCTCTATAGCGAGTAACTTGTGGTTCGTGGGATTTCTGACAGGGGCGATG
TGGGCGGGGTTCCTGGCTAGGGAGGAAGAGGGGGGGGCGATAAGTGATGT
GATCCGCGCAGTGGGATGGCAAGTTGCAGTCAAGACTAGACAGTTGGTGT
TCATGTACCGGACGGGCAGGTTGAGCTATATTTATGCGAAGAAATGGGAG
GCATTCGATAGAAAGTATGCGGTGCTCAGGAAGATGGAAGCGTTGCAGAA
GTTCTCATTGAAAAAATGGATGGAGGTGGAGGAGGCGGAGAAGAAATATG
AAGTACGGTATCGATTGACCTCATTTCTGAAGGCCGGGTATAATGGAGCG
GTGGATGGGACGGCAAAGCTCTTTAACGCCAAGGATAGGAAGGATCTGGT
GAAGAAATTGCCGAGACCATTCCGCCTCCTGTTCATGTCCAAGGCGCAAC
GCAAGGCCGAAGACCGGCGCCGCGTGACTGTGCGGCGTTTCGTGGGACTG
CAGAACGGCAGACCCGTCGTGGAAGTAGAGGATGGTTGAATGTCTAACAC
CATCTGTCCATCTACCGTCCATCTCCTGCTCCTCTTCTTTCTCGGCGGCG
TGTCCTCCTTTATGCTCGGCCCGTCACCATGGAGCAAAAGTTATCAGAGG
GCATGGCAAATGCCGACAACGCACACACCACTACGGCACCTGTCCTTGAC
GACATCATCCTTAAGCCCCTTTTCCAGTTCTAGCAAAAGCATTGAGATGA
GTACGAGACCACGCAGCGTCCGAGGCATCCACGCCGATGTCTTTTTAAGC
AACGCGACCACTGCGCCCTCGTCCTCTCCCACCTCTCTCTGTGCCTCCCC
CCCGTCGCCATCAACAAAATTGTCCGCACCCGACGGTCCCCAAGACGTCG
CCGCCCGGGTCCATCGTATGGAAGGAACCATTCTAAATCTGGAAAAGCAA
CTCAAGCGCTTAGAAAGCGTGATTGCTACCAAAAGCAGCGGCAGAAATCG
AGCCAAAATGCTCGTTATAAACTATGACGTTGGCCCCGACGCGAAGGTGG
ATTCTGTCGACATCGCCGTGGGCGCTGCATGGGTATTCGGTTTCCTGGGA
TTAATGATCGGTCGCTCTATAGCGAGTAACTTGTGGTTCGTGGGATTTCT
GACAGGGGCGATGTGGGCGGGGTTCCTGGCTAGGGAGGAAGAGGGGGGGG
CGATAAGTGATGTGATCCGCGCAGTGGGATGGCAAGTTGCAGTCAAGACT
AGACAGTTGGTGTTCATGTACCGGACGGGCAGGTTGAGCTATATTTATGC
GAAGAAATGGGAGGCATTCGATAGAAAGTATGCGGTGCTCAGGAAGATGG
AAGCGTTGCAGAAGTTCTCATTGAAAAAATGGATGGAGGTGGAGGAGGCG
GAGAAGAAATATGAAGTACGGTATCGATTGACCTCATTTCTGAAGGCCGG
GTATAATGGAGCGGTGGATGGGACGGCAAAGCTCTTTAACGCCAAGGATA
GGAAGGATCTGGTGAAGAAATTGCCG
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Synonyms
Publications