jgi.p|Nanoce1779_2|574286, mRNA_831 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574286
Unique Name	mRNA_831
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	931
Alignment location	scaffold_2:528987..530764 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574372
Track	FilteredModels2
ProteinId	574286

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:528987..530764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574286	gene_831	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574286	mRNA_831-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_831	CDS_831	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:528987..530764+
coding sequence from alignment at scaffold_2:528987..530764+

mRNA sequence

>mRNA_831 ID=mRNA_831|Name=jgi.p|Nanoce1779_2|574286|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
ACAGGGCACAAGCAACACAAATATCCAAAGCACCCCAGCAGTCATGGCTA
CACGTCTTCAGTTCGAGAACAGCAATGAGATTGGCGTATTTTCCAGACTT
ACCAATAGCTACTGCTTGACAGCTCTGGGCGGCAGCGAGAATTTCTACAG
TGTATTTGAACAGGAGCTGGCAGATCATATCCCCGTCATTCATGCCTCGG
TGGCTGGTTGCCGGTTCATTGGTCGGGTGACGGTCGGAAACAAGAAGGGC
TTGCTCGTGCCGAGTACGACCACAGACCAGGAGCTGCAGCACATTCGCAA
TTCGTTGCCGGATGCTGTGGTGGTGCAGAGGGTGGAGGACCGGCTATCGG
CCTTGGGGAACTGCATTGTGGCCAATGATCACGTGGCGCTCGTGCATACC
GACTTGGACCGGGAAACGGAAGAAATTCTTGCCGACGTCCTAGGCGTAGA
AGTCTTCCGTCAGACAATTGCGGGCAATGCGCTGGTAGGCAGCTATTCGA
TCATTACGAATCAAGGGGGAATGGTGCATCCGAAGACGACGGTGGAGGAC
TTAGAGGAATTGTCTTCATTGCTGCAGATCCCCTTAGTGGCGGGGACGAT
TAATCGGGGGAGCGACGTGTTGGGAGCGGGGTTGGTGGCGAATGATTGGG
CGGCATTTTGTGGATTGGACACCACGTCGACTGAGATCAGTGTTGTGGAG
TCCATATTCAAGCTGCAGGATGCGGTGCCCATGAACGTGGTCAAGGGGCT
GAGGACGAGTTTGATCGACTCCATGGCGTAGACGTGTATGTTTGCATATG
AAGAGGAAAATAGAAGCCAGAGGCAAACTCGCGAGACAAATTGATTGTCA
GGGGACTGTAAAAGCACCGCCAAAAGAAGAAAGAACCAGCGCACATCCCT
CTCTTAGACCAAGAAGCTGACTCATGTCCTC

protein sequence of jgi.p|Nanoce1779_2|574286

>mRNA_831-protein ID=mRNA_831-protein|Name=jgi.p|Nanoce1779_2|574286|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSVFEQELADHIPVIH
ASVAGCRFIGRVTVGNKKGLLVPSTTTDQELQHIRNSLPDAVVVQRVEDR
LSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGS
YSIITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTINRGSDVLGAGLVAN
DWAAFCGLDTTSTEISVVESIFKLQDAVPMNVVKGLRTSLIDSMA*

mRNA from alignment at scaffold_2:528987..530764+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_831 ID=mRNA_831|Name=jgi.p|Nanoce1779_2|574286|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp|location=Sequence derived from alignment at scaffold_2:528987..530764+ (Nannochloropsis oceanica)
ACAGGGCACAAGCAACACAAATATCCAAAGCACCCCAGCAGTCATGGCTA
CACGTCTTCAGTTCGAGAACAGCAATGAGATTGGCGTATTTTCCAGACTT
ACCAATAGGTAGGATTGGGGAAAGGCAGCGACGTTGTAAGGGGTGGGGTG
GGGATGCTAATGGCCCAGGTGGGCGTGATGCCAGTCCTGCGTGTGTGCTT
ATAGAATACAATGCTACGAGGCATTTGAGCGGATACTTGCTTGCTCTTAA
GACATAGAGGCTGTAGAATGTCTCATCTCCGTGCTATGGCTGTGTGTTGC
GTGGTGTCGAGCGTACGCATCCTTGCACCGTGTGCAGGGCATGGTTGGGG
TCGTACGTCGCATCCATGCAAGCAAGCGTGCATTGTATGCTGAACTGATA
TGGCACAAGAGCCCATTATACGTGTGTTTATGCGTAAATACATCAAGGGC
AATGGTATGATGTTACTGATGACGCCCACACACATCTAGTCACCACCCAT
GCCTCACACCGCATTCCTCCCTGTCCCTTCAAAAAGCTACTGCTTGACAG
CTCTGGGCGGCAGCGAGAATTTCTACAGTGTATTTGAACAGGAGCTGGCA
GATCATATCCCCGTCATTCATGCCTCGGTGGCTGGTTGCCGGTTCATTGG
TCGGGTGACGGTCGGAAACAAGAAGGGCTTGCTCGTGCCGAGTACGACCA
CAGACCAGGAGCTGCAGCACATTCGCAATTCGTTGCCGGATGCGTGAGTA
TTTGAGGGTGGGAAAGAGGGAGAGGAGAGGAAACGTGGACAGGTTGGGCC
ATAAAGGATTGTTGAATGCACCAGCTCAATGGAGGTGGCGATGCTTATTC
TTCCTTCTTTTTTCCTCCCTCAAAATACAGTGTGGTGGTGCAGAGGGTGG
AGGACCGGCTATCGGCCTTGGGGAACTGCATTGTGGCCAATGATCACGTG
GCGCTCGTGCATACCGACTTGGACCGGGTAAGAAATCAACCTTTGTTTTT
CCTTCCGCTTTTGTTACGTCCAGTTGTTACCGAAGTCTTCCCAATTCGCC
ACCCACTCATTCAATCCCCTCGCATTTTCCGCGGTCCCAGGAAACGGAAG
AAATTCTTGCCGACGTCCTAGGCGTAGAAGTCTTCCGTCAGACAATTGCG
GGCAATGCGCTGGTAGGCAGCTATTCGATCATTACGAATCAAGGGGGAAT
GGTGCATCCGAAGACGACGGTGGAGGACTTAGAGGAATTGTCTTCATTGC
TGCAGATCCCCTTAGTGGCGGGGACGATTAATCGGGGGAGCGACGTGTTG
GGAGCGGGGTTGGTGGCGAATGATTGGGCGGCATTTTGTGGATTGGACAC
CACGTCGACTGAGGTGCGTTTCTTTGGTTTGGTCTGGGATTTGGGGGGGT
GAGGAAGAGGTGGAGGGATGAGGGAAAGGGCGGGGAGGTCGGACTACGTG
TCGCGTATGTTGTTGAGAGATTATGACCCATTACATTCCACAAATACACA
CTCACGCACACATGCTTATTTCTGAATTATAGATCAGTGTTGTGGAGTCC
ATATTCAAGCTGCAGGATGCGGTGCCCATGAACGTGGTCAAGGGGCTGAG
GACGAGTTTGATCGACTCCATGGCGTAGACGTGTATGTTTGCATATGAAG
AGGAAAATAGAAGCCAGAGGCAAACTCGCGAGACAAATTGATTGTCAGGG
GACTGTAAAAGCACCGCCAAAAGAAGAAAGAACCAGCGCACATCCCTCTC
TTAGACCAAGAAGCTGACTCATGTCCTC

Coding sequence (CDS) from alignment at scaffold_2:528987..530764+

>mRNA_831 ID=mRNA_831|Name=jgi.p|Nanoce1779_2|574286|organism=Nannochloropsis oceanica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_2:528987..530764+ (Nannochloropsis oceanica)
ATGGCTACACGTCTTCAGTTCGAGAACAGCAATGAGATTGGCGTATTTTC
CAGACTTACCAATAGCTACTGCTTGACAGCTCTGGGCGGCAGCGAGAATT
TCTACAGTGTATTTGAACAGGAGCTGGCAGATCATATCCCCGTCATTCAT
GCCTCGGTGGCTGGTTGCCGGTTCATTGGTCGGGTGACGGTCGGAAACAA
GAAGGGCTTGCTCGTGCCGAGTACGACCACAGACCAGGAGCTGCAGCACA
TTCGCAATTCGTTGCCGGATGCTGTGGTGGTGCAGAGGGTGGAGGACCGG
CTATCGGCCTTGGGGAACTGCATTGTGGCCAATGATCACGTGGCGCTCGT
GCATACCGACTTGGACCGGGAAACGGAAGAAATTCTTGCCGACGTCCTAG
GCGTAGAAGTCTTCCGTCAGACAATTGCGGGCAATGCGCTGGTAGGCAGC
TATTCGATCATTACGAATCAAGGGGGAATGGTGCATCCGAAGACGACGGT
GGAGGACTTAGAGGAATTGTCTTCATTGCTGCAGATCCCCTTAGTGGCGG
GGACGATTAATCGGGGGAGCGACGTGTTGGGAGCGGGGTTGGTGGCGAAT
GATTGGGCGGCATTTTGTGGATTGGACACCACGTCGACTGAGATCAGTGT
TGTGGAGTCCATATTCAAGCTGCAGGATGCGGTGCCCATGAACGTGGTCA
AGGGGCTGAGGACGAGTTTGATCGACTCCATGGCGTAGATGGCTACACGT
CTTCAGTTCGAGAACAGCAATGAGATTGGCGTATTTTCCAGACTTACCAA
TAGCTACTGCTTGACAGCTCTGGGCGGCAGCGAGAATTTCTACAGTGTAT
TTGAACAGGAGCTGGCAGATCATATCCCCGTCATTCATGCCTCGGTGGCT
GGTTGCCGGTTCATTGGTCGGGTGACGGTCGGAAACAAGAAGGGCTTGCT
CGTGCCGAGTACGACCACAGACCAGGAGCTGCAGCACATTCGCAATTCGT
TGCCGGATGCTGTGGTGGTGCAGAGGGTGGAGGACCGGCTATCGGCCTTG
GGGAACTGCATTGTGGCCAATGATCACGTGGCGCTCGTGCATACCGACTT
GGACCGGGAAACGGAAGAAATTCTTGCCGACGTCCTAGGCGTAGAAGTCT
TCCGTCAGACAATTGCGGGCAATGCGCTGGTAGGCAGCTATTCGATCATT
ACGAATCAAGGGGGAATGGTGCATCCGAAGACGACGGTGGAGGACTTAGA
GGAATTGTCTTCATTGCTGCAGATCCCCTTAGTGGCGGGGACGATTAATC
GGGGGAGCGACGTGTTGGGAGCGGGGTTGGTGGCGAATGATTGGGCGGCA
TTTTGTGGATTGGACACCACGTCGACTGAGATCAGTGTTGTGGAGTCCAT
ATTCAAGCTGCAGGATGCGGTGCCCATGAACGTGGTCAAGGGGCTGAGGA
CGAGTTTGATCGACTCCATGGCGTAGATGGCTACACGTCTTCAGTTCGAG
AACAGCAATGAGATTGGCGTATTTTCCAGACTTACCAATAGCTACTGCTT
GACAGCTCTGGGCGGCAGCGAGAATTTCTACAGTGTATTTGAACAGGAGC
TGGCAGATCATATCCCCGTCATTCATGCCTCGGTGGCTGGTTGCCGGTTC
ATTGGTCGGGTGACGGTCGGAAACAAGAAGGGCTTGCTCGTGCCGAGTAC
GACCACAGACCAGGAGCTGCAGCACATTCGCAATTCGTTGCCGGATGCTG
TGGTGGTGCAGAGGGTGGAGGACCGGCTATCGGCCTTGGGGAACTGCATT
GTGGCCAATGATCACGTGGCGCTCGTGCATACCGACTTGGACCGGGAAAC
GGAAGAAATTCTTGCCGACGTCCTAGGCGTAGAAGTCTTCCGTCAGACAA
TTGCGGGCAATGCGCTGGTAGGCAGCTATTCGATCATTACGAATCAAGGG
GGAATGGTGCATCCGAAGACGACGGTGGAGGACTTAGAGGAATTGTCTTC
ATTGCTGCAGATCCCCTTAGTGGCGGGGACGATTAATCGGGGGAGCGACG
TGTTGGGAGCGGGGTTGGTGGCGAATGATTGGGCGGCATTTTGTGGATTG
GACACCACGTCGACTGAGATCAGTGTTGTGGAGTCCATATTCAAGCTGCA
GGATGCGGTGCCCATGAACGTGGTCAAGGGGCTGAGGACGAGTTTGATCG
ACTCCATGGCGTAGATGGCTACACGTCTTCAGTTCGAGAACAGCAATGAG
ATTGGCGTATTTTCCAGACTTACCAATAGCTACTGCTTGACAGCTCTGGG
CGGCAGCGAGAATTTCTACAGTGTATTTGAACAGGAGCTGGCAGATCATA
TCCCCGTCATTCATGCCTCGGTGGCTGGTTGCCGGTTCATTGGTCGGGTG
ACGGTCGGAAACAAGAAGGGCTTGCTCGTGCCGAGTACGACCACAGACCA
GGAGCTGCAGCACATTCGCAATTCGTTGCCGGATGCTGTGGTGGTGCAGA
GGGTGGAGGACCGGCTATCGGCCTTGGGGAACTGCATTGTGGCCAATGAT
CACGTGGCGCTCGTGCATACCGACTTGGACCGGGAAACGGAAGAAATTCT
TGCCGACGTCCTAGGCGTAGAAGTCTTCCGTCAGACAATTGCGGGCAATG
CGCTGGTAGGCAGCTATTCGATCATTACGAATCAAGGGGGAATGGTGCAT
CCGAAGACGACGGTGGAGGACTTAGAGGAATTGTCTTCATTGCTGCAGAT
CCCCTTAGTGGCGGGGACGATTAATCGGGGGAGCGACGTGTTGGGAGCGG
GGTTGGTGGCGAATGATTGGGCGGCATTTTGTGGATTGGACACCACGTCG
ACTGAGATCAGTGTTGTGGAGTCCATATTCAAGCTGCAGGATGCGGTGCC
CATGAACGTGGTCAAGGGGCTGAGGACGAGTTTGATCGACTCCATGGCGT
AGATGGCTACACGTCTTCAGTTCGAGAACAGCAATGAGATTGGCGTATTT
TCCAGACTTACCAATAGCTACTGCTTGACAGCTCTGGGCGGCAGCGAGAA
TTTCTACAGTGTATTTGAACAGGAGCTGGCAGATCATATCCCCGTCATTC
ATGCCTCGGTGGCTGGTTGCCGGTTCATTGGTCGGGTGACGGTCGGAAAC
AAGAAGGGCTTGCTCGTGCCGAGTACGACCACAGACCAGGAGCTGCAGCA
CATTCGCAATTCGTTGCCGGATGCTGTGGTGGTGCAGAGGGTGGAGGACC
GGCTATCGGCCTTGGGGAACTGCATTGTGGCCAATGATCACGTGGCGCTC
GTGCATACCGACTTGGACCGGGAAACGGAAGAAATTCTTGCCGACGTCCT
AGGCGTAGAAGTCTTCCGTCAGACAATTGCGGGCAATGCGCTGGTAGGCA
GCTATTCGATCATTACGAATCAAGGGGGAATGGTGCATCCGAAGACGACG
GTGGAGGACTTAGAGGAATTGTCTTCATTGCTGCAGATCCCCTTAGTGGC
GGGGACGATTAATCGGGGGAGCGACGTGTTGGGAGCGGGGTTGGTGGCGA
ATGATTGGGCGGCATTTTGTGGATTGGACACCACGTCGACTGAGATCAGT
GTTGTGGAGTCCATATTCAAGCTGCAGGATGCGGTGCCCATGAACGTGGT
CAAGGGGCTGAGGACGAGTTTGATCGACTCCATGGCGTAG

Synonyms

Publications