jgi.p|Nanoce1779_2|532268, mRNA_8330 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532268
Unique Name	mRNA_8330
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1029
Alignment location	scaffold_23:384699..385829 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532354
Track	FilteredModels2
ProteinId	532268

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:384699..385829 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532268	gene_8330	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532268	mRNA_8330-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8330	CDS_8330	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:384699..385829+
coding sequence from alignment at scaffold_23:384699..385829+

mRNA sequence

>mRNA_8330 ID=mRNA_8330|Name=jgi.p|Nanoce1779_2|532268|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
ATGTTTGACGATGACTCCCAGAAAATGTGCGTGTTTGTTAAAAGGGATGA
TAAGCTGGACTTAATGGGTGCCGGCATTTACGGTAACAAAGCACGCAAAC
TCTGGGCCTTGGCTTCTTCTTCCTCCTCTTCCTCCGCCCCGTTTCCGTCA
GTGTGCGTTAGCTGGGGAGGGCCCCAAAGCAACGCACTCTTGGCACTGGC
AGGCTTGGTGTGTGGGGTGTGGGAAAAGAAGTTGGTGTACTACACTAAAA
GCATTCCGGAATGGCTGAAAGCCCGGCCCTTGGGCAACTACCAAAGGGCG
CTTGAGTTGGGCGTGGATTTCCGGGAGCTACCCGCGGCCGAGTATCGAGC
CCTCTTCAGCACTGAGAGTGAAGGGGGAGGAGGGGGAGCAAGAAGAGGAG
CAAGGGGGGAAGAAGGCCATGATATCCTGCTTGTCCCTCAAGGGGCAGCG
TTCCAAGGCGCGGAGGAGGGGCTGCGGCTTCTGGCGGTCGAGATAAAGGA
CTGGTGGGGATTGGAGAAGAGCAAGATGGAGGCTGGGATGGCAAACGGCG
CCTCTCTCGCGGTCGTGCTCCCGGCGGGCACAGGGACCACGGCTTTGTAC
CTGGCGAAGCACTTGCGGAGAATGGCGAGGGAGAATGGACAGGGGAATGG
GGAGATAATGGTATATGCGGTGCCCTGTGTGGGAGACGGCGAGTACTTGA
AGTCCCAAATGGCTCGTCTGTCGTCATCAGGAGGAAGGGAGGGAGGGAAC
ATGGAAGAAGAGGATTACGTCCCTCATGTACTGGAAGGCTCCGTACCCCA
CGTGTTTGGCAAGCCCGAGCACGGCCTTTTAGTCATATGGCAGGAACTAA
AAGAGGAGCACGGTCTGGAGCTGGACCTGCTATATGGACCTCATGCTTGG
CGGGCGATGAGGGAGAACTGGGGGGTCCTGGCCGCGAGGCATCGGTCCGT
GTTGTACATCCACACGGGGGGCATGGAGGGGCTGGCTAGTCAGCTGGCAC
GGTACCGGCGTTTGGGGATGCTTAAATGA

protein sequence of jgi.p|Nanoce1779_2|532268

>mRNA_8330-protein ID=mRNA_8330-protein|Name=jgi.p|Nanoce1779_2|532268|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MFDDDSQKMCVFVKRDDKLDLMGAGIYGNKARKLWALASSSSSSSAPFPS
VCVSWGGPQSNALLALAGLVCGVWEKKLVYYTKSIPEWLKARPLGNYQRA
LELGVDFRELPAAEYRALFSTESEGGGGGARRGARGEEGHDILLVPQGAA
FQGAEEGLRLLAVEIKDWWGLEKSKMEAGMANGASLAVVLPAGTGTTALY
LAKHLRRMARENGQGNGEIMVYAVPCVGDGEYLKSQMARLSSSGGREGGN
MEEEDYVPHVLEGSVPHVFGKPEHGLLVIWQELKEEHGLELDLLYGPHAW
RAMRENWGVLAARHRSVLYIHTGGMEGLASQLARYRRLGMLK*

mRNA from alignment at scaffold_23:384699..385829+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8330 ID=mRNA_8330|Name=jgi.p|Nanoce1779_2|532268|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at scaffold_23:384699..385829+ (Nannochloropsis oceanica)
ATGTTTGACGATGACTCCCAGAAAATGTGCGTGTTTGTTAAAAGGGATGA
TAAGCTGGACTTAATGGGTGCCGGCATTTACGGTAACAAAGCACGCAAAC
TCTGGGCCTTGGCTTCTTCTTCCTCCTCTTCCTCCGCCCCGTTTCCGTCA
GTGTGCGTTAGCTGGGGAGGGCCCCAAAGCAACGCACTCTTGGCACTGGC
AGGCTTGGTGTGTGGGGTGTGGGAAAAGAAGTTGGTGTACTACACTAAAA
GCATTCCGGAATGGCTGAAAGCCCGGCCCTTGGGCAACTACCAAAGGGCG
CTTGAGTTGGGCGTGGATTTCCGGGAGCTACCCGCGGCCGAGTATCGAGC
CCTCTTCAGCACTGAGAGTGAAGGGGGAGGAGGGGGAGCAAGAAGAGGAG
CAGTAGAGAGAAGAGAAGGCGGAGGAGGAAAAGAAAGAACGATGACGCTG
ACGGTGTCCCTGAAAGATTTGCTTATTAGTCAGGAGGATGGCTCCAATGA
AGAGAGGGGGGAAGAAGGCCATGATATCCTGCTTGTCCCTCAAGGGGCAG
CGTTCCAAGGCGCGGAGGAGGGGCTGCGGCTTCTGGCGGTCGAGATAAAG
GACTGGTGGGGATTGGAGAAGAGCAAGATGGAGGCTGGGATGGCAAACGG
CGCCTCTCTCGCGGTCGTGCTCCCGGCGGGCACAGGGACCACGGCTTTGT
ACCTGGCGAAGCACTTGCGGAGAATGGCGAGGGAGAATGGACAGGGGAAT
GGGGAGATAATGGTATATGCGGTGCCCTGTGTGGGAGACGGCGAGTACTT
GAAGTCCCAAATGGCTCGTCTGTCGTCATCAGGAGGAAGGGAGGGAGGGA
ACATGGAAGAAGAGGATTACGTCCCTCATGTACTGGAAGGCTCCGTACCC
CACGTGTTTGGCAAGCCCGAGCACGGCCTTTTAGTCATATGGCAGGAACT
AAAAGAGGAGCACGGTCTGGAGCTGGACCTGCTATATGGACCTCATGCTT
GGCGGGCGATGAGGGAGAACTGGGGGGTCCTGGCCGCGAGGCATCGGTCC
GTGTTGTACATCCACACGGGGGGCATGGAGGGGCTGGCTAGTCAGCTGGC
ACGGTACCGGCGTTTGGGGATGCTTAAATGA

Coding sequence (CDS) from alignment at scaffold_23:384699..385829+

>mRNA_8330 ID=mRNA_8330|Name=jgi.p|Nanoce1779_2|532268|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_23:384699..385829+ (Nannochloropsis oceanica)
ATGTTTGACGATGACTCCCAGAAAATGTGCGTGTTTGTTAAAAGGGATGA
TAAGCTGGACTTAATGGGTGCCGGCATTTACGGTAACAAAGCACGCAAAC
TCTGGGCCTTGGCTTCTTCTTCCTCCTCTTCCTCCGCCCCGTTTCCGTCA
GTGTGCGTTAGCTGGGGAGGGCCCCAAAGCAACGCACTCTTGGCACTGGC
AGGCTTGGTGTGTGGGGTGTGGGAAAAGAAGTTGGTGTACTACACTAAAA
GCATTCCGGAATGGCTGAAAGCCCGGCCCTTGGGCAACTACCAAAGGGCG
CTTGAGTTGGGCGTGGATTTCCGGGAGCTACCCGCGGCCGAGTATCGAGC
CCTCTTCAGCACTGAGAGTGAAGGGGGAGGAGGGGGAGCAAGAAGAGGAG
CAAGGGGGGAAGAAGGCCATGATATCCTGCTTGTCCCTCAAGGGGCAGCG
TTCCAAGGCGCGGAGGAGGGGCTGCGGCTTCTGGCGGTCGAGATAAAGGA
CTGGTGGGGATTGGAGAAGAGCAAGATGGAGGCTGGGATGGCAAACGGCG
CCTCTCTCGCGGTCGTGCTCCCGGCGGGCACAGGGACCACGGCTTTGTAC
CTGGCGAAGCACTTGCGGAGAATGGCGAGGGAGAATGGACAGGGGAATGG
GGAGATAATGGTATATGCGGTGCCCTGTGTGGGAGACGGCGAGTACTTGA
AGTCCCAAATGGCTCGTCTGTCGTCATCAGGAGGAAGGGAGGGAGGGAAC
ATGGAAGAAGAGGATTACGTCCCTCATGTACTGGAAGGCTCCGTACCCCA
CGTGTTTGGCAAGCCCGAGCACGGCCTTTTAGTCATATGGCAGGAACTAA
AAGAGGAGCACGGTCTGGAGCTGGACCTGCTATATGGACCTCATGCTTGG
CGGGCGATGAGGGAGAACTGGGGGGTCCTGGCCGCGAGGCATCGGTCCGT
GTTGTACATCCACACGGGGGGCATGGAGGGGCTGGCTAGTCAGCTGGCAC
GGTACCGGCGTTTGGGGATGCTTAAATGAATGTTTGACGATGACTCCCAG
AAAATGTGCGTGTTTGTTAAAAGGGATGATAAGCTGGACTTAATGGGTGC
CGGCATTTACGGTAACAAAGCACGCAAACTCTGGGCCTTGGCTTCTTCTT
CCTCCTCTTCCTCCGCCCCGTTTCCGTCAGTGTGCGTTAGCTGGGGAGGG
CCCCAAAGCAACGCACTCTTGGCACTGGCAGGCTTGGTGTGTGGGGTGTG
GGAAAAGAAGTTGGTGTACTACACTAAAAGCATTCCGGAATGGCTGAAAG
CCCGGCCCTTGGGCAACTACCAAAGGGCGCTTGAGTTGGGCGTGGATTTC
CGGGAGCTACCCGCGGCCGAGTATCGAGCCCTCTTCAGCACTGAGAGTGA
AGGGGGAGGAGGGGGAGCAAGAAGAGGAGCAAGGGGGGAAGAAGGCCATG
ATATCCTGCTTGTCCCTCAAGGGGCAGCGTTCCAAGGCGCGGAGGAGGGG
CTGCGGCTTCTGGCGGTCGAGATAAAGGACTGGTGGGGATTGGAGAAGAG
CAAGATGGAGGCTGGGATGGCAAACGGCGCCTCTCTCGCGGTCGTGCTCC
CGGCGGGCACAGGGACCACGGCTTTGTACCTGGCGAAGCACTTGCGGAGA
ATGGCGAGGGAGAATGGACAGGGGAATGGGGAGATAATGGTATATGCGGT
GCCCTGTGTGGGAGACGGCGAGTACTTGAAGTCCCAAATGGCTCGTCTGT
CGTCATCAGGAGGAAGGGAGGGAGGGAACATGGAAGAAGAGGATTACGTC
CCTCATGTACTGGAAGGCTCCGTACCCCACGTGTTTGGCAAGCCCGAGCA
CGGCCTTTTAGTCATATGGCAGGAACTAAAAGAGGAGCACGGTCTGGAGC
TGGACCTGCTATATGGACCTCATGCTTGGCGGGCGATGAGGGAGAACTGG
GGGGTCCTGGCCGCGAGGCATCGGTCCGTGTTGTACATCCACACGGGGGG
CATGGAGGGGCTGGCTAGTCAGCTGGCACGGTACCGGCGTTTGGGGATGC
TTAAATGA

Synonyms

Publications