jgi.p|Nanoce1779_2|601629, mRNA_8332 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601629
Unique NamemRNA_8332
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length519
Alignment locationscaffold_23:387287..387960 -

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Properties
Property NameValue
TranscriptId601715
TrackFilteredModels2
ProteinId601629
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:387287..387960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601629gene_8332Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601629mRNA_8332-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8332CDS_8332Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8332 ID=mRNA_8332|Name=jgi.p|Nanoce1779_2|601629|organism=Nannochloropsis oceanica|type=mRNA|length=519bp
ACTACTCGAAGATTCCACGAATGTCGTTGTGATATATGCAGGAGGAAAGA
GAAGAGAGAGAATGAAAAGAGGAAGGAAAAAAAAAGCACCAAACAAACCG
AGAACAAAAGACTGAAAGAGAGGGAAGGATGTTGCGGCGCGTACATATAT
ACCGGAGATCAGGCACAGTTCACCAATCGGTCAGCCCGGTACAGCAATTG
CACCGTCGGTGGGCGGGTCATGTTCATCGAAACCATGGTAGGGTGCAAAT
TTAGCTTCTTAAATGCTTTGTCAACGTCCTCGTTCTCGCTGACACTTGCA
GAAATCCCAAACTCGGCGAGCTCATCAGTAGCAAGAACAGCATCTCCTCC
TTGGACACTGACTAGGACTCGGGAGGAAGACAACAAGGCAAGACTGACAA
GGAGTCAAAAGGACCACAGTTTACTGATGATGACACGGTGCTGAGAACAA
CGCGGAGGGGCTATCGGCATGTTTGCTTGCTTGCTTATGGGACTTTGGCG
CGGGCTGGTATATGTCTGT
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protein sequence of jgi.p|Nanoce1779_2|601629

>mRNA_8332-protein ID=mRNA_8332-protein|Name=jgi.p|Nanoce1779_2|601629|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MFIETMVGCKFSFLNALSTSSFSLTLAEIPNSASSSVARTASPPWTLTRT
REEDNKARLTRSQKDHSLLMMTRC*
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mRNA from alignment at scaffold_23:387287..387960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8332 ID=mRNA_8332|Name=jgi.p|Nanoce1779_2|601629|organism=Nannochloropsis oceanica|type=mRNA|length=674bp|location=Sequence derived from alignment at scaffold_23:387287..387960- (Nannochloropsis oceanica)
ACTACTCGAAGATTCCACGAATGTCGTTGTGATATATGCAGGAGGAAAGA
GAAGAGAGAGAATGAAAAGAGGAAGGAAAAAAAAAGCACCAAACAAACCG
AGAACAAAAGACTGAAAGAGAGGGAAGGATGTTGCGGCGCGTACATATAT
ACCGGAGATCAGGCACAGTTCACCAATCGGTCAGCCCGGTACAGCAATTG
CACCGTCGGTGGGCGGGTCATGTTCATCGAAACCATGGTAGGGTGCAAAT
TTAGCTTCTTAAATGCTTTGTCAACGTCCTCGTTCTCGCTGACACTTGCA
GAAATCCCAAACTCGGCGAGCTCATCAGTAGCAAGAACAGCATCTCCTCC
TTGGACACTGTGTGCGATAGGAATTGGAGTGTAATAGGATTGATACGAGA
TGATTGATGAAGGCTCAAAGGCGGCATAGGTAAAGTAGTCCGAGCCACCT
CCGATGGAAAGCACAGGTACCCCGGGCTTGATAGACGAAACAAATCAGGT
CCAAATACACACCTGACTAGGACTCGGGAGGAAGACAACAAGGCAAGACT
GACAAGGAGTCAAAAGGACCACAGTTTACTGATGATGACACGGTGCTGAG
AACAACGCGGAGGGGCTATCGGCATGTTTGCTTGCTTGCTTATGGGACTT
TGGCGCGGGCTGGTATATGTCTGT
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Coding sequence (CDS) from alignment at scaffold_23:387287..387960-

>mRNA_8332 ID=mRNA_8332|Name=jgi.p|Nanoce1779_2|601629|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_23:387287..387960- (Nannochloropsis oceanica)
CTGACTAGGACTCGGGAGGAAGACAACAAGGCAAGACTGACAAGGAGTCA
AAAGGACCACAGTTTACTGATGATGACACGGTGCTGAATGTTCATCGAAA
CCATGGTAGGGTGCAAATTTAGCTTCTTAAATGCTTTGTCAACGTCCTCG
TTCTCGCTGACACTTGCAGAAATCCCAAACTCGGCGAGCTCATCAGTAGC
AAGAACAGCATCTCCTCCTTGGACACTGACTAGGACTCGGGAGGAAGACA
ACAAGGCAAGACTGACAAGGAGTCAAAAGGACCACAGTTTACTGATGATG
ACACGGTGCTGAATGTTCATCGAAACCATGGTAGGGTGCAAATTTAGCTT
CTTAAATGCTTTGTCAACGTCCTCGTTCTCGCTGACACTTGCAGAAATCC
CAAACTCGGCGAGCTCATCAGTAGCAAGAACAGCATCTCCTCCTTGGACA
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Synonyms
Publications