jgi.p|Nanoce1779_2|655484, mRNA_8347 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|655484
Unique Name	mRNA_8347
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2090
Alignment location	scaffold_23:430967..433056 +

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Properties


Property Name	Value
TranscriptId	655570
Track	FilteredModels2
ProteinId	655484

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:430967..433056 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655484	gene_8347	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655484	mRNA_8347-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8347	CDS_8347	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:430967..433056+
coding sequence from alignment at scaffold_23:430967..433056+

mRNA sequence

>mRNA_8347 ID=mRNA_8347|Name=jgi.p|Nanoce1779_2|655484|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp
GTGCGACGCGAGGGTGAAGAACTTCTTTCTTGCTTTTCCCATGACACACA
CAGCTCTCCCCCTCCACGCATCCCACTCACACTATCCTACCACCTTTGCC
TCCTTTCCATCGAGACTGATCAGTATACCCCCCCCTTTTTTGGGACACAG
GAAACCAGCCGACAACCCAGCCACAAGACGACCTCCCCAGCCCGGATACA
GACAAGCGCACTCGCGCCCGTACACTACCTCGACAAGCAATGGTGCTGCC
TACAGTGGAGGATGTGAAGGGCATGAAGGTCGTGGAGCTGAAGGCCGAGT
TGGCCAAGCACGACCTTCCCACGACGGGGCTGAAGGCCGAGTTGCAAAAA
CGGTTGCTCGAATACATTGAGAACGCGGGAGAAGGAGGAGAAGGAGGCGA
CGGCGGCAGCAGCGGCGCAGGTGGCAACGAAGTTGAGGAGACAGTGGCCG
GAGCTGTAACACTTAAGCTAAAGGAGGAGAAGGAGAGGGAGAAGGAGCAA
GAAGAGGTGAGTACAGAGTCGTCTGGTCGATCGCAACGCGGGCGTTCCCC
TTCCAAGAAAGCGGGCCACGTCCAAGCACCATCCCCGGGTCGTAAGGCGA
AAAAAGAGGAGGCGGAGACAGAAGGGGAGGGAGAGGCCGAGACCAAGGGT
AGGAAGGAGGATAAAGAGGCGTTCATTGCCCCTGCTTCAGAGCCAGCTCC
CCCTGCACTTGCTGCTCCTGCTCCCGCGGCGGCACCACCGGTCAAGCCCA
CCATCACCCCTTCAGCTGTCCCATTACCGTCCTCTTCTTCCCCTTCTCCT
GTGGCTGTACCTCTAGCATTGACACCTGTCCCTGCTATGTCCACTGCTCC
GAAGCCTCAGACTTCTTCACGTGTGTTCGAGGCCGCCATGGCTGCGACAG
CTGCACCCGCTGCTGCTGCATCTGCTACTGCAGCTGTTCTCACTGGTAAA
GTCACCGCAGCTCCTACTCCTGCTCCTACCATGACGGAAAGCAAGCCTCC
TTCTGTCCCTCTTGCCGAGCCCACCGTCGAAGCTGATACAGAAGCTGCTG
CTCTTGCTGTTCCCGACCCCAAAAACCCTCGAAGCGCTACCTTGCGTGTC
GACGGTTTCATCCGCCCTTTCCGCCTGACTGGGGTGAAGGATCTACTGGA
AGAGAAGGGCGGAGGACCGCTCGTTGGTGAGCATGGGCTGTGGATGGACG
CCATCAAAACCCACTGCTACGCCACCTTTGAATCCGAAGATTCGGCCGCC
AGGGCGCGTGTGGCTCTCTACAATCTCACGTGGCCTGAGCGAGGTGGGGT
GTTGAGAGCCGACTTTGCGCCCATCACTGCACTGCAAGCCTTCGAGGACG
AGAAGGCTGCTAAGGCCGCGAAGGTCGCTCGGAAGTCTCTGCCCCCCATG
CCCACCCCGGCGGCAGTAGTATTGGGCGCTGCTGTAGCTTCTCCAGCAGC
GGCAACGACAGCGGCAGAAGCAGCAGCCAAGTTGAAGGTGAGCAATACCT
TGCTACCTAATGCTGTGTCTGTGGAAATGGGGGTGGCGGCGACGCCGGGC
CTGATCATGCATCCATCTGAGCTTCGAGAGACGACAGGTGGGGGTATGAA
AGTGCAGGGAGGAGGGGATACGAGTGGGAAGCGAGCAGACTCCTTTGAGA
TGGCGACAGGCGCAGCGCGAAGAAAGAGGGAGCTAGGCCCATCCCCGGAT
AGGAATGTCAAGGCCAAAGGGGAGAGGGAGGGGGATGGAGGGGCCGAGGG
AGGGAAGGGCAAGGAGAAAGAGAAGAAGAAGATGGCGATGCCTACCTTGG
AGGAATTGTTTCGTTTCACCACCACCCAGCCAAAGCTGTACTGGTTGCCT
TTGCCTGAGGACGAGGTGGCACTGAAGCGGCAGCGACTCAAGGAGTTGAA
GGCGGCGGAGAAGGCTCGGGGTAGGGAGCGAGACGCCACGCAGAAGGAGG
GGGCAATCCAGCGGGTGGCGGATAGCGGGGCACGGGGGGGGGGGGGGGCG
ACGAGGAGGGAGTGGGGATGGAGGGGGATGGAGGAACAGATCGCGGGCCC
GTTCGCGTTCGCCGCCTCGGAGACGATGGTGAGAGTGTAG

protein sequence of jgi.p|Nanoce1779_2|655484

>mRNA_8347-protein ID=mRNA_8347-protein|Name=jgi.p|Nanoce1779_2|655484|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MVLPTVEDVKGMKVVELKAELAKHDLPTTGLKAELQKRLLEYIENAGEGG
EGGDGGSSGAGGNEVEETVAGAVTLKLKEEKEREKEQEEVSTESSGRSQR
GRSPSKKAGHVQAPSPGRKAKKEEAETEGEGEAETKGRKEDKEAFIAPAS
EPAPPALAAPAPAAAPPVKPTITPSAVPLPSSSSPSPVAVPLALTPVPAM
STAPKPQTSSRVFEAAMAATAAPAAAASATAAVLTGKVTAAPTPAPTMTE
SKPPSVPLAEPTVEADTEAAALAVPDPKNPRSATLRVDGFIRPFRLTGVK
DLLEEKGGGPLVGEHGLWMDAIKTHCYATFESEDSAARARVALYNLTWPE
RGGVLRADFAPITALQAFEDEKAAKAAKVARKSLPPMPTPAAVVLGAAVA
SPAAATTAAEAAAKLKVSNTLLPNAVSVEMGVAATPGLIMHPSELRETTG
GGMKVQGGGDTSGKRADSFEMATGAARRKRELGPSPDRNVKAKGEREGDG
GAEGGKGKEKEKKKMAMPTLEELFRFTTTQPKLYWLPLPEDEVALKRQRL
KELKAAEKARGRERDATQKEGAIQRVADSGARGGGGATRREWGWRGMEEQ
IAGPFAFAASETMVRV*

mRNA from alignment at scaffold_23:430967..433056+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8347 ID=mRNA_8347|Name=jgi.p|Nanoce1779_2|655484|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp|location=Sequence derived from alignment at scaffold_23:430967..433056+ (Nannochloropsis oceanica)
GTGCGACGCGAGGGTGAAGAACTTCTTTCTTGCTTTTCCCATGACACACA
CAGCTCTCCCCCTCCACGCATCCCACTCACACTATCCTACCACCTTTGCC
TCCTTTCCATCGAGACTGATCAGTATACCCCCCCCTTTTTTGGGACACAG
GAAACCAGCCGACAACCCAGCCACAAGACGACCTCCCCAGCCCGGATACA
GACAAGCGCACTCGCGCCCGTACACTACCTCGACAAGCAATGGTGCTGCC
TACAGTGGAGGATGTGAAGGGCATGAAGGTCGTGGAGCTGAAGGCCGAGT
TGGCCAAGCACGACCTTCCCACGACGGGGCTGAAGGCCGAGTTGCAAAAA
CGGTTGCTCGAATACATTGAGAACGCGGGAGAAGGAGGAGAAGGAGGCGA
CGGCGGCAGCAGCGGCGCAGGTGGCAACGAAGTTGAGGAGACAGTGGCCG
GAGCTGTAACACTTAAGCTAAAGGAGGAGAAGGAGAGGGAGAAGGAGCAA
GAAGAGGTGAGTACAGAGTCGTCTGGTCGATCGCAACGCGGGCGTTCCCC
TTCCAAGAAAGCGGGCCACGTCCAAGCACCATCCCCGGGTCGTAAGGCGA
AAAAAGAGGAGGCGGAGACAGAAGGGGAGGGAGAGGCCGAGACCAAGGGT
AGGAAGGAGGATAAAGAGGCGTTCATTGCCCCTGCTTCAGAGCCAGCTCC
CCCTGCACTTGCTGCTCCTGCTCCCGCGGCGGCACCACCGGTCAAGCCCA
CCATCACCCCTTCAGCTGTCCCATTACCGTCCTCTTCTTCCCCTTCTCCT
GTGGCTGTACCTCTAGCATTGACACCTGTCCCTGCTATGTCCACTGCTCC
GAAGCCTCAGACTTCTTCACGTGTGTTCGAGGCCGCCATGGCTGCGACAG
CTGCACCCGCTGCTGCTGCATCTGCTACTGCAGCTGTTCTCACTGGTAAA
GTCACCGCAGCTCCTACTCCTGCTCCTACCATGACGGAAAGCAAGCCTCC
TTCTGTCCCTCTTGCCGAGCCCACCGTCGAAGCTGATACAGAAGCTGCTG
CTCTTGCTGTTCCCGACCCCAAAAACCCTCGAAGCGCTACCTTGCGTGTC
GACGGTTTCATCCGCCCTTTCCGCCTGACTGGGGTGAAGGATCTACTGGA
AGAGAAGGGCGGAGGACCGCTCGTTGGTGAGCATGGGCTGTGGATGGACG
CCATCAAAACCCACTGCTACGCCACCTTTGAATCCGAAGATTCGGCCGCC
AGGGCGCGTGTGGCTCTCTACAATCTCACGTGGCCTGAGCGAGGTGGGGT
GTTGAGAGCCGACTTTGCGCCCATCACTGCACTGCAAGCCTTCGAGGACG
AGAAGGCTGCTAAGGCCGCGAAGGTCGCTCGGAAGTCTCTGCCCCCCATG
CCCACCCCGGCGGCAGTAGTATTGGGCGCTGCTGTAGCTTCTCCAGCAGC
GGCAACGACAGCGGCAGAAGCAGCAGCCAAGTTGAAGGTGAGCAATACCT
TGCTACCTAATGCTGTGTCTGTGGAAATGGGGGTGGCGGCGACGCCGGGC
CTGATCATGCATCCATCTGAGCTTCGAGAGACGACAGGTGGGGGTATGAA
AGTGCAGGGAGGAGGGGATACGAGTGGGAAGCGAGCAGACTCCTTTGAGA
TGGCGACAGGCGCAGCGCGAAGAAAGAGGGAGCTAGGCCCATCCCCGGAT
AGGAATGTCAAGGCCAAAGGGGAGAGGGAGGGGGATGGAGGGGCCGAGGG
AGGGAAGGGCAAGGAGAAAGAGAAGAAGAAGATGGCGATGCCTACCTTGG
AGGAATTGTTTCGTTTCACCACCACCCAGCCAAAGCTGTACTGGTTGCCT
TTGCCTGAGGACGAGGTGGCACTGAAGCGGCAGCGACTCAAGGAGTTGAA
GGCGGCGGAGAAGGCTCGGGGTAGGGAGCGAGACGCCACGCAGAAGGAGG
GGGCAATCCAGCGGGTGGCGGATAGCGGGGCACGGGGGGGGGGGGGGGCG
ACGAGGAGGGAGTGGGGATGGAGGGGGATGGAGGAACAGATCGCGGGCCC
GTTCGCGTTCGCCGCCTCGGAGACGATGGTGAGAGTGTAG

Coding sequence (CDS) from alignment at scaffold_23:430967..433056+

>mRNA_8347 ID=mRNA_8347|Name=jgi.p|Nanoce1779_2|655484|organism=Nannochloropsis oceanica|type=CDS|length=1851bp|location=Sequence derived from alignment at scaffold_23:430967..433056+ (Nannochloropsis oceanica)
ATGGTGCTGCCTACAGTGGAGGATGTGAAGGGCATGAAGGTCGTGGAGCT
GAAGGCCGAGTTGGCCAAGCACGACCTTCCCACGACGGGGCTGAAGGCCG
AGTTGCAAAAACGGTTGCTCGAATACATTGAGAACGCGGGAGAAGGAGGA
GAAGGAGGCGACGGCGGCAGCAGCGGCGCAGGTGGCAACGAAGTTGAGGA
GACAGTGGCCGGAGCTGTAACACTTAAGCTAAAGGAGGAGAAGGAGAGGG
AGAAGGAGCAAGAAGAGGTGAGTACAGAGTCGTCTGGTCGATCGCAACGC
GGGCGTTCCCCTTCCAAGAAAGCGGGCCACGTCCAAGCACCATCCCCGGG
TCGTAAGGCGAAAAAAGAGGAGGCGGAGACAGAAGGGGAGGGAGAGGCCG
AGACCAAGGGTAGGAAGGAGGATAAAGAGGCGTTCATTGCCCCTGCTTCA
GAGCCAGCTCCCCCTGCACTTGCTGCTCCTGCTCCCGCGGCGGCACCACC
GGTCAAGCCCACCATCACCCCTTCAGCTGTCCCATTACCGTCCTCTTCTT
CCCCTTCTCCTGTGGCTGTACCTCTAGCATTGACACCTGTCCCTGCTATG
TCCACTGCTCCGAAGCCTCAGACTTCTTCACGTGTGTTCGAGGCCGCCAT
GGCTGCGACAGCTGCACCCGCTGCTGCTGCATCTGCTACTGCAGCTGTTC
TCACTGGTAAAGTCACCGCAGCTCCTACTCCTGCTCCTACCATGACGGAA
AGCAAGCCTCCTTCTGTCCCTCTTGCCGAGCCCACCGTCGAAGCTGATAC
AGAAGCTGCTGCTCTTGCTGTTCCCGACCCCAAAAACCCTCGAAGCGCTA
CCTTGCGTGTCGACGGTTTCATCCGCCCTTTCCGCCTGACTGGGGTGAAG
GATCTACTGGAAGAGAAGGGCGGAGGACCGCTCGTTGGTGAGCATGGGCT
GTGGATGGACGCCATCAAAACCCACTGCTACGCCACCTTTGAATCCGAAG
ATTCGGCCGCCAGGGCGCGTGTGGCTCTCTACAATCTCACGTGGCCTGAG
CGAGGTGGGGTGTTGAGAGCCGACTTTGCGCCCATCACTGCACTGCAAGC
CTTCGAGGACGAGAAGGCTGCTAAGGCCGCGAAGGTCGCTCGGAAGTCTC
TGCCCCCCATGCCCACCCCGGCGGCAGTAGTATTGGGCGCTGCTGTAGCT
TCTCCAGCAGCGGCAACGACAGCGGCAGAAGCAGCAGCCAAGTTGAAGGT
GAGCAATACCTTGCTACCTAATGCTGTGTCTGTGGAAATGGGGGTGGCGG
CGACGCCGGGCCTGATCATGCATCCATCTGAGCTTCGAGAGACGACAGGT
GGGGGTATGAAAGTGCAGGGAGGAGGGGATACGAGTGGGAAGCGAGCAGA
CTCCTTTGAGATGGCGACAGGCGCAGCGCGAAGAAAGAGGGAGCTAGGCC
CATCCCCGGATAGGAATGTCAAGGCCAAAGGGGAGAGGGAGGGGGATGGA
GGGGCCGAGGGAGGGAAGGGCAAGGAGAAAGAGAAGAAGAAGATGGCGAT
GCCTACCTTGGAGGAATTGTTTCGTTTCACCACCACCCAGCCAAAGCTGT
ACTGGTTGCCTTTGCCTGAGGACGAGGTGGCACTGAAGCGGCAGCGACTC
AAGGAGTTGAAGGCGGCGGAGAAGGCTCGGGGTAGGGAGCGAGACGCCAC
GCAGAAGGAGGGGGCAATCCAGCGGGTGGCGGATAGCGGGGCACGGGGGG
GGGGGGGGGCGACGAGGAGGGAGTGGGGATGGAGGGGGATGGAGGAACAG
ATCGCGGGCCCGTTCGCGTTCGCCGCCTCGGAGACGATGGTGAGAGTGTA
G

Synonyms

Publications