jgi.p|Nanoce1779_2|603710, mRNA_8715 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603710
Unique Name	mRNA_8715
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2076
Alignment location	scaffold_27:244624..246699 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	603796
Track	FilteredModels2
ProteinId	603710

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_27	supercontig	scaffold_27:244624..246699 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603710	gene_8715	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603710	mRNA_8715-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8715	CDS_8715	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_27:244624..246699-
coding sequence from alignment at scaffold_27:244624..246699-

mRNA sequence

>mRNA_8715 ID=mRNA_8715|Name=jgi.p|Nanoce1779_2|603710|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp
CCCTCTCCTGTGATGCCACCTCACAAACATGTCGAGACGCGGGAAAAACT
GACGAGGGCGGATTTGAGGAAGTGCGGAGAGAAAGAGATGGGATCAAGCC
TGTCACACTCTCTAGATTCTCCACCTCCGTGGTTGGAGTTTGCTCGCCGT
CTTCCGGCTCCTCAACCACTCTTTCTGCCTCAACCGCTCTTTCTGCCTCT
GCACGTGAGAGAGAGAGGAATGGAAAGGAGGCACCCTCGTGAAATATCTC
TCCATCCTCCCATTCCTCTCCTCCCCATCGCGTCTCGGCATGTTCATTCT
CTACCCCTTCCCCTTCACCTCCACCGTTACCATCTTCATCATCACTTTCA
TAATCATTATCATCACCATCACCACGTTTATCACAACTATCATCACCGTC
ATCACCACCCTCAACACCATCACCATCATCGTCATTATCATCATCATCAT
CATCATCATCACCATCATCACCATCATTTTCATCGTCGTCACTGTCACAA
TTATCACAGTTATTATCATCACTGTCATCCCCTGCAGATTCCTCCCCTTC
ATCCTCTTCTCCCTTATCACCACTATTAAACAAATTTCCCCCTCCCAGAC
GTAAAGCCAGGGAGCCATCAGAGAGGGGGTGCGGAAGGTATGCGAGAGGG
GAAATGCTGTCAGGCATACGACTGCCGAATTCACGGTGCCTACATTCCAA
CTCCCAGTCTTCCACCTCATCGAGCAGCTGCTGATCTTGATGCCCTTGTA
GCTGCTGCTCTTGCTGAAATTGTGATGATTCCCACTCTTCCATCTCATCA
ATATCTTGCCGTCCCAAAGCATCGGACGAGGAAGTGGACGAGGGGGAGGA
GGAGGAGAAGGAGTAAACCAAGCTGTCGTCTTCCTCAACAGCAATAGGCG
TTGGAAGAGGCGAGTTCGAGACGGCGGGAAGAGCTTCAATCAGGTCCAGG
GGAGTAGGAGGGGAGGGAAAGGAGGGTGGGTAGGCGGCTGAAGACGTGGA
AGCGGAGTGATCATTAGCCGTCCGCGAGATGATAAAATAGGACCAAGAGA
CATCGGAGTAGGAAGAGCGGGAAGAAGAGGAGGAACTAAGCCCGAAGGAG
AAGATGGCCTTAGTCTCAGCACTCTCTTCTGGCTCTTTATCATCTGCATT
TTCCTCACTCTCACCCCCAGGCATGTCAACTAGAGGCGCGTCAATGTCAA
CGGCAACATACACGCATCTACGCCCCTCCCCCGTGCCATCTTTCTCTTCC
TGCTCCCCTTCCTCCCGTTGCTCCTTCTCTGCCTGCTTGCTCCAAATCTC
TGACCCGACCGTAGAGAATGGGCATATAGCCGCCTCACGAGCAAAAGAGG
CTTGCAATTCCTGCAAGTCACCATCCTCTGCCCCAAACCCGAACTCGTCC
TCAGTCTCCGCCACAGCCGTTGCCGCCACCGCCGGGGCCACCACGGTCGT
CGTCAGCGTCGAGGACGCGTCTAGCACTGATGACGCTTCTTGAGACAGGG
AGAAAGGGGAAGACGGCGTAAAGGTGACCTCTGCATCCTGTTGGAGGGAA
GGAGGCAGAAAAGGAGGGACTGACGAAGCGAGAACACCAGTAAAAGAAGC
TGAAGCTGCTGCTGCGACCGGTAATGCTGCTGGGATGGGCCCCGATACTT
TGACAGCAACTAGCTGCCGGTGCTGTTCCACGTCGATGAAAAACGACGAG
AAAATGGGCGGTAAAAAAGAGGAACAGATGAGCGTCAAAGGCTCGTTCGC
ATTCCCTTTCGTTTCTTCCTCCCCCTCTCCTTCTATTTTCTCTCTCCTCT
CCTTTTCAGACAAGGCCGCCAACATGGAGAAGGACGACGACAAAGGCATT
GAGGGAGAGAATCCATGCCATATGAGCTGTGCTCGCAAAGACGAGAGAAG
AGAGGGAAGTGACACCACCTCACGCGAAGAGGCTACCTGCGGATGTGAAA
CTTGCCCCTGCTGCTGCTGCTCCGGCCGCTGGCGTGAGCCCACCGATGGG
CCAGTCGACCATGGACTCGGTGTAGAGGAGACGGCTGCGGTCAGCATGGA
CGGCTCGGATTGAGAAAGGGGGCCGT

protein sequence of jgi.p|Nanoce1779_2|603710

>mRNA_8715-protein ID=mRNA_8715-protein|Name=jgi.p|Nanoce1779_2|603710|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MPPHKHVETREKLTRADLRKCGEKEMGSSLSHSLDSPPPWLEFARRLPAP
QPLFLPQPLFLPLHVRERGMERRHPREISLHPPIPLLPIASRHVHSLPLP
LHLHRYHLHHHFHNHYHHHHHVYHNYHHRHHHPQHHHHHRHYHHHHHHHH
HHHHHFHRRHCHNYHSYYHHCHPLQIPPLHPLLPYHHY*

mRNA from alignment at scaffold_27:244624..246699-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8715 ID=mRNA_8715|Name=jgi.p|Nanoce1779_2|603710|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp|location=Sequence derived from alignment at scaffold_27:244624..246699- (Nannochloropsis oceanica)
CCCTCTCCTGTGATGCCACCTCACAAACATGTCGAGACGCGGGAAAAACT
GACGAGGGCGGATTTGAGGAAGTGCGGAGAGAAAGAGATGGGATCAAGCC
TGTCACACTCTCTAGATTCTCCACCTCCGTGGTTGGAGTTTGCTCGCCGT
CTTCCGGCTCCTCAACCACTCTTTCTGCCTCAACCGCTCTTTCTGCCTCT
GCACGTGAGAGAGAGAGGAATGGAAAGGAGGCACCCTCGTGAAATATCTC
TCCATCCTCCCATTCCTCTCCTCCCCATCGCGTCTCGGCATGTTCATTCT
CTACCCCTTCCCCTTCACCTCCACCGTTACCATCTTCATCATCACTTTCA
TAATCATTATCATCACCATCACCACGTTTATCACAACTATCATCACCGTC
ATCACCACCCTCAACACCATCACCATCATCGTCATTATCATCATCATCAT
CATCATCATCACCATCATCACCATCATTTTCATCGTCGTCACTGTCACAA
TTATCACAGTTATTATCATCACTGTCATCCCCTGCAGATTCCTCCCCTTC
ATCCTCTTCTCCCTTATCACCACTATTAAACAAATTTCCCCCTCCCAGAC
GTAAAGCCAGGGAGCCATCAGAGAGGGGGTGCGGAAGGTATGCGAGAGGG
GAAATGCTGTCAGGCATACGACTGCCGAATTCACGGTGCCTACATTCCAA
CTCCCAGTCTTCCACCTCATCGAGCAGCTGCTGATCTTGATGCCCTTGTA
GCTGCTGCTCTTGCTGAAATTGTGATGATTCCCACTCTTCCATCTCATCA
ATATCTTGCCGTCCCAAAGCATCGGACGAGGAAGTGGACGAGGGGGAGGA
GGAGGAGAAGGAGTAAACCAAGCTGTCGTCTTCCTCAACAGCAATAGGCG
TTGGAAGAGGCGAGTTCGAGACGGCGGGAAGAGCTTCAATCAGGTCCAGG
GGAGTAGGAGGGGAGGGAAAGGAGGGTGGGTAGGCGGCTGAAGACGTGGA
AGCGGAGTGATCATTAGCCGTCCGCGAGATGATAAAATAGGACCAAGAGA
CATCGGAGTAGGAAGAGCGGGAAGAAGAGGAGGAACTAAGCCCGAAGGAG
AAGATGGCCTTAGTCTCAGCACTCTCTTCTGGCTCTTTATCATCTGCATT
TTCCTCACTCTCACCCCCAGGCATGTCAACTAGAGGCGCGTCAATGTCAA
CGGCAACATACACGCATCTACGCCCCTCCCCCGTGCCATCTTTCTCTTCC
TGCTCCCCTTCCTCCCGTTGCTCCTTCTCTGCCTGCTTGCTCCAAATCTC
TGACCCGACCGTAGAGAATGGGCATATAGCCGCCTCACGAGCAAAAGAGG
CTTGCAATTCCTGCAAGTCACCATCCTCTGCCCCAAACCCGAACTCGTCC
TCAGTCTCCGCCACAGCCGTTGCCGCCACCGCCGGGGCCACCACGGTCGT
CGTCAGCGTCGAGGACGCGTCTAGCACTGATGACGCTTCTTGAGACAGGG
AGAAAGGGGAAGACGGCGTAAAGGTGACCTCTGCATCCTGTTGGAGGGAA
GGAGGCAGAAAAGGAGGGACTGACGAAGCGAGAACACCAGTAAAAGAAGC
TGAAGCTGCTGCTGCGACCGGTAATGCTGCTGGGATGGGCCCCGATACTT
TGACAGCAACTAGCTGCCGGTGCTGTTCCACGTCGATGAAAAACGACGAG
AAAATGGGCGGTAAAAAAGAGGAACAGATGAGCGTCAAAGGCTCGTTCGC
ATTCCCTTTCGTTTCTTCCTCCCCCTCTCCTTCTATTTTCTCTCTCCTCT
CCTTTTCAGACAAGGCCGCCAACATGGAGAAGGACGACGACAAAGGCATT
GAGGGAGAGAATCCATGCCATATGAGCTGTGCTCGCAAAGACGAGAGAAG
AGAGGGAAGTGACACCACCTCACGCGAAGAGGCTACCTGCGGATGTGAAA
CTTGCCCCTGCTGCTGCTGCTCCGGCCGCTGGCGTGAGCCCACCGATGGG
CCAGTCGACCATGGACTCGGTGTAGAGGAGACGGCTGCGGTCAGCATGGA
CGGCTCGGATTGAGAAAGGGGGCCGT

Coding sequence (CDS) from alignment at scaffold_27:244624..246699-

>mRNA_8715 ID=mRNA_8715|Name=jgi.p|Nanoce1779_2|603710|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_27:244624..246699- (Nannochloropsis oceanica)
ATGCCACCTCACAAACATGTCGAGACGCGGGAAAAACTGACGAGGGCGGA
TTTGAGGAAGTGCGGAGAGAAAGAGATGGGATCAAGCCTGTCACACTCTC
TAGATTCTCCACCTCCGTGGTTGGAGTTTGCTCGCCGTCTTCCGGCTCCT
CAACCACTCTTTCTGCCTCAACCGCTCTTTCTGCCTCTGCACGTGAGAGA
GAGAGGAATGGAAAGGAGGCACCCTCGTGAAATATCTCTCCATCCTCCCA
TTCCTCTCCTCCCCATCGCGTCTCGGCATGTTCATTCTCTACCCCTTCCC
CTTCACCTCCACCGTTACCATCTTCATCATCACTTTCATAATCATTATCA
TCACCATCACCACGTTTATCACAACTATCATCACCGTCATCACCACCCTC
AACACCATCACCATCATCGTCATTATCATCATCATCATCATCATCATCAC
CATCATCACCATCATTTTCATCGTCGTCACTGTCACAATTATCACAGTTA
TTATCATCACTGTCATCCCCTGCAGATTCCTCCCCTTCATCCTCTTCTCC
CTTATCACCACTATTAA

Synonyms

Publications