jgi.p|Nanoce1779_2|235783, mRNA_292 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|235783
Unique Name	mRNA_292
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1207
Alignment location	scaffold_3:720233..722052 +

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Properties


Property Name	Value
TranscriptId	235869
Track	FilteredModels2
ProteinId	235783

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:720233..722052 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|235783	gene_292	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|235783	mRNA_292-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_292	CDS_292	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:720233..722052+
coding sequence from alignment at scaffold_3:720233..722052+

mRNA sequence

>mRNA_292 ID=mRNA_292|Name=jgi.p|Nanoce1779_2|235783|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp
CAGAAGGAGTTGGAGGAAAAGGTGGGTGGGTTACTTTTGAATATGATGAT
GGGAGGTCGAGGGAGGGACCGGACTGGGAGTGAAGGTGGAAGCGGATGAA
GCGAGAAAGCATGACTTATCCGTGCTCCACCTTGTGTTCCTAATTTTTTT
GCCCTTTTTGCTCGCAGGCCAAGGACAAATGGTTGCTCGAAAACATGAAC
AACGAAGACGAAGGCCGATGGCGCTGTGCTGCGCCCGGGTGCACCAAGCT
GTTCAAAACAAGTGACTTCCTTCAGAAGCATTTGCTGCTCAAGCACAATG
GGGGGTTGGAACAGTCGTTGCGATTAGTTCGCCTTGGTCTCATCCGAACG
GCGTTTGAAGCCGACCAAGAGAAGCCACTGCCTCCCGTCCAGGTGGATAA
GGGGAGTGGTGTGTTGAAGGCGGTTCCGGTAGGGGAGATTCTGGTGGAAG
TAGCCGCGGTGTTGGGGAAGGATATGAGTCGCTGGCGCCAGCTGATTGAG
GAGAGCACCAGGCGGAAAATGCGAGGGAGGGAAGGAGGAAGAGGGGGAGG
AGGGGGAGGCGTGCCGAGGGGGAGGGTTGGGGGACATTATGGACCACGGC
CTGTGTTGGGGGTTGGAGGAGGAGCTGTAGGAGGGGCGTTGGCGGTTGGG
GGAGGAGGCGTGGGTGCTGCGGGGGTAGTGGGGATGGATGTGGGCCCGCC
GCGTGTTAGTAAAAACTATAAGGATATTGATGTGCCAAAGTCGAATCTGG
TGACGGTCGACTATGGAGACGTCGCTGTCCCTCCTCCGCCCAAACGCAGG
AAGAAGAGGCAGGCTGAAAAGGGCGGACCTGCCACATCAGAACCGGCAGC
TATCGGCGCGGGCGCCGAGTAGGAAGAAGGGATGGAGGAGGGGGAGGAGC
AGAGAAATTGGGTAGCGTTGGAAGATTGTACGACCTGACCTTGAATTATA
GCAGCAGCAGCAGCAGACGACTATCGTCAGTCTCTGATGTGTGACGTCCT
CTTCTGGACTCGTATTGTGTCGGTGGCATGCGAGTATTTTGTTTCTGGCC
TGAAGATGAGTGGGTTCAAGGTACGGAAAACTATCAATAGGAGGGAGACA
GGGCATGGGCCGTGCGCTTAAAATTGCATGATAAGGCAGGGATACGTCGG
GCGCTGGTATATTAGGCAAAAGGGCTGCCTTCCCCGCGTGGGTCTGGAAG
AAAATAG

protein sequence of jgi.p|Nanoce1779_2|235783

>mRNA_292-protein ID=mRNA_292-protein|Name=jgi.p|Nanoce1779_2|235783|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MNNEDEGRWRCAAPGCTKLFKTSDFLQKHLLLKHNGGLEQSLRLVRLGLI
RTAFEADQEKPLPPVQVDKGSGVLKAVPVGEILVEVAAVLGKDMSRWRQL
IEESTRRKMRGREGGRGGGGGGVPRGRVGGHYGPRPVLGVGGGAVGGALA
VGGGGVGAAGVVGMDVGPPRVSKNYKDIDVPKSNLVTVDYGDVAVPPPPK
RRKKRQAEKGGPATSEPAAIGAGAE*

mRNA from alignment at scaffold_3:720233..722052+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_292 ID=mRNA_292|Name=jgi.p|Nanoce1779_2|235783|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at scaffold_3:720233..722052+ (Nannochloropsis oceanica)
CAGAAGGAGTTGGAGGAAAAGGTGGGTGGGTTACTTTTGAATATGATGAT
GGGAGGTCGAGGGAGGGACCGGACTGGGAGTGAAGGTGGAAGCGGATGAA
GCGAGAAAGCATGACTTATCCGTGCTCCACCTTGTGTTCCTAATTTTTTT
GCCCTTTTTGCTCGCAGGCCAAGGACAAATGGTTGCTCGAAAACATGAAC
AACGAAGACGAAGGCCGATGGCGCTGTGCTGCGCCCGGGTGCACCAAGCT
GTTCAAAACAAGTGACTTCCTTCAGAAGCATTTGCTGCTCAAGCACAATG
GGGGGTTGGAACAGTCGTTGCGATTAGTTCGCCTTGGTCTCATCCGAACG
GCGTTTGAAGCCGACCAAGAGAAGCCACTGCCTCCCGTCCAGGTGGATAA
GGGGAGTGGTGTGTTGAAGGCGGTTCCGGTAGGGGAGATTCTGGTGGAAG
TAGCCGCGGTGTTGGGGAAGGATATGAGTCGCTGGCGCCAGCTGATTGAG
GAGAGCACCAGGCGGAAAATGCGAGGGAGGGAAGGAGGAAGAGGGGGAGG
AGGGGGAGGCGTGCCGAGGGGGAGGGTTGGGGGACATTATGGACCACGGC
CTGTGTTGGGGGTTGGAGGAGGAGCTGTAGGAGGGGCGTTGGCGGTTGGG
GGAGGAGGCGTGGGTGCTGCGGGGGTAGTGGGGATGGATGTGGGCCCGCC
GCGTGTTAGTAAAAACTATAAGGATATTGATGTGCCAAAGGTAAGGATGG
GGGGGAGATGAAAGCAGAGGGGAGGACGAGGGACATTGGTTTGCATGGGA
GGTGTGTGTGGTGTGAGTGTGTGAGGAGGAGAGAACAGCGTGTAGGAGTA
TGCGTGTATATGTGCGTGTGTGTTTTTCTCCTGATTTGATTTGCGCGCGT
GCAGTGAGTGATATGACGATCTTCCCACCCTTAAGTCAGAAGAGAGGCTC
TCGACGACTCTGTCGTCGTTTTCAGTGGTCTTTCATTCGTTACTTGGATG
GGAGAGTAAACGCCGCCCTGGGCATCAACTCTTTCTTTCCATCCTTCGTT
GCTTTTGCCGTTTTGGCGGAGCAGGGGGAGAGGTCTTTCCTCGTTTTGAG
GAAGTGTCCGCTTGGAGGCAAAGGGTTCCCAGATAGGCAGGCTTGCGAGA
GTAGGCGGCTGTCTTACCATGTGTTTAAGCGTATTGCTTGCTGATCTGCT
GCCTTAGTCGTTAAGCAAATATTTATTTCGCCTTTCTAATCTTTTCGTCT
TGCCCCTTTCGCTTTCGTTGTCTCATTCACCAAAAAATCCTCCCTCCATT
TCACCTCTATTTCTCCCTCCCTCCTTCCCTTCCTCTTTCCTCCCTCCAAA
CAGTCGAATCTGGTGACGGTCGACTATGGAGACGTCGCTGTCCCTCCTCC
GCCCAAACGCAGGAAGAAGAGGCAGGCTGAAAAGGGCGGACCTGCCACAT
CAGAACCGGCAGCTATCGGCGCGGGCGCCGAGTAGGAAGAAGGGATGGAG
GAGGGGGAGGAGCAGAGAAATTGGGTAGCGTTGGAAGATTGTACGACCTG
ACCTTGAATTATAGCAGCAGCAGCAGCAGACGACTATCGTCAGTCTCTGA
TGTGTGACGTCCTCTTCTGGACTCGTATTGTGTCGGTGGCATGCGAGTAT
TTTGTTTCTGGCCTGAAGATGAGTGGGTTCAAGGTACGGAAAACTATCAA
TAGGAGGGAGACAGGGCATGGGCCGTGCGCTTAAAATTGCATGATAAGGC
AGGGATACGTCGGGCGCTGGTATATTAGGCAAAAGGGCTGCCTTCCCCGC
GTGGGTCTGGAAGAAAATAG

Coding sequence (CDS) from alignment at scaffold_3:720233..722052+

>mRNA_292 ID=mRNA_292|Name=jgi.p|Nanoce1779_2|235783|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at scaffold_3:720233..722052+ (Nannochloropsis oceanica)
ATGAACAACGAAGACGAAGGCCGATGGCGCTGTGCTGCGCCCGGGTGCAC
CAAGCTGTTCAAAACAAGTGACTTCCTTCAGAAGCATTTGCTGCTCAAGC
ACAATGGGGGGTTGGAACAGTCGTTGCGATTAGTTCGCCTTGGTCTCATC
CGAACGGCGTTTGAAGCCGACCAAGAGAAGCCACTGCCTCCCGTCCAGGT
GGATAAGGGGAGTGGTGTGTTGAAGGCGGTTCCGGTAGGGGAGATTCTGG
TGGAAGTAGCCGCGGTGTTGGGGAAGGATATGAGTCGCTGGCGCCAGCTG
ATTGAGGAGAGCACCAGGCGGAAAATGCGAGGGAGGGAAGGAGGAAGAGG
GGGAGGAGGGGGAGGCGTGCCGAGGGGGAGGGTTGGGGGACATTATGGAC
CACGGCCTGTGTTGGGGGTTGGAGGAGGAGCTGTAGGAGGGGCGTTGGCG
GTTGGGGGAGGAGGCGTGGGTGCTGCGGGGGTAGTGGGGATGGATGTGGG
CCCGCCGCGTGTTAGTAAAAACTATAAGGATATTGATGTGCCAAAGTCGA
ATCTGGTGACGGTCGACTATGGAGACGTCGCTGTCCCTCCTCCGCCCAAA
CGCAGGAAGAAGAGGCAGGCTGAAAAGGGCGGACCTGCCACATCAGAACC
GGCAGCTATCGGCGCGGGCGCCGAGTAGATGAACAACGAAGACGAAGGCC
GATGGCGCTGTGCTGCGCCCGGGTGCACCAAGCTGTTCAAAACAAGTGAC
TTCCTTCAGAAGCATTTGCTGCTCAAGCACAATGGGGGGTTGGAACAGTC
GTTGCGATTAGTTCGCCTTGGTCTCATCCGAACGGCGTTTGAAGCCGACC
AAGAGAAGCCACTGCCTCCCGTCCAGGTGGATAAGGGGAGTGGTGTGTTG
AAGGCGGTTCCGGTAGGGGAGATTCTGGTGGAAGTAGCCGCGGTGTTGGG
GAAGGATATGAGTCGCTGGCGCCAGCTGATTGAGGAGAGCACCAGGCGGA
AAATGCGAGGGAGGGAAGGAGGAAGAGGGGGAGGAGGGGGAGGCGTGCCG
AGGGGGAGGGTTGGGGGACATTATGGACCACGGCCTGTGTTGGGGGTTGG
AGGAGGAGCTGTAGGAGGGGCGTTGGCGGTTGGGGGAGGAGGCGTGGGTG
CTGCGGGGGTAGTGGGGATGGATGTGGGCCCGCCGCGTGTTAGTAAAAAC
TATAAGGATATTGATGTGCCAAAGTCGAATCTGGTGACGGTCGACTATGG
AGACGTCGCTGTCCCTCCTCCGCCCAAACGCAGGAAGAAGAGGCAGGCTG
AAAAGGGCGGACCTGCCACATCAGAACCGGCAGCTATCGGCGCGGGCGCC
GAGTAG

Synonyms

Publications