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Properties
| Property Name | Value |
|---|
| TranscriptId | 575993 |
| Track | FilteredModels2 |
| ProteinId | 575907 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:57344..59927 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_18 ID=mRNA_18|Name=jgi.p|Nanoce1779_2|575907|organism=Nannochloropsis oceanica|type=mRNA|length=2159bp
CAGATCAAATAAAACAACAGCGCACCGGGGAAGATTATTGAAAGCCTAAG
GTGGCTCTGGCGCGGCTCTCTTTAAACCTGTGGTGAGTAATCGGCTTTGA
ACACGAAGAACACTGCAACTCAAAATCCCCTTACAGCATTCGCCGCTCAT
TGATTCGATTCATCCTGAACTCATTCATTCACGCACACTACACAAGCTTG
TGGGCCCTCTCCAAGAAAATGGCGTGGTCACCAGTCAGAGCAGTCGGGCA
TCCACTATGCCCCCCCGCCGGTGCCATTCCTGCTGTTGCTGCCGCTGCCG
ATCTGCGCGAGACCGACGAGGATGGAGGATGCTGGTCAGTGCTGGTGGAA
AAGAAGGACGAGGAGCTGGAGGAAAGTGTCCTAGGGCGAGAAGCAGAAGA
GGCGGATCAGTCAGTGGTAATTGAGGACTATAAATTCGGTCCTTCTACTA
GGCCGCTGCCGCCGCAGCGGCAGCAACACAAGCAGCACGAGGAGGAGACA
TCCTTGCCACCACAGCCATCCCCTACTCCGCCGCCCCCTTCCTACCAGAA
CGATGACAACGGCAACGAGACGAACGACGAAGGAGAAGAAGTGCACCATA
GAAATGAAGAAGTAGGAGAATGGGACTTCGTGCCCGAACTCGGAGAGGCC
AGCTTCCGGGATGACAAACCCACCTGCGACGACGATCGACACAACACCAG
GACCCCCGACACCCTGCCCATCTCTCCCTCCTGTCCCGCCCACTCGCCCT
TCTCACCGTCCTCGTCCTCCTCTTCCTCCCCCACCTGTCCTTCCCCCACC
GATGACTGGACAGATGTCGACGAGGACCGCACCGCTCTCCCTCCCTCCTG
CCCGCCCGCCCTCAACAGTCTGGTTTGTTGGATATATCTCGATGAATGGG
GCAACGAATTTGCCTACAGCCCCCAATCCCAAGTTCTCCTCGAGCATGAA
TGGCGAAATGGACGTGACCACGCGCAGCTCTGGATCCCCCCCCCTGCTTC
CTCGTCCTCTTCCTCATCCTCTTCCTCCCCCTCGATCATCCCCTACATTG
TCCACTTCGCCAGTTCCCCTTCTAACATTGAAGGCCAAGAAGAAGAAAGG
GAGGACCACATTCAAGTTAATCGCGTAACGGGCACTCAGCGGAAAGTTAA
ACGGCTGACGCGCGGCCCCAGGCCTCCAAGCGGCGTAGGGGGAGCAGTGC
GGAGGATGAAGGTGCGACTAAGGAAGGGGAAGAAGGCAATGGCAGCGCTG
GATGCCGAAACCGTCCTCCAGTACAGCAGGCAAAAATCTCTTCAAGCCGG
ACGTGCCCTCCACCATCGCGCGCCAAGCAAAGAGCAGGTGGCAACAGCAG
CTCTGGCAGTAGCGAGCAGGACGATAACTTACCTTGACAGGGTAGTGCGA
AGGATGAGTACTGAGGTGCAGCATCATAGGGAAAGGCAGCAGAAGGAGCA
GCAGCAGCAGCAGCAGCAGCAACAACAAAAACAGCAACAGCAACAGCAAC
AGTCTCGGCAGGAGCAAAGGCAGCAGGAACAACATCAACAACAGCAGCAT
CAAGAGGAAAAACAAGCACATCTCAAGAGCCACACATATAAGATTAGGAA
AAGTGATTTGCATTCTCCTCCCACTCACGATTTTTCGCCGTCACCTGCCA
CGAGAGAATCGCGGCAGGTGTTGGCCGGTGAGAGAGAAGGAAAAAGAGAA
CTGGACGCATGGGGAGGAGGAGGAGGAGGAGCTGAAGGAGGAGAGGAGGA
ATGGGTGGATAGTTTGGAAGCGAGCGTGAAGATAAGGCAGGGGCCTTTGC
TGGATTTGGGGGAAGAAGGCTATAAGTAAGAACATGTGGTGAGTTGGTGA
GGAGGCAGTAGGGCAAGCTCTAGAGCTGTAAAAAGGCAAAAAGGAATCAG
TCTGCTATGTCGCCGTACAACAATGGGAAAGTGGGAGAGAATGGCATGGG
GGGAAGGAAAGGGGGAGAGGGAATGCAGTGGATGGGCGAAGAGATTAGAA
GAAGGAAGCGCCCTATGAATCGATGTCAAGTATCTATTTCGTTTCAGTAT
TTACCGCATACATGGATCGAAGAACAAGTAAATGAAGAAAGAAAACACAA
AGAAATCCACCGGGTTGGTTTTTGGGGTCGTACAAATTGATGAGGGTTGT
AAAAGCGGG back to topprotein sequence of jgi.p|Nanoce1779_2|575907 >mRNA_18-protein ID=mRNA_18-protein|Name=jgi.p|Nanoce1779_2|575907|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MAWSPVRAVGHPLCPPAGAIPAVAAAADLRETDEDGGCWSVLVEKKDEEL
EESVLGREAEEADQSVVIEDYKFGPSTRPLPPQRQQHKQHEEETSLPPQP
SPTPPPPSYQNDDNGNETNDEGEEVHHRNEEVGEWDFVPELGEASFRDDK
PTCDDDRHNTRTPDTLPISPSCPAHSPFSPSSSSSSSPTCPSPTDDWTDV
DEDRTALPPSCPPALNSLVCWIYLDEWGNEFAYSPQSQVLLEHEWRNGRD
HAQLWIPPPASSSSSSSSSSPSIIPYIVHFASSPSNIEGQEEEREDHIQV
NRVTGTQRKVKRLTRGPRPPSGVGGAVRRMKVRLRKGKKAMAALDAETVL
QYSRQKSLQAGRALHHRAPSKEQVATAALAVASRTITYLDRVVRRMSTEV
QHHRERQQKEQQQQQQQQQQKQQQQQQQSRQEQRQQEQHQQQQHQEEKQA
HLKSHTYKIRKSDLHSPPTHDFSPSPATRESRQVLAGEREGKRELDAWGG
GGGGAEGGEEEWVDSLEASVKIRQGPLLDLGEEGY back to topmRNA from alignment at scaffold_3:57344..59927- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_18 ID=mRNA_18|Name=jgi.p|Nanoce1779_2|575907|organism=Nannochloropsis oceanica|type=mRNA|length=2584bp|location=Sequence derived from alignment at scaffold_3:57344..59927- (Nannochloropsis oceanica)
CAGATCAAATAAAACAACAGCGCACCGGGGAAGATTATTGAAAGCCTAAG
GTGGCTCTGGCGCGGCTCTCTTTAAACCTGTGGTGAGTAATCGGCTTTGA
ACACGAAGAACACTGCAACTCAAAATCCCCTTACAGCATTCGCCGCTCAT
TGATTCGATTCATCCTGAACTCATTCATTCACGCACACTACACAAGCTTG
TGGGCCCTCTCCAAGAAAATGGCGTGGTCACCAGTCAGAGCAGTCGGGCA
TCCACTATGCCCCCCCGCCGGTGCCATTCCTGCTGTTGCTGCCGCTGCCG
ATCTGCGCGAGACCGACGAGGATGGAGGATGCTGGTCAGTGCTGGTGGAA
AAGAAGGACGAGGAGCTGGAGGAAAGTGTCCTAGGGCGAGAAGCAGAAGA
GGCGGATCAGTCAGTGGTAATTGAGGACTATAAATTCGGTCCTTCTACTA
GGCCGCTGCCGCCGCAGCGGCAGCAACACAAGCAGCACGAGGAGGAGACA
TCCTTGCCACCACAGCCATCCCCTACTCCGCCGCCCCCTTCCTACCAGAA
CGATGACAACGGCAACGAGACGAACGACGAAGGAGAAGAAGTGCACCATA
GAAATGAAGAAGTAGGAGAATGGGACTTCGTGCCCGAACTCGGAGAGGCC
AGCTTCCGGGATGACAAACCCACCTGCGACGACGATCGACACAACACCAG
GACCCCCGACACCCTGCCCATCTCTCCCTCCTGTCCCGCCCACTCGCCCT
TCTCACCGTCCTCGTCCTCCTCTTCCTCCCCCACCTGTCCTTCCCCCACC
GATGACTGGACAGATGTCGACGAGGACCGCACCGCTCTCCCTCCCTCCTG
CCCGCCCGCCCTCAACAGTCTGGTTTGTTGGATATATCTCGATGAATGGG
GCAACGAATTTGCCTACAGCCCCCAATCCCAAGTTCTCCTCGAGCATGAA
TGGCGAAATGGACGTGACCACGCGCAGCTCTGGATCCCCCCCCCTGCTTC
CTCGTCCTCTTCCTCATCCTCTTCCTCCCCCTCGATCATCCCCTACATTG
TCCACTTCGCCAGTTCCCCTTCTAACATTGAAGGCCAAGAAGAAGAAAGG
GAGGACCACATTCAAGTTAATCGCGTAACGGGCACTCAGCGGAAAGTTAA
ACGGCTGACGCGCGGCCCCAGGCCTCCAAGCGGCGTAGGGGGAGCAGTGC
GGAGGATGAAGGTGCGACTAAGGAAGGGGAAGAAGGCAATGGCAGCGCTG
GGTAAGTAAGAAGCAAGGAGAGCGGGATGTGGAAGAATGGAACGTATGAA
GAGGGGATACTAGAATGATGGGGGTGCTCTCTAGATTTATTATGGTGGTG
TTATTGGTCAACTTTATTTTCTGGCAAAGCCCACGTGCACCCGGCACACA
TACCTGCCACTGGCCCTAGTCTGATGGTCATCCCCTCCCTCCCTATCGCC
CTCCCGCCCTCCCGCCCGCCCGTCCTCCCAGATGCCGAAACCGTCCTCCA
GTACAGCAGGCAAAAATCTCTTCAAGCCGGACGTGCCCTCCACCATCGCG
CGCCAAGCAAAGAGCAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGCAGG
ACGATAACTTACCTTGACAGGGTAGTGCGAAGGATGAGGTAGGGAAGGAG
GGAAGGAGAGAAGGAGAGAAAGAGGGAGGGAGGGAGGGAGGGAGGGAGAG
AGGGAGAGAGGGAGGGAGTGAGGGAGGGAAAGGAGGGAAGAGGCATACTT
GAAGGAGGATAGCGACAGCGACACACACAATCGGGATAATTTATGGAAAC
AAACCCACCAACTATCTTTTCATCTAACCGCAGTACTGAGGTGCAGCATC
ATAGGGAAAGGCAGCAGAAGGAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAAAAACAGCAACAGCAACAGCAACAGTCTCGGCAGGAGCAAAGGCAGCA
GGAACAACATCAACAACAGCAGCATCAAGAGGAAAAACAAGCACATCTCA
AGAGCCACACATATAAGATTAGGAAAAGTGATTTGCATTCTCCTCCCACT
CACGATTTTTCGCCGTCACCTGCCACGAGAGAATCGCGGCAGGTGTTGGC
CGGTGAGAGAGAAGGAAAAAGAGAACTGGACGCATGGGGAGGAGGAGGAG
GAGGAGCTGAAGGAGGAGAGGAGGAATGGGTGGATAGTTTGGAAGCGAGC
GTGAAGATAAGGCAGGGGCCTTTGCTGGATTTGGGGGAAGAAGGCTATAA
GTAAGAACATGTGGTGAGTTGGTGAGGAGGCAGTAGGGCAAGCTCTAGAG
CTGTAAAAAGGCAAAAAGGAATCAGTCTGCTATGTCGCCGTACAACAATG
GGAAAGTGGGAGAGAATGGCATGGGGGGAAGGAAAGGGGGAGAGGGAATG
CAGTGGATGGGCGAAGAGATTAGAAGAAGGAAGCGCCCTATGAATCGATG
TCAAGTATCTATTTCGTTTCAGTATTTACCGCATACATGGATCGAAGAAC
AAGTAAATGAAGAAAGAAAACACAAAGAAATCCACCGGGTTGGTTTTTGG
GGTCGTACAAATTGATGAGGGTTGTAAAAGCGGG back to topCoding sequence (CDS) from alignment at scaffold_3:57344..59927- >mRNA_18 ID=mRNA_18|Name=jgi.p|Nanoce1779_2|575907|organism=Nannochloropsis oceanica|type=CDS|length=4821bp|location=Sequence derived from alignment at scaffold_3:57344..59927- (Nannochloropsis oceanica)
TACTGAGGTGCAGCATCATAGGGAAAGGCAGCAGAAGGAGCAGCAGCAGC
AGCAGCAGCAGCAACAACAAAAACAGCAACAGCAACAGCAACAGTCTCGG
CAGGAGCAAAGGCAGCAGGAACAACATCAACAACAGCAGCATCAAGAGGA
AAAACAAGCACATCTCAAGAGCCACACATATAAGATTAGGAAAAGTGATT
TGCATTCTCCTCCCACTCACGATTTTTCGCCGTCACCTGCCACGAGAGAA
TCGCGGCAGGTGTTGGCCGGTGAGAGAGAAGGAAAAAGAGAACTGGACGC
ATGGGGAGGAGGAGGAGGAGGAGCTGAAGGAGGAGAGGAGGAATGGGTGG
ATAGTTTGGAAGCGAGCGTGAAGATAAGGCAGGGGCCTTTGCTGGATTTG
GGGGAAGAAGGCTATAAATGCCGAAACCGTCCTCCAGTACAGCAGGCAAA
AATCTCTTCAAGCCGGACGTGCCCTCCACCATCGCGCGCCAAGCAAAGAG
CAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGCAGGACGATAACTTACCT
TGACAGGGTAGTGCGAAGGATGAGATGGCGTGGTCACCAGTCAGAGCAGT
CGGGCATCCACTATGCCCCCCCGCCGGTGCCATTCCTGCTGTTGCTGCCG
CTGCCGATCTGCGCGAGACCGACGAGGATGGAGGATGCTGGTCAGTGCTG
GTGGAAAAGAAGGACGAGGAGCTGGAGGAAAGTGTCCTAGGGCGAGAAGC
AGAAGAGGCGGATCAGTCAGTGGTAATTGAGGACTATAAATTCGGTCCTT
CTACTAGGCCGCTGCCGCCGCAGCGGCAGCAACACAAGCAGCACGAGGAG
GAGACATCCTTGCCACCACAGCCATCCCCTACTCCGCCGCCCCCTTCCTA
CCAGAACGATGACAACGGCAACGAGACGAACGACGAAGGAGAAGAAGTGC
ACCATAGAAATGAAGAAGTAGGAGAATGGGACTTCGTGCCCGAACTCGGA
GAGGCCAGCTTCCGGGATGACAAACCCACCTGCGACGACGATCGACACAA
CACCAGGACCCCCGACACCCTGCCCATCTCTCCCTCCTGTCCCGCCCACT
CGCCCTTCTCACCGTCCTCGTCCTCCTCTTCCTCCCCCACCTGTCCTTCC
CCCACCGATGACTGGACAGATGTCGACGAGGACCGCACCGCTCTCCCTCC
CTCCTGCCCGCCCGCCCTCAACAGTCTGGTTTGTTGGATATATCTCGATG
AATGGGGCAACGAATTTGCCTACAGCCCCCAATCCCAAGTTCTCCTCGAG
CATGAATGGCGAAATGGACGTGACCACGCGCAGCTCTGGATCCCCCCCCC
TGCTTCCTCGTCCTCTTCCTCATCCTCTTCCTCCCCCTCGATCATCCCCT
ACATTGTCCACTTCGCCAGTTCCCCTTCTAACATTGAAGGCCAAGAAGAA
GAAAGGGAGGACCACATTCAAGTTAATCGCGTAACGGGCACTCAGCGGAA
AGTTAAACGGCTGACGCGCGGCCCCAGGCCTCCAAGCGGCGTAGGGGGAG
CAGTGCGGAGGATGAAGGTGCGACTAAGGAAGGGGAAGAAGGCAATGGCA
GCGCTGGTACTGAGGTGCAGCATCATAGGGAAAGGCAGCAGAAGGAGCAG
CAGCAGCAGCAGCAGCAGCAACAACAAAAACAGCAACAGCAACAGCAACA
GTCTCGGCAGGAGCAAAGGCAGCAGGAACAACATCAACAACAGCAGCATC
AAGAGGAAAAACAAGCACATCTCAAGAGCCACACATATAAGATTAGGAAA
AGTGATTTGCATTCTCCTCCCACTCACGATTTTTCGCCGTCACCTGCCAC
GAGAGAATCGCGGCAGGTGTTGGCCGGTGAGAGAGAAGGAAAAAGAGAAC
TGGACGCATGGGGAGGAGGAGGAGGAGGAGCTGAAGGAGGAGAGGAGGAA
TGGGTGGATAGTTTGGAAGCGAGCGTGAAGATAAGGCAGGGGCCTTTGCT
GGATTTGGGGGAAGAAGGCTATAAATGCCGAAACCGTCCTCCAGTACAGC
AGGCAAAAATCTCTTCAAGCCGGACGTGCCCTCCACCATCGCGCGCCAAG
CAAAGAGCAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGCAGGACGATAA
CTTACCTTGACAGGGTAGTGCGAAGGATGAGATGGCGTGGTCACCAGTCA
GAGCAGTCGGGCATCCACTATGCCCCCCCGCCGGTGCCATTCCTGCTGTT
GCTGCCGCTGCCGATCTGCGCGAGACCGACGAGGATGGAGGATGCTGGTC
AGTGCTGGTGGAAAAGAAGGACGAGGAGCTGGAGGAAAGTGTCCTAGGGC
GAGAAGCAGAAGAGGCGGATCAGTCAGTGGTAATTGAGGACTATAAATTC
GGTCCTTCTACTAGGCCGCTGCCGCCGCAGCGGCAGCAACACAAGCAGCA
CGAGGAGGAGACATCCTTGCCACCACAGCCATCCCCTACTCCGCCGCCCC
CTTCCTACCAGAACGATGACAACGGCAACGAGACGAACGACGAAGGAGAA
GAAGTGCACCATAGAAATGAAGAAGTAGGAGAATGGGACTTCGTGCCCGA
ACTCGGAGAGGCCAGCTTCCGGGATGACAAACCCACCTGCGACGACGATC
GACACAACACCAGGACCCCCGACACCCTGCCCATCTCTCCCTCCTGTCCC
GCCCACTCGCCCTTCTCACCGTCCTCGTCCTCCTCTTCCTCCCCCACCTG
TCCTTCCCCCACCGATGACTGGACAGATGTCGACGAGGACCGCACCGCTC
TCCCTCCCTCCTGCCCGCCCGCCCTCAACAGTCTGGTTTGTTGGATATAT
CTCGATGAATGGGGCAACGAATTTGCCTACAGCCCCCAATCCCAAGTTCT
CCTCGAGCATGAATGGCGAAATGGACGTGACCACGCGCAGCTCTGGATCC
CCCCCCCTGCTTCCTCGTCCTCTTCCTCATCCTCTTCCTCCCCCTCGATC
ATCCCCTACATTGTCCACTTCGCCAGTTCCCCTTCTAACATTGAAGGCCA
AGAAGAAGAAAGGGAGGACCACATTCAAGTTAATCGCGTAACGGGCACTC
AGCGGAAAGTTAAACGGCTGACGCGCGGCCCCAGGCCTCCAAGCGGCGTA
GGGGGAGCAGTGCGGAGGATGAAGGTGCGACTAAGGAAGGGGAAGAAGGC
AATGGCAGCGCTGGTACTGAGGTGCAGCATCATAGGGAAAGGCAGCAGAA
GGAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAAAACAGCAACAGCAAC
AGCAACAGTCTCGGCAGGAGCAAAGGCAGCAGGAACAACATCAACAACAG
CAGCATCAAGAGGAAAAACAAGCACATCTCAAGAGCCACACATATAAGAT
TAGGAAAAGTGATTTGCATTCTCCTCCCACTCACGATTTTTCGCCGTCAC
CTGCCACGAGAGAATCGCGGCAGGTGTTGGCCGGTGAGAGAGAAGGAAAA
AGAGAACTGGACGCATGGGGAGGAGGAGGAGGAGGAGCTGAAGGAGGAGA
GGAGGAATGGGTGGATAGTTTGGAAGCGAGCGTGAAGATAAGGCAGGGGC
CTTTGCTGGATTTGGGGGAAGAAGGCTATAAATGCCGAAACCGTCCTCCA
GTACAGCAGGCAAAAATCTCTTCAAGCCGGACGTGCCCTCCACCATCGCG
CGCCAAGCAAAGAGCAGGTGGCAACAGCAGCTCTGGCAGTAGCGAGCAGG
ACGATAACTTACCTTGACAGGGTAGTGCGAAGGATGAGATGGCGTGGTCA
CCAGTCAGAGCAGTCGGGCATCCACTATGCCCCCCCGCCGGTGCCATTCC
TGCTGTTGCTGCCGCTGCCGATCTGCGCGAGACCGACGAGGATGGAGGAT
GCTGGTCAGTGCTGGTGGAAAAGAAGGACGAGGAGCTGGAGGAAAGTGTC
CTAGGGCGAGAAGCAGAAGAGGCGGATCAGTCAGTGGTAATTGAGGACTA
TAAATTCGGTCCTTCTACTAGGCCGCTGCCGCCGCAGCGGCAGCAACACA
AGCAGCACGAGGAGGAGACATCCTTGCCACCACAGCCATCCCCTACTCCG
CCGCCCCCTTCCTACCAGAACGATGACAACGGCAACGAGACGAACGACGA
AGGAGAAGAAGTGCACCATAGAAATGAAGAAGTAGGAGAATGGGACTTCG
TGCCCGAACTCGGAGAGGCCAGCTTCCGGGATGACAAACCCACCTGCGAC
GACGATCGACACAACACCAGGACCCCCGACACCCTGCCCATCTCTCCCTC
CTGTCCCGCCCACTCGCCCTTCTCACCGTCCTCGTCCTCCTCTTCCTCCC
CCACCTGTCCTTCCCCCACCGATGACTGGACAGATGTCGACGAGGACCGC
ACCGCTCTCCCTCCCTCCTGCCCGCCCGCCCTCAACAGTCTGGTTTGTTG
GATATATCTCGATGAATGGGGCAACGAATTTGCCTACAGCCCCCAATCCC
AAGTTCTCCTCGAGCATGAATGGCGAAATGGACGTGACCACGCGCAGCTC
TGGATCCCCCCCCCTGCTTCCTCGTCCTCTTCCTCATCCTCTTCCTCCCC
CTCGATCATCCCCTACATTGTCCACTTCGCCAGTTCCCCTTCTAACATTG
AAGGCCAAGAAGAAGAAAGGGAGGACCACATTCAAGTTAATCGCGTAACG
GGCACTCAGCGGAAAGTTAAACGGCTGACGCGCGGCCCCAGGCCTCCAAG
CGGCGTAGGGGGAGCAGTGCGGAGGATGAAGGTGCGACTAAGGAAGGGGA
AGAAGGCAATGGCAGCGCTGG back to top
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