jgi.p|Nanoce1779_2|577208, mRNA_394 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577208
Unique NamemRNA_394
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length894
Alignment locationscaffold_3:981808..983019 +

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Properties
Property NameValue
TranscriptId577294
TrackFilteredModels2
ProteinId577208
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:981808..983019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577208gene_394Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577208mRNA_394-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_394CDS_394Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_394 ID=mRNA_394|Name=jgi.p|Nanoce1779_2|577208|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ACAGGTCTTTCGCCTTTCCCACTCTTCATCAAAGATGGCAAAGCGAGGAG
GTGCAACCAAGCTGGACGACTCCACAACCCTGAACCTGGGCCCCAAGGCC
GCGGAAGGGGAGCACGTCTTCGGTGTCGCTCACATATTCGCTTCCTTCAA
CGACACCTTCGTGCATGTCACTGATTTGTCTGGACGAGAGACCCTGTCAC
GTGTCACGGGAGGGATGAAGGTCAAGGCCGATCGTGACGAGGCGTCCCCG
TACGCGGCCATGCTTGCCGCACAGGACGTGGCCGTCAAGTGCAAGGAGCT
GGGCATCACGGCCGTGCACATCAAGATGCGTGCGACGGGCGGGAACAAGA
CCAAGTCCCCGGGGCCGGGAGCGCAACATGCTTTGCGTGCGTTGGCACGT
TCGGGCTTGAAGATTGGGCGTATTGAGGATGTGACTCCTGTCCCCACGGA
TAGCACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGTTTGTAAACAAAGG
AAGCAGAGAGTCGAAAGGGGGGACGGAGTGTGGGAGGGAAGGAGGGTAGT
AGGATGGAAAATTATGTTTATGCGATGCGGGGCGGGAGTTGCTTTGTCTC
CTTTTGTTTGTGAGCATTTAAACAAACAGAAAAGAGGCGGGACAAGTCGC
CCTTCCGCGACGAGGACGGTGAAGCGAGGAGGGGTATCAAGAGAGGGCGC
ACCCACGCTCTTCTTTCCTTAACTCCTTCCCCTGGCCTTTTCACCTTCTC
TTTTCGGGATCGGGGTTTTCCTTGTTCTGGATTTCTTGTCTTGAAGACAT
TTCTGGGTGGGATTTATCGGAGGTTGAAGGAGATAAGAAGATTCAGAGGA
TAAAAGAAGGAATGAGGGGCTTCGCGGCCCGGAAAGGATCATAA
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protein sequence of jgi.p|Nanoce1779_2|577208

>mRNA_394-protein ID=mRNA_394-protein|Name=jgi.p|Nanoce1779_2|577208|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSG
RETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRA
TGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGR
RL*
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mRNA from alignment at scaffold_3:981808..983019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_394 ID=mRNA_394|Name=jgi.p|Nanoce1779_2|577208|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at scaffold_3:981808..983019+ (Nannochloropsis oceanica)
ACAGGTCTTTCGCCTTTCCCACTCTTCATCAAAGATGGTAAGTCCACGCG
TTATGGCGAAGATTGGACGTTGACAGATGTGTATTGGGATTGCGAATGTG
GTTTTCGGTTTGTATCGCAATGGTGGACATGCTCCTTTCCACTCGTCACG
GGAAGAAGCATCACCCTTGTCGTGGCCTTACACGGCTAGCAGCCAAGGAG
GACTACAGCCCTTGTGTACATTTATGAGAAAAATGATGAGTGTAACGAGA
CACGTATGCTTTCCATGTCCCTCCGACAAAGCACAGACACAGAGCAAGTC
CTCATCATCTTCCCTCCCACGTGCTTCCTTCCTTTTTACCCACCCACCTA
AATAGGCAAAGCGAGGAGGTGCAACCAAGCTGGACGACTCCACAACCCTG
AACCTGGGCCCCAAGGCCGCGGAAGGGGAGCACGTCTTCGGTGTCGCTCA
CATATTCGCTTCCTTCAACGACACCTTCGTGCATGTCACTGATTTGTCTG
GACGAGAGACCCTGTCACGTGTCACGGGAGGGATGAAGGTCAAGGCCGAT
CGTGACGAGGCGTCCCCGTACGCGGCCATGCTTGCCGCACAGGACGTGGC
CGTCAAGTGCAAGGAGCTGGGCATCACGGCCGTGCACATCAAGATGCGTG
CGACGGGCGGGAACAAGACCAAGTCCCCGGGGCCGGGAGCGCAACATGCT
TTGCGTGCGTTGGCACGTTCGGGCTTGAAGATTGGGCGTATTGAGGATGT
GACTCCTGTCCCCACGGATAGCACCCGCCGAAAGAGTGGTCGCCGTGGTC
GTCGTTTGTAAACAAAGGAAGCAGAGAGTCGAAAGGGGGGACGGAGTGTG
GGAGGGAAGGAGGGTAGTAGGATGGAAAATTATGTTTATGCGATGCGGGG
CGGGAGTTGCTTTGTCTCCTTTTGTTTGTGAGCATTTAAACAAACAGAAA
AGAGGCGGGACAAGTCGCCCTTCCGCGACGAGGACGGTGAAGCGAGGAGG
GGTATCAAGAGAGGGCGCACCCACGCTCTTCTTTCCTTAACTCCTTCCCC
TGGCCTTTTCACCTTCTCTTTTCGGGATCGGGGTTTTCCTTGTTCTGGAT
TTCTTGTCTTGAAGACATTTCTGGGTGGGATTTATCGGAGGTTGAAGGAG
ATAAGAAGATTCAGAGGATAAAAGAAGGAATGAGGGGCTTCGCGGCCCGG
AAAGGATCATAA
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Coding sequence (CDS) from alignment at scaffold_3:981808..983019+

>mRNA_394 ID=mRNA_394|Name=jgi.p|Nanoce1779_2|577208|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_3:981808..983019+ (Nannochloropsis oceanica)
ATGGCAAAGCGAGGAGGTGCAACCAAGCTGGACGACTCCACAACCCTGAA
CCTGGGCCCCAAGGCCGCGGAAGGGGAGCACGTCTTCGGTGTCGCTCACA
TATTCGCTTCCTTCAACGACACCTTCGTGCATGTCACTGATTTGTCTGGA
CGAGAGACCCTGTCACGTGTCACGGGAGGGATGAAGGTCAAGGCCGATCG
TGACGAGGCGTCCCCGTACGCGGCCATGCTTGCCGCACAGGACGTGGCCG
TCAAGTGCAAGGAGCTGGGCATCACGGCCGTGCACATCAAGATGCGTGCG
ACGGGCGGGAACAAGACCAAGTCCCCGGGGCCGGGAGCGCAACATGCTTT
GCGTGCGTTGGCACGTTCGGGCTTGAAGATTGGGCGTATTGAGGATGTGA
CTCCTGTCCCCACGGATAGCACCCGCCGAAAGAGTGGTCGCCGTGGTCGT
CGTTTGTAAATGGCAAAGCGAGGAGGTGCAACCAAGCTGGACGACTCCAC
AACCCTGAACCTGGGCCCCAAGGCCGCGGAAGGGGAGCACGTCTTCGGTG
TCGCTCACATATTCGCTTCCTTCAACGACACCTTCGTGCATGTCACTGAT
TTGTCTGGACGAGAGACCCTGTCACGTGTCACGGGAGGGATGAAGGTCAA
GGCCGATCGTGACGAGGCGTCCCCGTACGCGGCCATGCTTGCCGCACAGG
ACGTGGCCGTCAAGTGCAAGGAGCTGGGCATCACGGCCGTGCACATCAAG
ATGCGTGCGACGGGCGGGAACAAGACCAAGTCCCCGGGGCCGGGAGCGCA
ACATGCTTTGCGTGCGTTGGCACGTTCGGGCTTGAAGATTGGGCGTATTG
AGGATGTGACTCCTGTCCCCACGGATAGCACCCGCCGAAAGAGTGGTCGC
CGTGGTCGTCGTTTGTAA
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Synonyms
Publications