jgi.p|Nanoce1779_2|576952, mRNA_320 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576952
Unique Name	mRNA_320
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	759
Alignment location	scaffold_3:793304..794388 +

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Properties


Property Name	Value
TranscriptId	577038
Track	FilteredModels2
ProteinId	576952

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:793304..794388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576952	gene_320	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576952	mRNA_320-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_320	CDS_320	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:793304..794388+
coding sequence from alignment at scaffold_3:793304..794388+

mRNA sequence

>mRNA_320 ID=mRNA_320|Name=jgi.p|Nanoce1779_2|576952|organism=Nannochloropsis oceanica|type=mRNA|length=759bp
AGTACCTCGCAGGCAGCCAGAAGATAGCTGTGGGTGTGGCGGCCAATGGG
GAATCTGAATCAGAGCTTGCGGGATAGGTACATGGCTAGCTTTGACAACG
TAGTGGAGGACATGTCCATTGCCCAGAAGTTGGAGGTGTACCAGGGGCTG
CAGCAACAGGCCTCGTTGCTGACTCAGATGGAGGGTCAGATCATGAAGTC
GCTTGAATCCTCTGCCATTGAAGAAGCCAGCCTTCGTGAACGCGAGGACT
TTTTAGAACGGCGCCGTCTAGCCTACATGAAGCGCATCGATCCCTTCTCC
CACCCCGAGGAGGACGACGATGACAACGACGACGAGAAAGTAGAGGAGTA
CGAATGCGAAAAGTTAAATGAAGATGAGAACCGAAGCCTACAGCTTCAGT
CCGTGGTGTCTATCGCCGTGCTAGACGGGCCGAGCGAGCAGAAGAAGAAA
GAAATTAAAACTTTCCTCGAGCAAGAGCTCCCAGAGATCCAGAAAAATGT
GGCGGTACGCGCACGGATGCTGTGGTTCAAGCAGAAGGAGTACGAAGATA
AGCTGGTAAAGACGCGGAATAAACTGATGGAGGTAAATGGTTTGATTGCT
GATATGGAGCCTGGTCTTCCGCCCATGAGCTTGACCCCAGAGACGGGAAT
AACTCTTCTTCCAAGCATGTAAAAACATATTTGACAAGTGTGCGTCTCAA
GACGGCGCATGCGAAAAAAGGAAGAAATGCCAGACTGAGAAGTTGTAAAT
GATTTTAAC

protein sequence of jgi.p|Nanoce1779_2|576952

>mRNA_320-protein ID=mRNA_320-protein|Name=jgi.p|Nanoce1779_2|576952|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MGNLNQSLRDRYMASFDNVVEDMSIAQKLEVYQGLQQQASLLTQMEGQIM
KSLESSAIEEASLREREDFLERRRLAYMKRIDPFSHPEEDDDDNDDEKVE
EYECEKLNEDENRSLQLQSVVSIAVLDGPSEQKKKEIKTFLEQELPEIQK
NVAVRARMLWFKQKEYEDKLVKTRNKLMEVNGLIADMEPGLPPMSLTPET
GITLLPSM*

mRNA from alignment at scaffold_3:793304..794388+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_320 ID=mRNA_320|Name=jgi.p|Nanoce1779_2|576952|organism=Nannochloropsis oceanica|type=mRNA|length=1085bp|location=Sequence derived from alignment at scaffold_3:793304..794388+ (Nannochloropsis oceanica)
AGTACCTCGCAGGCAGCCAGAAGATAGCTGTGGGTGTGGCGGCCAATGGG
GAATCTGAATCAGAGCTTGCGGGATAGGTAAGAAAAAGGTGGAGGACTGA
GGCCTGTGATCATCAAACCCACCCTACTCTTCCTTCCCTCGCACTTACGG
TATGGCGGTCAGGTACATGGCTAGCTTTGACAACGTAGTGGAGGACATGT
CCATTGCCCAGAAGTTGGAGGTGTACCAGGGGCTGCAGCAACAGGTGAGC
ACGAACACCCGACTCCTGACTACCCCCCTTATCCTCCATCCCTACGCGTC
TCAATCCTCCTTTTCATGTTTTTATCATCTAGGCCTCGTTGCTGACTCAG
ATGGAGGGTCAGATCATGAAGTCGCTTGAATCCTCTGCCATTGAAGAAGC
CAGCCTTCGTGAACGCGAGGTAGGATAGGTGGAGAGATCGCAGGGCGAAG
AACCGAAAGGACAGGAAATGTAAATTTGTCCATGTCTCCTTTTTCTCTCC
ATTTCCATCAGCCTTGACCTTGTATCCCACGCTAATGGCGCATTTGGATC
CACACCATTCTCATACGCTCAGGACTTTTTAGAACGGCGCCGTCTAGCCT
ACATGAAGCGCATCGATCCCTTCTCCCACCCCGAGGAGGACGACGATGAC
AACGACGACGAGAAAGTAGAGGAGTACGAATGCGAAAAGTTAAATGAAGA
TGAGAACCGAAGCCTACAGCTTCAGTCCGTGGTGTCTATCGCCGTGCTAG
ACGGGCCGAGCGAGCAGAAGAAGAAAGAAATTAAAACTTTCCTCGAGCAA
GAGCTCCCAGAGATCCAGAAAAATGTGGCGGTACGCGCACGGATGCTGTG
GTTCAAGCAGAAGGAGTACGAAGATAAGCTGGTAAAGACGCGGAATAAAC
TGATGGAGGTAAATGGTTTGATTGCTGATATGGAGCCTGGTCTTCCGCCC
ATGAGCTTGACCCCAGAGACGGGAATAACTCTTCTTCCAAGCATGTAAAA
ACATATTTGACAAGTGTGCGTCTCAAGACGGCGCATGCGAAAAAAGGAAG
AAATGCCAGACTGAGAAGTTGTAAATGATTTTAAC

Coding sequence (CDS) from alignment at scaffold_3:793304..794388+

>mRNA_320 ID=mRNA_320|Name=jgi.p|Nanoce1779_2|576952|organism=Nannochloropsis oceanica|type=CDS|length=2508bp|location=Sequence derived from alignment at scaffold_3:793304..794388+ (Nannochloropsis oceanica)
ATGGGGAATCTGAATCAGAGCTTGCGGGATAGGTACATGGCTAGCTTTGA
CAACGTAGTGGAGGACATGTCCATTGCCCAGAAGTTGGAGGTGTACCAGG
GGCTGCAGCAACAGGCCTCGTTGCTGACTCAGATGGAGGGTCAGATCATG
AAGTCGCTTGAATCCTCTGCCATTGAAGAAGCCAGCCTTCGTGAACGCGA
GGACTTTTTAGAACGGCGCCGTCTAGCCTACATGAAGCGCATCGATCCCT
TCTCCCACCCCGAGGAGGACGACGATGACAACGACGACGAGAAAGTAGAG
GAGTACGAATGCGAAAAGTTAAATGAAGATGAGAACCGAAGCCTACAGCT
TCAGTCCGTGGTGTCTATCGCCGTGCTAGACGGGCCGAGCGAGCAGAAGA
AGAAAGAAATTAAAACTTTCCTCGAGCAAGAGCTCCCAGAGATCCAGAAA
AATGTGGCGGTACGCGCACGGATGCTGTGGTTCAAGCAGAAGGAGTACGA
AGATAAGCTGGTAAAGACGCGGAATAAACTGATGGAGGTAAATGGTTTGA
TTGCTGATATGGAGCCTGGTCTTCCGCCCATGAGCTTGACCCCAGAGACG
GGAATAACTCTTCTTCCAAGCATGTAAATGGGGAATCTGAATCAGAGCTT
GCGGGATAGGTACATGGCTAGCTTTGACAACGTAGTGGAGGACATGTCCA
TTGCCCAGAAGTTGGAGGTGTACCAGGGGCTGCAGCAACAGGCCTCGTTG
CTGACTCAGATGGAGGGTCAGATCATGAAGTCGCTTGAATCCTCTGCCAT
TGAAGAAGCCAGCCTTCGTGAACGCGAGGACTTTTTAGAACGGCGCCGTC
TAGCCTACATGAAGCGCATCGATCCCTTCTCCCACCCCGAGGAGGACGAC
GATGACAACGACGACGAGAAAGTAGAGGAGTACGAATGCGAAAAGTTAAA
TGAAGATGAGAACCGAAGCCTACAGCTTCAGTCCGTGGTGTCTATCGCCG
TGCTAGACGGGCCGAGCGAGCAGAAGAAGAAAGAAATTAAAACTTTCCTC
GAGCAAGAGCTCCCAGAGATCCAGAAAAATGTGGCGGTACGCGCACGGAT
GCTGTGGTTCAAGCAGAAGGAGTACGAAGATAAGCTGGTAAAGACGCGGA
ATAAACTGATGGAGGTAAATGGTTTGATTGCTGATATGGAGCCTGGTCTT
CCGCCCATGAGCTTGACCCCAGAGACGGGAATAACTCTTCTTCCAAGCAT
GTAAATGGGGAATCTGAATCAGAGCTTGCGGGATAGGTACATGGCTAGCT
TTGACAACGTAGTGGAGGACATGTCCATTGCCCAGAAGTTGGAGGTGTAC
CAGGGGCTGCAGCAACAGGCCTCGTTGCTGACTCAGATGGAGGGTCAGAT
CATGAAGTCGCTTGAATCCTCTGCCATTGAAGAAGCCAGCCTTCGTGAAC
GCGAGGACTTTTTAGAACGGCGCCGTCTAGCCTACATGAAGCGCATCGAT
CCCTTCTCCCACCCCGAGGAGGACGACGATGACAACGACGACGAGAAAGT
AGAGGAGTACGAATGCGAAAAGTTAAATGAAGATGAGAACCGAAGCCTAC
AGCTTCAGTCCGTGGTGTCTATCGCCGTGCTAGACGGGCCGAGCGAGCAG
AAGAAGAAAGAAATTAAAACTTTCCTCGAGCAAGAGCTCCCAGAGATCCA
GAAAAATGTGGCGGTACGCGCACGGATGCTGTGGTTCAAGCAGAAGGAGT
ACGAAGATAAGCTGGTAAAGACGCGGAATAAACTGATGGAGGTAAATGGT
TTGATTGCTGATATGGAGCCTGGTCTTCCGCCCATGAGCTTGACCCCAGA
GACGGGAATAACTCTTCTTCCAAGCATGTAAATGGGGAATCTGAATCAGA
GCTTGCGGGATAGGTACATGGCTAGCTTTGACAACGTAGTGGAGGACATG
TCCATTGCCCAGAAGTTGGAGGTGTACCAGGGGCTGCAGCAACAGGCCTC
GTTGCTGACTCAGATGGAGGGTCAGATCATGAAGTCGCTTGAATCCTCTG
CCATTGAAGAAGCCAGCCTTCGTGAACGCGAGGACTTTTTAGAACGGCGC
CGTCTAGCCTACATGAAGCGCATCGATCCCTTCTCCCACCCCGAGGAGGA
CGACGATGACAACGACGACGAGAAAGTAGAGGAGTACGAATGCGAAAAGT
TAAATGAAGATGAGAACCGAAGCCTACAGCTTCAGTCCGTGGTGTCTATC
GCCGTGCTAGACGGGCCGAGCGAGCAGAAGAAGAAAGAAATTAAAACTTT
CCTCGAGCAAGAGCTCCCAGAGATCCAGAAAAATGTGGCGGTACGCGCAC
GGATGCTGTGGTTCAAGCAGAAGGAGTACGAAGATAAGCTGGTAAAGACG
CGGAATAAACTGATGGAGGTAAATGGTTTGATTGCTGATATGGAGCCTGG
TCTTCCGCCCATGAGCTTGACCCCAGAGACGGGAATAACTCTTCTTCCAA
GCATGTAA

Synonyms

Publications