jgi.p|Nanoce1779_2|577366, mRNA_455 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577366
Unique NamemRNA_455
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length603
Alignment locationscaffold_3:1117111..1117952 -

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Properties
Property NameValue
TranscriptId577452
TrackFilteredModels2
ProteinId577366
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1117111..1117952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577366gene_455Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577366mRNA_455-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_455CDS_455Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_455 ID=mRNA_455|Name=jgi.p|Nanoce1779_2|577366|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
AGGCCGGCATGCCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGAC
CTCTGGGTTCTGTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGT
AGCTGTCAAGCCCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGG
TGGGCATCCCGGGACCGTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCA
GGCTTCCTTGAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAAT
TTACGTTGTCAGCACCGCCGACGTATATGTGATGGATGCCTTTGCCAGCT
CGCTAGGACCGCTCGCACAAGAGCAACCTCCTCCCATCATCTTCCTTGCC
GACGGCAATCAATCTCTCACCAACGCCTTGGACCTGAAAATGGATGGCAC
AAGTCGAGGAATGGGCCCGCGGATGCAGCGGTTTGCGATGGTAGTGGATG
GGAAAGGTATCGTTCAAGACTTCCAAGTCGATATAAGCGGCCAGATCAAA
TTTTCGCGGGCGGCGAATGTGTTGAGTCGCTTGTAGGAAAGTAGAAAGAT
GCTGGAGTCAAATGAAAGTGTACGAATAGAATAGAATTATAATTGGACAA
GGG
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protein sequence of jgi.p|Nanoce1779_2|577366

>mRNA_455-protein ID=mRNA_455-protein|Name=jgi.p|Nanoce1779_2|577366|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MPPPRQGDTFPNVDLWVLSPATSDNKPREPVAVKPLDIFKGKRRVVVVGI
PGPFTPGCSRSHVPGFLEAAKDLRAKGIDQIYVVSTADVYVMDAFASSLG
PLAQEQPPPIIFLADGNQSLTNALDLKMDGTSRGMGPRMQRFAMVVDGKG
IVQDFQVDISGQIKFSRAANVLSRL*
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mRNA from alignment at scaffold_3:1117111..1117952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_455 ID=mRNA_455|Name=jgi.p|Nanoce1779_2|577366|organism=Nannochloropsis oceanica|type=mRNA|length=842bp|location=Sequence derived from alignment at scaffold_3:1117111..1117952- (Nannochloropsis oceanica)
AGGCCGGCATGCCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGAC
CTCTGGGTTCTGTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGT
AGCTGTCAAGCCCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGG
TGGGCATCCCGGGACCGGTGCGTAGCTGAATTCTTTGACCAGTGTATTGC
AGAATCGGGGAGGGGGAGACTGGCCTGCGGGCTTTGGAGGGCAATCGATA
CCTTGCCCGAGCCATCCTGTTAACCTTTTCTGTTACAATGGTATATTTCA
AACCCTTACAGTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCAGGCTTC
CTTGAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAATTTACGT
TGTCAGCACCGCCGACGGTAGGAGACACAAAAATATTGGAAGTACTGCAT
GTCAGGATAATGTACATCATGAGAGCTCATAATTTCATCTGTCTCTTGTA
TCATCCACCAAGTATATGTGATGGATGCCTTTGCCAGCTCGCTAGGACCG
CTCGCACAAGAGCAACCTCCTCCCATCATCTTCCTTGCCGACGGCAATCA
ATCTCTCACCAACGCCTTGGACCTGAAAATGGATGGCACAAGTCGAGGAA
TGGGCCCGCGGATGCAGCGGTTTGCGATGGTAGTGGATGGGAAAGGTATC
GTTCAAGACTTCCAAGTCGATATAAGCGGCCAGATCAAATTTTCGCGGGC
GGCGAATGTGTTGAGTCGCTTGTAGGAAAGTAGAAAGATGCTGGAGTCAA
ATGAAAGTGTACGAATAGAATAGAATTATAATTGGACAAGGG
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Coding sequence (CDS) from alignment at scaffold_3:1117111..1117952-

>mRNA_455 ID=mRNA_455|Name=jgi.p|Nanoce1779_2|577366|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_3:1117111..1117952- (Nannochloropsis oceanica)
TATATGTGATGGATGCCTTTGCCAGCTCGCTAGGACCGCTCGCACAAGAG
CAACCTCCTCCCATCATCTTCCTTGCCGACGGCAATCAATCTCTCACCAA
CGCCTTGGACCTGAAAATGGATGGCACAAGTCGAGGAATGGGCCCGCGGA
TGCAGCGGTTTGCGATGGTAGTGGATGGGAAAGGTATCGTTCAAGACTTC
CAAGTCGATATAAGCGGCCAGATCAAATTTTCGCGGGCGGCGAATGTGTT
GAGTCGCTTGTAGTTTACCCCCGGCTGCTCCAGGAGCCACGTGCCAGGCT
TCCTTGAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAAATTTAC
GTTGTCAGCACCGCCGACGATGCCTCCACCCCGCCAGGGCGACACATTTC
CCAACGTGGACCTCTGGGTTCTGTCTCCTGCCACATCTGACAACAAGCCC
CGAGAACCTGTAGCTGTCAAGCCCTTGGACATTTTTAAGGGCAAGCGGCG
CGTGGTGGTGGTGGGCATCCCGGGACCGTATATGTGATGGATGCCTTTGC
CAGCTCGCTAGGACCGCTCGCACAAGAGCAACCTCCTCCCATCATCTTCC
TTGCCGACGGCAATCAATCTCTCACCAACGCCTTGGACCTGAAAATGGAT
GGCACAAGTCGAGGAATGGGCCCGCGGATGCAGCGGTTTGCGATGGTAGT
GGATGGGAAAGGTATCGTTCAAGACTTCCAAGTCGATATAAGCGGCCAGA
TCAAATTTTCGCGGGCGGCGAATGTGTTGAGTCGCTTGTAGTTTACCCCC
GGCTGCTCCAGGAGCCACGTGCCAGGCTTCCTTGAAGCTGCCAAAGACCT
GCGCGCAAAAGGGATAGATCAAATTTACGTTGTCAGCACCGCCGACGATG
CCTCCACCCCGCCAGGGCGACACATTTCCCAACGTGGACCTCTGGGTTCT
GTCTCCTGCCACATCTGACAACAAGCCCCGAGAACCTGTAGCTGTCAAGC
CCTTGGACATTTTTAAGGGCAAGCGGCGCGTGGTGGTGGTGGGCATCCCG
GGACCGTATATGTGATGGATGCCTTTGCCAGCTCGCTAGGACCGCTCGCA
CAAGAGCAACCTCCTCCCATCATCTTCCTTGCCGACGGCAATCAATCTCT
CACCAACGCCTTGGACCTGAAAATGGATGGCACAAGTCGAGGAATGGGCC
CGCGGATGCAGCGGTTTGCGATGGTAGTGGATGGGAAAGGTATCGTTCAA
GACTTCCAAGTCGATATAAGCGGCCAGATCAAATTTTCGCGGGCGGCGAA
TGTGTTGAGTCGCTTGTAGTTTACCCCCGGCTGCTCCAGGAGCCACGTGC
CAGGCTTCCTTGAAGCTGCCAAAGACCTGCGCGCAAAAGGGATAGATCAA
ATTTACGTTGTCAGCACCGCCGACGATGCCTCCACCCCGCCAGGGCGACA
CATTTCCCAACGTGGACCTCTGGGTTCTGTCTCCTGCCACATCTGACAAC
AAGCCCCGAGAACCTGTAGCTGTCAAGCCCTTGGACATTTTTAAGGGCAA
GCGGCGCGTGGTGGTGGTGGGCATCCCGGGACCG
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Synonyms
Publications