jgi.p|Nanoce1779_2|605740, mRNA_9229 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605740
Unique NamemRNA_9229
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_33:43717..44418 +

Link to JBrowse

Properties
Property NameValue
TranscriptId605826
TrackFilteredModels2
ProteinId605740
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:43717..44418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605740gene_9229Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605740mRNA_9229-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9229CDS_9229Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9229 ID=mRNA_9229|Name=jgi.p|Nanoce1779_2|605740|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
AGGAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAATGACATGCC
GTCCCTCCCTTCCTCCCGGATGCGGATAGATACGTCCGCGGTTGGAGGAA
AAGTACCGTTGGGAAGCGTTGTGGGAGACTACGCGTGGCAGCAAGAAGAG
GGGCTGGAGAAAATGGTATTCGGATTTGATACATTCGAGGTAGGTAGGTA
GGGAGGGAGTGAGAGAGGGGGGAATGAGAGGGAGGGCTAGGTTTGTATTT
TGTGCTACAATATTTTTTCACCACTTGCTGTCTCTGTGTCCCATCTCTCC
TTCCCTCCCTTCATCTCTCCCTCTTTCCCTCCCTTCGTCCCTCCCTCCTT
CAGCTAGGTCCACTTTCCCTGCCCATGAAGAAGAAGCTCAAGACCTACTC
CTTCTTTTGGGTGGACGACAAGGTAATCCCACCCTCTTTTTTTCTCTTCC
TCCTTCCTTCCCTTTCTTTTTTTCCCCCCTCCACTAGCCCCTCTCATCGA
TACCTCTGTCCCCGCCCACCTTCTCTCCTCCCCTCCCTCCCTCGTTTCTA
CAGATTGCCTGTGCAAGGAGCAGTTCTGGTGGACTCACCCTGATGCGGGC
AAGTGAACTATCCCTGGACCAAAGAAATGCTATAAATAAATAAAAAGTAA
ACCAAGAAATGTAAAGGCGGAGAGGCACTAAGTACCAAAAGTCTTCAAGC
TC
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protein sequence of jgi.p|Nanoce1779_2|605740

>mRNA_9229-protein ID=mRNA_9229-protein|Name=jgi.p|Nanoce1779_2|605740|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MRGRARFVFCATIFFHHLLSLCPISPSLPSSLPLSLPSSLPPSARSTFPA
HEEEAQDLLLLLGGRQGNPTLFFSLPPSFPFFFSPLH*
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mRNA from alignment at scaffold_33:43717..44418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9229 ID=mRNA_9229|Name=jgi.p|Nanoce1779_2|605740|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at scaffold_33:43717..44418+ (Nannochloropsis oceanica)
AGGAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAATGACATGCC
GTCCCTCCCTTCCTCCCGGATGCGGATAGATACGTCCGCGGTTGGAGGAA
AAGTACCGTTGGGAAGCGTTGTGGGAGACTACGCGTGGCAGCAAGAAGAG
GGGCTGGAGAAAATGGTATTCGGATTTGATACATTCGAGGTAGGTAGGTA
GGGAGGGAGTGAGAGAGGGGGGAATGAGAGGGAGGGCTAGGTTTGTATTT
TGTGCTACAATATTTTTTCACCACTTGCTGTCTCTGTGTCCCATCTCTCC
TTCCCTCCCTTCATCTCTCCCTCTTTCCCTCCCTTCGTCCCTCCCTCCTT
CAGCTAGGTCCACTTTCCCTGCCCATGAAGAAGAAGCTCAAGACCTACTC
CTTCTTTTGGGTGGACGACAAGGTAATCCCACCCTCTTTTTTTCTCTTCC
TCCTTCCTTCCCTTTCTTTTTTTCCCCCCTCCACTAGCCCCTCTCATCGA
TACCTCTGTCCCCGCCCACCTTCTCTCCTCCCCTCCCTCCCTCGTTTCTA
CAGATTGCCTGTGCAAGGAGCAGTTCTGGTGGACTCACCCTGATGCGGGC
AAGTGAACTATCCCTGGACCAAAGAAATGCTATAAATAAATAAAAAGTAA
ACCAAGAAATGTAAAGGCGGAGAGGCACTAAGTACCAAAAGTCTTCAAGC
TC
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Coding sequence (CDS) from alignment at scaffold_33:43717..44418+

>mRNA_9229 ID=mRNA_9229|Name=jgi.p|Nanoce1779_2|605740|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_33:43717..44418+ (Nannochloropsis oceanica)
ATGAGAGGGAGGGCTAGGTTTGTATTTTGTGCTACAATATTTTTTCACCA
CTTGCTGTCTCTGTGTCCCATCTCTCCTTCCCTCCCTTCATCTCTCCCTC
TTTCCCTCCCTTCGTCCCTCCCTCCTTCAGCTAGGTCCACTTTCCCTGCC
CATGAAGAAGAAGCTCAAGACCTACTCCTTCTTTTGGGTGGACGACAAGG
TAATCCCACCCTCTTTTTTTCTCTTCCTCCTTCCTTCCCTTTCTTTTTTT
CCCCCCTCCACTAG
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Synonyms
Publications