jgi.p|Nanoce1779_2|606322, mRNA_9306 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606322
Unique NamemRNA_9306
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1379
Alignment locationscaffold_35:35889..37597 -

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Properties
Property NameValue
TranscriptId606408
TrackFilteredModels2
ProteinId606322
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:35889..37597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606322gene_9306Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606322mRNA_9306-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9306CDS_9306Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9306 ID=mRNA_9306|Name=jgi.p|Nanoce1779_2|606322|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp
ACAGGGCTCTCTGGAGACGCCTGCGTCTGCCGTGGTGGAACGCAGGAGGG
TGCAGCAGCCTGCAGAGAAGCAACCTCTCCGCGAAGGACAGACTTGACAC
CTACGCGTCTGAAAGATGGCACCCAATAACGGCATCAAGGTCGGCGACAG
CAACAACAGTCATAGAAGTAACATAGACAGCACCCCGCCCAGCAGCAATA
ATAGCAGCAACAACAATTTGGTTGAGGAACAGGAAGGCTTGTATGTTGAG
GCTCCTCCCTCCCAGCCGATCCTCCCTCCTCCGTCTCTCCGTCGTGGATG
CTGCGGCTGCCCACCGGTGCGGCATGTGAAGCATGCCCCGGCCTTCCAGC
ACGTGCCGCATATCAAGCTTGGATATCGCGTTGGATTTTCCGTCCGAAAT
TGCCTGGTGTCTGTCTTCACCTTCCACAACGAATCCATAAACATCTGGTC
CCATCTATCCGGTACGGTCTATGTGCTCTACGCCCTCTCGTGCTTCCTGC
GCATGGACGGTCTCCACGTCAACATCGACGACTCGGAATACAAAGCGATT
CTAACCTTCCTCCTGTGTGCCGTGGCGTGTTTGAGTTTCAGCACTTGCTA
CCATACATTTGGCTGCATGTCGGAGAACATGTTCAAACTGTTGTTGCGTG
TAGACCTAATCGGCATCGCACTCTTGATCTGGTTTGAAAGGAGGGGAGGG
AGGGAGGGAGGAAGGAAGGAAGGGAGGGAGGCGGGGAGGGATAGATTGAT
GGGGTATGTATTGATGTCAGTGTAAGGGGTTCTAGCTCGGGCATTTTGAG
TCGAAGATTGTTTCATCGCCGCTCTCCTTCCCTCCCTTCCGCCCTACCTC
CCTCCCTTCCGCCCTCCCCCTTCCTCCCTCCTCCATCCCAGGGGCTCCTA
CGTTCCCGGTATCCACTACGCTTTCGCCTGCTTTCCTCGCTGGCAGCGTG
TCTACCACTTTCTGACCCTCCTCCTCCTCCTCCTGGGTTTGGGCGGGGCG
GCGCTCACCGACACGCACTGTCCTCGCCAGTCCCTCGTGCGCACTGGCAC
ATTCGCCCTACTCGTGACCTTCGGCCTCGTCCCTTCCCTCCATTGGTGCA
TGCTCGTGCCTGCCCATGTCCGAGCAATCTTTCTGGATAACTTAATCGGA
ATGTTCTCGTCCTATTCCTTAGGATTTTGCTTGTGGGCCTCCCGTTTCCC
TGAACGATTCTTCCCTCAGACGCCGCTGTTGGGGCTGTGGTTCTCAAGTC
ATCAGCTGTGGCACATGTGTATCTTTATGGCGGTCAAGATCTGGTTGGCG
GGGATCTTGGAGATGCACATGGCCTTGCATGAGATGGGGTGTGAGCTGTT
GAGCTAGAGAGGGTGCGGAGTGAGGCAGG
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protein sequence of jgi.p|Nanoce1779_2|606322

>mRNA_9306-protein ID=mRNA_9306-protein|Name=jgi.p|Nanoce1779_2|606322|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MAPNNGIKVGDSNNSHRSNIDSTPPSSNNSSNNNLVEEQEGLYVEAPPSQ
PILPPPSLRRGCCGCPPVRHVKHAPAFQHVPHIKLGYRVGFSVRNCLVSV
FTFHNESINIWSHLSGTVYVLYALSCFLRMDGLHVNIDDSEYKAILTFLL
CAVACLSFSTCYHTFGCMSENMFKLLLRVDLIGIALLIWFERRGGREGGR
KEGREAGRDRLMGYVLMSV*
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mRNA from alignment at scaffold_35:35889..37597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9306 ID=mRNA_9306|Name=jgi.p|Nanoce1779_2|606322|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp|location=Sequence derived from alignment at scaffold_35:35889..37597- (Nannochloropsis oceanica)
ACAGGGCTCTCTGGAGACGCCTGCGTCTGCCGTGGTGGAACGCAGGAGGG TGCAGCAGCCTGCAGAGAAGCAACCTCTCCGCGAAGGACAGACTTGACAC CTACGCGTCTGAAAGATGGCACCCAATAACGGCATCAAGGTCGGCGACAG CAACAACAGTCATAGAAGTAACATAGACAGCACCCCGCCCAGCAGCAATA ATAGCAGCAACAACAATTTGGTTGAGGAACAGGAAGGCTTGTATGTTGAG GCTCCTCCCTCCCAGCCGATCCTCCCTCCTCCGTCTCTCCGTCGTGGATG CTGCGGCTGCCCACCGGTGCGGCATGTGAAGCATGCCCCGGCCTTCCAGC ACGTGCCGCATATCAAGCTTGGATATCGCGTTGGATTTTCCGTCCGAAAT TGCCTGGTGGTGAGCAAGGGGGGACGGGTGAAGGGGGAGGATGGGGTCAG ACACACATCAATTTGTAGTGTTGTGCTATTGTATGACTGTGATTACCTAT CACATACGAATGGAAGAAAATGAGACAAGGGGCTTACCAATTCACAATCT GTCCCTTTTTCTTCTCCCTTCCTCCGTCATTCCGGCAGTCTGTCTTCACC TTCCACAACGAATCCATAAACATCTGGTCCCATCTATCCGGTACGGTCTA TGTGCTCTACGCCCTCTCGTGCTTCCTGCGCATGGACGGTCTCCACGTCA ACATCGACGACTCGGAATACAAAGCGATTCTAACCTTCCTCCTGTGTGCC GTGGCGTGTTTGAGTTTCAGCACTTGCTACCATACATTTGGCTGCATGTC GGTATGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTATCTCGTC CCCTCTTCCCATCTAAGATCATTTTACGTATTCTCCTGCCCATGCTTCTG TCATCTTATTCCATCCCTTGCTCCATTCCTCCATACCTTGCTCCTTCTTC AGGAGAACATGTTCAAACTGTTGTTGCGTGTAGACCTAATCGGCATCGCA CTCTTGATCTGGTTTGAAAGGAGGGGAGGGAGGGAGGGAGGAAGGAAGGA AGGGAGGGAGGCGGGGAGGGATAGATTGATGGGGTATGTATTGATGTCAG TGTAAGGGGTTCTAGCTCGGGCATTTTGAGTCGAAGATTGTTTCATCGCC GCTCTCCTTCCCTCCCTTCCGCCCTACCTCCCTCCCTTCCGCCCTCCCCC TTCCTCCCTCCTCCATCCCAGGGGCTCCTACGTTCCCGGTATCCACTACG CTTTCGCCTGCTTTCCTCGCTGGCAGCGTGTCTACCACTTTCTGACCCTC CTCCTCCTCCTCCTGGGTTTGGGCGGGGCGGCGCTCACCGACACGCACTG TCCTCGCCAGTCCCTCGTGCGCACTGGCACATTCGCCCTACTCGTGACCT TCGGCCTCGTCCCTTCCCTCCATTGGTGCATGCTCGTGCCTGCCCATGTC CGAGCAATCTTTCTGGATAACTTAATCGGAATGTTCTCGTCCTATTCCTT AGGATTTTGCTTGTGGGCCTCCCGTTTCCCTGAACGATTCTTCCCTCAGA CGCCGCTGTTGGGGCTGTGGTTCTCAAGTCATCAGCTGTGGCACATGTGT ATCTTTATGGCGGTCAAGATCTGGTTGGCGGGGATCTTGGAGATGCACAT GGCCTTGCATGAGATGGGGTGTGAGCTGTTGAGCTAGAGAGGGTGCGGAG TGAGGCAGG
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Coding sequence (CDS) from alignment at scaffold_35:35889..37597-

>mRNA_9306 ID=mRNA_9306|Name=jgi.p|Nanoce1779_2|606322|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_35:35889..37597- (Nannochloropsis oceanica)
GAGAACATGTTCAAACTGTTGTTGCGTGTAGACCTAATCGGCATCGCACT
CTTGATCTGGTTTGAAAGGAGGGGAGGGAGGGAGGGAGGAAGGAAGGAAG
GGAGGGAGGCGGGGAGGGATAGATTGATGGGGTATGTATTGATGTCAGTG
TAATCTGTCTTCACCTTCCACAACGAATCCATAAACATCTGGTCCCATCT
ATCCGGTACGGTCTATGTGCTCTACGCCCTCTCGTGCTTCCTGCGCATGG
ACGGTCTCCACGTCAACATCGACGACTCGGAATACAAAGCGATTCTAACC
TTCCTCCTGTGTGCCGTGGCGTGTTTGAGTTTCAGCACTTGCTACCATAC
ATTTGGCTGCATGTCGATGGCACCCAATAACGGCATCAAGGTCGGCGACA
GCAACAACAGTCATAGAAGTAACATAGACAGCACCCCGCCCAGCAGCAAT
AATAGCAGCAACAACAATTTGGTTGAGGAACAGGAAGGCTTGTATGTTGA
GGCTCCTCCCTCCCAGCCGATCCTCCCTCCTCCGTCTCTCCGTCGTGGAT
GCTGCGGCTGCCCACCGGTGCGGCATGTGAAGCATGCCCCGGCCTTCCAG
CACGTGCCGCATATCAAGCTTGGATATCGCGTTGGATTTTCCGTCCGAAA
TTGCCTGGTGGAGAACATGTTCAAACTGTTGTTGCGTGTAGACCTAATCG
GCATCGCACTCTTGATCTGGTTTGAAAGGAGGGGAGGGAGGGAGGGAGGA
AGGAAGGAAGGGAGGGAGGCGGGGAGGGATAGATTGATGGGGTATGTATT
GATGTCAGTGTAATCTGTCTTCACCTTCCACAACGAATCCATAAACATCT
GGTCCCATCTATCCGGTACGGTCTATGTGCTCTACGCCCTCTCGTGCTTC
CTGCGCATGGACGGTCTCCACGTCAACATCGACGACTCGGAATACAAAGC
GATTCTAACCTTCCTCCTGTGTGCCGTGGCGTGTTTGAGTTTCAGCACTT
GCTACCATACATTTGGCTGCATGTCGATGGCACCCAATAACGGCATCAAG
GTCGGCGACAGCAACAACAGTCATAGAAGTAACATAGACAGCACCCCGCC
CAGCAGCAATAATAGCAGCAACAACAATTTGGTTGAGGAACAGGAAGGCT
TGTATGTTGAGGCTCCTCCCTCCCAGCCGATCCTCCCTCCTCCGTCTCTC
CGTCGTGGATGCTGCGGCTGCCCACCGGTGCGGCATGTGAAGCATGCCCC
GGCCTTCCAGCACGTGCCGCATATCAAGCTTGGATATCGCGTTGGATTTT
CCGTCCGAAATTGCCTGGTGGAGAACATGTTCAAACTGTTGTTGCGTGTA
GACCTAATCGGCATCGCACTCTTGATCTGGTTTGAAAGGAGGGGAGGGAG
GGAGGGAGGAAGGAAGGAAGGGAGGGAGGCGGGGAGGGATAGATTGATGG
GGTATGTATTGATGTCAGTGTAATCTGTCTTCACCTTCCACAACGAATCC
ATAAACATCTGGTCCCATCTATCCGGTACGGTCTATGTGCTCTACGCCCT
CTCGTGCTTCCTGCGCATGGACGGTCTCCACGTCAACATCGACGACTCGG
AATACAAAGCGATTCTAACCTTCCTCCTGTGTGCCGTGGCGTGTTTGAGT
TTCAGCACTTGCTACCATACATTTGGCTGCATGTCGATGGCACCCAATAA
CGGCATCAAGGTCGGCGACAGCAACAACAGTCATAGAAGTAACATAGACA
GCACCCCGCCCAGCAGCAATAATAGCAGCAACAACAATTTGGTTGAGGAA
CAGGAAGGCTTGTATGTTGAGGCTCCTCCCTCCCAGCCGATCCTCCCTCC
TCCGTCTCTCCGTCGTGGATGCTGCGGCTGCCCACCGGTGCGGCATGTGA
AGCATGCCCCGGCCTTCCAGCACGTGCCGCATATCAAGCTTGGATATCGC
GTTGGATTTTCCGTCCGAAATTGCCTGGTG
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Synonyms
Publications