jgi.p|Nanoce1779_2|538222, mRNA_2098 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|538222
Unique NamemRNA_2098
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1342
Alignment locationscaffold_4:809530..811114 -

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Properties
Property NameValue
TranscriptId538308
TrackFilteredModels2
ProteinId538222
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:809530..811114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538222gene_2098Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538222mRNA_2098-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2098CDS_2098Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2098 ID=mRNA_2098|Name=jgi.p|Nanoce1779_2|538222|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp
ACAGCTTCCCTGCCACTTCACACCTCCCGCACCTGCAACGCGACGGAAAC
ACCACGTCGTTTTCCCCGAGCGACGCAATCGATTTCTATTTTGCCTTACT
TCTGCAATTCAATGGGTCAAAGCGAGCCGTGAAAGGCAGCCAAGAGATGC
GTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTCGTCTG
CCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTCAAATG
TTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCGGGGGG
CTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTATGGTGC
CGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGTCCGCT
TCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAAGGGTA
GAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCGAATAC
TGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAAATCAA
TATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAAGCTCA
TGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCCGCAAA
AAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGTTTTGA
CCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGTGATAA
ACAATTGGTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCCAAGC
GCACGGCAGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCCGACG
CTGGAAAGTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAGCTGC
GGGTGATGGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGACTCG
GCGGATTCTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGTCGGC
GGGTCCTCGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTAGTGA
GCCTAGCTTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAAAGAG
ATTTACCTGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAGACTG
GCGGTCAAAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGATTAGG
CCTAGGCAAGGGAGGCAGGAGTGCAGGAGTCTGGGGATATACAGTCCAGC
TCACAAGAACGTAGTTGTAGAAAAATATGGCAATGTATCATATCAATCAT
AGAATAGAAGCAATGAGACGGTCGCTAATGAGAAGTGTTAAG
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protein sequence of jgi.p|Nanoce1779_2|538222

>mRNA_2098-protein ID=mRNA_2098-protein|Name=jgi.p|Nanoce1779_2|538222|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MRWQHYSGDRQRVPLLRLPLTVLLLTLLGLCPLKCFAAAATSRSRIGDYR
GASLAFTPVFTASVNVWCRSIQRSSQLAVCSTCPLLACNSRDGVVRYGTK
GRKKHRTSRCRKSDDGEYCEDSDECEAPRVSSQINIPVRRQIAFVKQMKK
LMKAEERPKEVAKKVRRKKDSAQREAISGDYARFDQTMCSTYLLVDGYNV
INNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAE
LRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQV
VSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKAFDDAQEYFID
*
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mRNA from alignment at scaffold_4:809530..811114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2098 ID=mRNA_2098|Name=jgi.p|Nanoce1779_2|538222|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at scaffold_4:809530..811114- (Nannochloropsis oceanica)
ACAGCTTCCCTGCCACTTCACACCTCCCGCACCTGCAACGCGACGGAAAC
ACCACGTCGTTTTCCCCGAGCGACGCAATCGATTTCTATTTTGCCTTACT
TCTGCAATTCAATGGGTCAAAGCGAGCCGTGAAAGGCAGCCAAGAGATGC
GTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTCGTCTG
CCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTCAAATG
TTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCGGGGGG
CTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTATGGTGC
CGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGTCCGCT
TCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAAGGGTA
GAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCGAATAC
TGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAAATCAA
TATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAAGCTCA
TGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCCGCAAA
AAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGTTTTGA
CCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGTGATAA
AGTAAGTTTTTCTCCGATTAGATAAATATGCTTGTCTGGAGGACCTCTGC
GCATGTATGTATACCCCCGTCAGTGTGTGTCTGGCCTTGATTATCATAAC
TTGTCAATGTTTCAATGGCCTTTTGTTGAAAGTATGAGGTAAGTGGGTGT
TTCATCTTGGCGTGTATTTTTTTTCACGTAATATATTTCCTCGGATCGGT
CTTTCACTCATTCTTGTTTCTCTCCGATTATATCATATACACAGCAATTG
GTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCCAAGCGCACGGC
AGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCCGACGCTGGAAA
GTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAGCTGCGGGTGAT
GGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGACTCGGCGGATT
CTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGTCGGCGGGTCCT
CGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTAGTGAGCCTAGC
TTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAAAGAGATTTACC
TGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAGACTGGCGGTCA
AAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGATTAGGCCTAGGC
AAGGGAGGCAGGAGTGCAGGAGTCTGGGGATATACAGTCCAGCTCACAAG
AACGTAGTTGTAGAAAAATATGGCAATGTATCATATCAATCATAGAATAG
AAGCAATGAGACGGTCGCTAATGAGAAGTGTTAAG
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Coding sequence (CDS) from alignment at scaffold_4:809530..811114-

>mRNA_2098 ID=mRNA_2098|Name=jgi.p|Nanoce1779_2|538222|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_4:809530..811114- (Nannochloropsis oceanica)
CAATTGGTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCCAAGCG
CACGGCAGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCCGACGC
TGGAAAGTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAGCTGCG
GGTGATGGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGACTCGG
CGGATTCTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGTCGGCG
GGTCCTCGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTAGTGAG
CCTAGCTTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAAAGAGA
TTTACCTGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAGACTGG
CGGTCAAAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGATTAGAT
GCGTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTCGTC
TGCCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTCAAA
TGTTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCGGGG
GGCTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTATGGT
GCCGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGTCCG
CTTCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAAGGG
TAGAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCGAAT
ACTGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAAATC
AATATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAAGCT
CATGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCCGCA
AAAAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGTTTT
GACCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGTGAT
AAACAATTGGTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCCAA
GCGCACGGCAGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCCGA
CGCTGGAAAGTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAGCT
GCGGGTGATGGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGACT
CGGCGGATTCTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGTCG
GCGGGTCCTCGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTAGT
GAGCCTAGCTTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAAAG
AGATTTACCTGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAGAC
TGGCGGTCAAAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGATTA
GATGCGTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTC
GTCTGCCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTC
AAATGTTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCG
GGGGGCTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTAT
GGTGCCGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGT
CCGCTTCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAA
GGGTAGAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCG
AATACTGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAA
ATCAATATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAA
GCTCATGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCC
GCAAAAAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGT
TTTGACCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGT
GATAAA
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Synonyms
Publications