jgi.p|Nanoce1779_2|287513, mRNA_1877 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|287513
Unique Name	mRNA_1877
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	967
Alignment location	scaffold_4:246029..248218 -

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Properties


Property Name	Value
TranscriptId	287599
Track	FilteredModels2
ProteinId	287513

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:246029..248218 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|287513	gene_1877	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|287513	mRNA_1877-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1877	CDS_1877	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:246029..248218-
coding sequence from alignment at scaffold_4:246029..248218-

mRNA sequence

>mRNA_1877 ID=mRNA_1877|Name=jgi.p|Nanoce1779_2|287513|organism=Nannochloropsis oceanica|type=mRNA|length=967bp
GTACCCACGCACAATTTGTCCCGTCCACAATATCCCCCCCTCCCTTCCTT
CCTCCCTCCCTTCCTCAGAAAGGACGCCATCCTGAAGCTGATGGAGGCCG
TGGACGAGACCATTCCTACCCCTCCCCGTGACTTGGACAAGCCGTTTTTG
ATGCCCGTGGAGGACGTTTTTTCGATCGCGGGGCGAGGAACAGTGGTGAC
GGGAAGGGTGGAGCAGGGCAAGATCAAGACAGGGGAGGAGGTGGAAATCG
TCGGTCTAACGGCTGCGCCCACCAAGACAACCGTTACAGGCGTTGAAATG
TTCAAAAAGACGTTAGACTACGGCGGGGCCGGGGACAACGTCGGCTGCCT
CCTCCGAACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGTGCTGGCGG
CCCCGGGCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGTTGTATGTC
CTGACGCAGGAGGAAGGAGGGCGACACACGCCCTTTCTGGATAACTATCG
ACCGCAGTTCTACATCCGGACGTCGGACGTAACGGGCTCCATTACGTTGG
GGGAAGGGAAAGAGATGGCAATGCCCGGGGACAACACCACGGTCAAGGTG
TCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCTCCGATTTGCTGTCCG
GGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGGCCAAGTTAATCAAGT
AAAGCGATTGGGAAAGAACAAAGTGATTAGATGGGAGGGGACAACGATTT
TGCGAGGTGGTGGGAGGAGTGAGTATAGGAGGGGGCAGAACTAGGTTGGA
ATGTCGGTCCGGGTGCATGTGCAAAGAGCAGCGAACGTATTTCCATGCGG
CAGACACACGAAATCCAAAGCATCCACGGCGAAGAGTGACTAATCACGAC
ACGTCGAGGCTCTTTGAATCCCCCCTCCCTCGTCTATTCCGAATAGCATG
GCGAAGGAAGGCCTGCA

protein sequence of jgi.p|Nanoce1779_2|287513

>mRNA_1877-protein ID=mRNA_1877-protein|Name=jgi.p|Nanoce1779_2|287513|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEE
VEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQ
VLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGS
ITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAK
LIK*

mRNA from alignment at scaffold_4:246029..248218-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1877 ID=mRNA_1877|Name=jgi.p|Nanoce1779_2|287513|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at scaffold_4:246029..248218- (Nannochloropsis oceanica)
GTACCCACGCACAATTTGTCCCGTCCACAATATCCCCCCCTCCCTTCCTT
CCTCCCTCCCTTCCTCAGAAAGGACGCCATCCTGAAGCTGATGGAGGCCG
TGGACGAGACCATTCCTACCCCTCCCCGTGACTTGGACAAGCCGTTTTTG
ATGCCCGTGGAGGACGTTTTTTCGATCGCGGGGCGAGGAACAGTGGTGAC
GGGAAGGGTGGAGCAGGTGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGG
GAGGGACCTGTGACGGGAAGGATGGAGCAGGTGACGAGGGAAGGAGGGAA
GGAGGGAAGGAGGGAGGGAGGGCGGGTAGGCAGTTATGTCTTAGACGACA
GTGAGTTGACATTCTGTTTCTCACCACTTTCCTCGTTCCATCCCTCCCTC
CTTCCCTCCTTCTTCCCTCCCTCCTTCAACAGGGCAAGATCAAGACAGGG
GAGGAGGTGGAAATCGTCGGTCTAACGGCTGCGCCCACCAAGACAACCGT
TACAGGTAGGGGAGGAGGGAGGGAGGGACGGAGAAAGGGAAGGAGGGAGG
GAGGGAGGAAGGGGGGAAGAAGTCGGAGGGAGACAACGATGAGGGGGAGG
GAGGGGAGGAGGGTGTGTATAGAAGGACGTGCATCCCACAACTTGGGGGT
GGCACCAATCGATGGTTTGCCATCCTTGATAAGCTGCGGAAAGAACGATC
ACCCTCGCTTCCTCCCGCGCTCCCTCCCTCCTCCTTCCTTTTGTTTAGAT
GAAGGAGGGAGGGAGGGAGGGAGGGGGGGGGGAGGGAGGGTGGCTTAGAC
CCTGTTTTACGTGCGGTTGTTTTCCCAATTTCTATGAGATCCAACTGCCC
CGTGACAGGGGGACATACCCATGATTGATTGCCCCCTCTCCCTCCCTTCC
CCCGTCCCTCTCCCCCTCCTTTCCTGCGTCCCTCCCAGCTCTTGTCTCTT
CTCTGGGTCACTCAGTGGCAGGCGCAAAGTGTCATCTCTCGTCGACTTCA
CCCCTCCCTCCCGCTTTCCCCCCTCACCCTCCCTTGCTTTTTCTCAGGCG
TTGAAATGTTCAAAAAGACGTTAGACTACGGCGGGGCCGGGGACAACGTC
GGCTGCCTCCTCCGAACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGT
GCTGGCGGCCCCGGGCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGT
TGTATGTCCTGACGCAGGAGGAAGGTAGGTTAGGGCCCATGCCCTCTTGC
ACTTTTGGCTGTATGGCTGTATTGCTGTACTATTGTATACAAGTCTTGAC
CAAACCGTTTCTCGCCAACGGCAGGTCCCTGTTCGTTTCCGGGTATTTCT
CTTCCTGCCTTTCCTCTTCGTGTGCTTACCCTTGTTTTCACTCCTTTATT
TTCTCATTCCTCCCTCCCTGCCTGCCTGCCTGCCTGTGTTCCTTCCTCCT
TGTGTCCCAGACGGTCTTCTTCGTCTCCACATTTCTCATCCATCCATGCA
TTCACCCCCTCCCCTCCCTCCCCTCCTTCCCCCGTCCCTGCAGGAGGGCG
ACACACGCCCTTTCTGGATAACTATCGACCGCAGTTCTACATCCGGACGT
CGGACGTAACGGGCTCCATTACGTTGGGGGAAGGGAAAGAGATGGCAATG
CCCGGGGACAACACCACGGTCAAGGTACGGGGGAGGGAGGGACGGATGGA
GGGAGGACACAAAAGACTTCCAGCCTTAGGAAATGGTAGAATCGTATAGG
TAGGCTTATGTTTTCATCTTTTTTCCTTCCGCCCTCCCTCTCTCCCTCCC
TCCCTCCCTCCCTCCCTCAGGTGTCGCTCATCTACCCCACAGTGTTGAGC
GAGGGGCTCCGATTTGCTGTCCGGGAAGGAGGCCGCACAGTCGCCGCAGG
AGTAGTGGCCAAGTTAATCAAGTAAAGCGATTGGGAAAGAACAAAGTGAT
TAGATGGGAGGGGACAACGATTTTGCGAGGTGGTGGGAGGAGTGAGTATA
GGAGGGGGCAGAACTAGGTTGGAATGTCGGTCCGGGTGCATGTGCAAAGA
GCAGCGAACGTATTTCCATGCGGCAGACACACGAAATCCAAAGCATCCAC
GGCGAAGAGTGACTAATCACGACACGTCGAGGCTCTTTGAATCCCCCCTC
CCTCGTCTATTCCGAATAGCATGGCGAAGGAAGGCCTGCA

Coding sequence (CDS) from alignment at scaffold_4:246029..248218-

>mRNA_1877 ID=mRNA_1877|Name=jgi.p|Nanoce1779_2|287513|organism=Nannochloropsis oceanica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_4:246029..248218- (Nannochloropsis oceanica)
GTGTCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCTCCGATTTGCTGT
CCGGGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGGCCAAGTTAATCA
AGTAAGAGGGCGACACACGCCCTTTCTGGATAACTATCGACCGCAGTTCT
ACATCCGGACGTCGGACGTAACGGGCTCCATTACGTTGGGGGAAGGGAAA
GAGATGGCAATGCCCGGGGACAACACCACGGTCAAGGCGTTGAAATGTTC
AAAAAGACGTTAGACTACGGCGGGGCCGGGGACAACGTCGGCTGCCTCCT
CCGAACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGTGCTGGCGGCCC
CGGGCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGTTGTATGTCCTG
ACGCAGGAGGAAGGGCAAGATCAAGACAGGGGAGGAGGTGGAAATCGTCG
GTCTAACGGCTGCGCCCACCAAGACAACCGTTACAGATGGAGGCCGTGGA
CGAGACCATTCCTACCCCTCCCCGTGACTTGGACAAGCCGTTTTTGATGC
CCGTGGAGGACGTTTTTTCGATCGCGGGGCGAGGAACAGTGGTGACGGGA
AGGGTGGAGCAGGTGTCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCT
CCGATTTGCTGTCCGGGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGG
CCAAGTTAATCAAGTAAGAGGGCGACACACGCCCTTTCTGGATAACTATC
GACCGCAGTTCTACATCCGGACGTCGGACGTAACGGGCTCCATTACGTTG
GGGGAAGGGAAAGAGATGGCAATGCCCGGGGACAACACCACGGTCAAGGC
GTTGAAATGTTCAAAAAGACGTTAGACTACGGCGGGGCCGGGGACAACGT
CGGCTGCCTCCTCCGAACCGTCAAGAGGGATGACGTCCAACGAGGGCAGG
TGCTGGCGGCCCCGGGCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAG
TTGTATGTCCTGACGCAGGAGGAAGGGCAAGATCAAGACAGGGGAGGAGG
TGGAAATCGTCGGTCTAACGGCTGCGCCCACCAAGACAACCGTTACAGAT
GGAGGCCGTGGACGAGACCATTCCTACCCCTCCCCGTGACTTGGACAAGC
CGTTTTTGATGCCCGTGGAGGACGTTTTTTCGATCGCGGGGCGAGGAACA
GTGGTGACGGGAAGGGTGGAGCAGGTGTCGCTCATCTACCCCACAGTGTT
GAGCGAGGGGCTCCGATTTGCTGTCCGGGAAGGAGGCCGCACAGTCGCCG
CAGGAGTAGTGGCCAAGTTAATCAAGTAAGAGGGCGACACACGCCCTTTC
TGGATAACTATCGACCGCAGTTCTACATCCGGACGTCGGACGTAACGGGC
TCCATTACGTTGGGGGAAGGGAAAGAGATGGCAATGCCCGGGGACAACAC
CACGGTCAAGGCGTTGAAATGTTCAAAAAGACGTTAGACTACGGCGGGGC
CGGGGACAACGTCGGCTGCCTCCTCCGAACCGTCAAGAGGGATGACGTCC
AACGAGGGCAGGTGCTGGCGGCCCCGGGCTCAGTGAAGACCTACAAGGAG
TTCGAGGCGGAGTTGTATGTCCTGACGCAGGAGGAAGGGCAAGATCAAGA
CAGGGGAGGAGGTGGAAATCGTCGGTCTAACGGCTGCGCCCACCAAGACA
ACCGTTACAGATGGAGGCCGTGGACGAGACCATTCCTACCCCTCCCCGTG
ACTTGGACAAGCCGTTTTTGATGCCCGTGGAGGACGTTTTTTCGATCGCG
GGGCGAGGAACAGTGGTGACGGGAAGGGTGGAGCAGGTGTCGCTCATCTA
CCCCACAGTGTTGAGCGAGGGGCTCCGATTTGCTGTCCGGGAAGGAGGCC
GCACAGTCGCCGCAGGAGTAGTGGCCAAGTTAATCAAGTAAGAGGGCGAC
ACACGCCCTTTCTGGATAACTATCGACCGCAGTTCTACATCCGGACGTCG
GACGTAACGGGCTCCATTACGTTGGGGGAAGGGAAAGAGATGGCAATGCC
CGGGGACAACACCACGGTCAAGGCGTTGAAATGTTCAAAAAGACGTTAGA
CTACGGCGGGGCCGGGGACAACGTCGGCTGCCTCCTCCGAACCGTCAAGA
GGGATGACGTCCAACGAGGGCAGGTGCTGGCGGCCCCGGGCTCAGTGAAG
ACCTACAAGGAGTTCGAGGCGGAGTTGTATGTCCTGACGCAGGAGGAAGG
GCAAGATCAAGACAGGGGAGGAGGTGGAAATCGTCGGTCTAACGGCTGCG
CCCACCAAGACAACCGTTACAGATGGAGGCCGTGGACGAGACCATTCCTA
CCCCTCCCCGTGACTTGGACAAGCCGTTTTTGATGCCCGTGGAGGACGTT
TTTTCGATCGCGGGGCGAGGAACAGTGGTGACGGGAAGGGTGGAGCAGGT
GTCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCTCCGATTTGCTGTCC
GGGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGGCCAAGTTAATCAAG
TAAGAGGGCGACACACGCCCTTTCTGGATAACTATCGACCGCAGTTCTAC
ATCCGGACGTCGGACGTAACGGGCTCCATTACGTTGGGGGAAGGGAAAGA
GATGGCAATGCCCGGGGACAACACCACGGTCAAGGCGTTGAAATGTTCAA
AAAGACGTTAGACTACGGCGGGGCCGGGGACAACGTCGGCTGCCTCCTCC
GAACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGTGCTGGCGGCCCCG
GGCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGTTGTATGTCCTGAC
GCAGGAGGAAGGGCAAGATCAAGACAGGGGAGGAGGTGGAAATCGTCGGT
CTAACGGCTGCGCCCACCAAGACAACCGTTACAGATGGAGGCCGTGGACG
AGACCATTCCTACCCCTCCCCGTGACTTGGACAAGCCGTTTTTGATGCCC
GTGGAGGACGTTTTTTCGATCGCGGGGCGAGGAACAGTGGTGACGGGAAG
GGTGGAGCAG

Synonyms

Publications