jgi.p|Nanoce1779_2|292230, mRNA_2051 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|292230
Unique NamemRNA_2051
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1597
Alignment locationscaffold_4:646584..648498 +

Link to JBrowse

Properties
Property NameValue
TranscriptId292316
TrackFilteredModels2
ProteinId292230
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:646584..648498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|292230gene_2051Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|292230mRNA_2051-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2051CDS_2051Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2051 ID=mRNA_2051|Name=jgi.p|Nanoce1779_2|292230|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
TTTGGGATGGGGCGTGTGGGGCGTATGGGACTCACCTGCGAGGCCTTGAT
TTTGCTTCTTTGGGAGGCGGGAGCTTGACCCCACGATTCGGTATGTCTTC
AATGCCTGAGAGCACCAGGCGTAATTGCCGTTCCAACGAGGCAGCCAGAA
CTGAGAGATCGCCTGCTGAGGCTCTCTCGCCTCGATTTCATGCGCCGACG
GCCTCCTCGCTAGGGCAGTCATGGCTGCATGAATAGCTCATTGAAATTTT
CAGGGCTTTTTTCGAACCACATGGCATGTGTGGCAAAAGAATGCCTTGAA
GCCGCCAACAGGCGCCTGCGACGGAGCGTATGATTCAGCGACGATGCCGA
GCCAAAACCCATGCATGTTGCAGTGCGCTTTCCAGTCCTCCACCCGCGAG
AGGATTTTCAGCGCATTGAGGTCCGGTTGCCATGCTCAAGCGCAGTCTCG
CCTTTGCCCTGGTTGGCGTCAGCGTTGCCAATGCCTTCTTTATGGCTCCG
GCTCCCCGCGCGTCCGCCACGACCATGTTGGCTGGCAAAGCCACGCTCGA
CACGCTTGACCGTGTGGTCCTCACAGACGACGCCACGGGGCATTCCGCCA
CGGTTCATCTCCACGGCGGCTGTATCACCAGCTACAAGGCCCCTCACGAG
GTACTGGGCATTCGAGCGGACGCCGTCTTCACCGGGGCTAAGCCCATTGC
CGGTGGCCTGCAAATTTGCTGGCCTCAGTTTGGTCCCGGTGCCATCCAGC
AACACGGATTCGCCCGCAACCTGCCCTGGGAGGTGTCCGCACAGTCTATG
ACCGAGCCCGAGGTGACATTGGTTTTGAAAGAATCGGCGGAATCTCGCAA
GATTTGGGACCAGGCCTTCGAGCTTTATTTGACCGTCCGTCTGGAGGGCG
ACCACATGCTGACTCGGTTGACGGCCAAGAACACGGGGAAGACTCCATGG
GATTTCACGAGCGCGTTGCACAGTTACTATAGCGTGTCGGATATAAGCAA
AACAACAATTATTGGCACTAGTTTGTCAGGAAAAACTTTTGTAGACAAGA
CCCAGGACCCCTTTGTGTCTGCGCCGTTGCCGGCATCGGAAATGGGAATA
ACGAAGTTTTTGGAAGGTGTCATTCCGGACTTTAAAGGCCCCATGGCGCT
GCATGACAAGGCGCGGCGAGTCCGCACGACGGTGGAGCATGTGAAGGGAT
GGAATGATTATATTTTGTGGGCCCCGGTGGGGAATGATGGCATGGGGTAC
AAGAGCTTTGTGTGCGTAGAAAGCGGGGCAGTCTCCAAGCCGGTTACGGT
CGAGGGTGGGTCGGAGTGGGTGGGGGAGATGAAGATTAGTTCCAGGGCGG
GCTGAATGCAGCCGGAACAGGAGTTGATTGAGGGAAAGATATTGGTCTAG
GAGTGGAGAGAGGACTGACGCTGATACTGGTGGGAGTTTTTTTGCTGTAG
GACCATGCCTCAGTATAGTAAAAAGGGAAAAAGAGGTGGACCTCGCTTTT
CATCATGCAACCTGTTTTGCTTCCAACATCTGCAAGTCAAGTAGGAGCAC
AGGGTAAAAACGAGGACAACAAAAACGTGATAATCCGAGATCATTCA
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protein sequence of jgi.p|Nanoce1779_2|292230

>mRNA_2051-protein ID=mRNA_2051-protein|Name=jgi.p|Nanoce1779_2|292230|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MLKRSLAFALVGVSVANAFFMAPAPRASATTMLAGKATLDTLDRVVLTDD
ATGHSATVHLHGGCITSYKAPHEVLGIRADAVFTGAKPIAGGLQICWPQF
GPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYL
TVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSG
KTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDFKGPMALHDKARRVRTT
VEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEM
KISSRAG*
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mRNA from alignment at scaffold_4:646584..648498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2051 ID=mRNA_2051|Name=jgi.p|Nanoce1779_2|292230|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at scaffold_4:646584..648498+ (Nannochloropsis oceanica)
TTTGGGATGGGGCGTGTGGGGCGTATGGGACTCACCTGCGAGGCCTTGAT
TTTGCTTCTTTGGGAGGCGGGAGCTTGACCCCACGATTCGGTATGTCTTC
AATGCCTGAGAGCACCAGGCGTAATTGCCGTTCCAACGAGGCAGCCAGAA
CTGAGAGATCGCCTGCTGAGGCTCTCTCGCCTCGATTTCATGCGCCGACG
GCCTCCTCGCTAGGGCAGTCATGGCTGCATGAATAGCTCATTGAAATTTT
CAGGGCTTTTTTCGAACCACATGGCATGTGTGGCAAAAGAATGCCTTGAA
GCCGCCAACAGGCGCCTGCGACGGAGCGTATGATTCAGCGACGATGCCGA
GCCAAAACCCATGCATGTTGCAGTGCGCTTTCCAGTCCTCCACCCGCGAG
AGGATTTTCAGCGCATTGAGTCAGTCATTCATGTAACAGATGGTGTTTGT
GTTCATCGAGGGAGTTCGGGTTCTTGCCTGGGGAAGTGCAGGCAGGAGGT
TGTTGGGTACGACAGGGCCAACACTCTTTCATGCCTATTTACTAGCCTGT
CTTCTCCCTCAATACCCAACACAACCACAGGGTCCGGTTGCCATGCTCAA
GCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGCCAATGCCTTCT
TTATGGCTCCGGCTCCCCGCGCGTCCGCCACGACCATGTTGGCTGGCAAA
GCCACGCTCGACACGCTTGACCGTGTGGTCCTCACAGACGACGCCACGGG
GCATTCCGCCACGGTTCATCTCCACGGCGGCTGTATCACCAGCTACAAGG
CCCCTCACGAGGTACTGGGCATTCGAGCGGACGCCGTCTTCACCGGGGCT
AAGCCCATTGCCGGTGGCCTGCAAATTTGCTGGCCTCAGTTTGGTCCCGG
TGCCATCCAGGTACGATTCGATCTCCCTTGTGACGAGATATTAGCTCCCT
CTTTCACCTTTTCAGCCTCATCACACTGGCTCTGCTACTTTGCTCTCCTC
GTCTCTTTCCTGCCCATCTGCTCCACCCTCTCCACACCTATCCCTCCTTC
ACTACCCCAACGCACAGCAACACGGATTCGCCCGCAACCTGCCCTGGGAG
GTGTCCGCACAGTCTATGACCGAGCCCGAGGTGACATTGGTTTTGAAAGA
ATCGGCGGAATCTCGCAAGATTTGGGACCAGGCCTTCGAGCTTTATTTGA
CCGTCCGTCTGGAGGGCGACCACATGCTGACTCGGTTGACGGCCAAGAAC
ACGGGGAAGACTCCATGGGATTTCACGAGCGCGTTGCACAGTTACTATAG
CGTGTCGGATATAAGCAAAACAACAATTATTGGCACTAGTTTGTCAGGAA
AAACTTTTGTAGACAAGACCCAGGACCCCTTTGTGTCTGCGCCGTTGCCG
GCATCGGAAATGGGAATAACGAAGTTTTTGGAAGGTGTCATTCCGGACTT
TAAAGGCCCCATGGCGCTGCATGACAAGGCGCGGCGAGTCCGCACGACGG
TGGAGCATGTGAAGGGATGGAATGATTATATTTTGTGGGCCCCGGTGGGG
AATGATGGCATGGGGTACAAGAGCTTTGTGTGCGTAGAAAGCGGGGCAGT
CTCCAAGCCGGTTACGGTCGAGGGTGGGTCGGAGTGGGTGGGGGAGATGA
AGATTAGTTCCAGGGCGGGCTGAATGCAGCCGGAACAGGAGTTGATTGAG
GGAAAGATATTGGTCTAGGAGTGGAGAGAGGACTGACGCTGATACTGGTG
GGAGTTTTTTTGCTGTAGGACCATGCCTCAGTATAGTAAAAAGGGAAAAA
GAGGTGGACCTCGCTTTTCATCATGCAACCTGTTTTGCTTCCAACATCTG
CAAGTCAAGTAGGAGCACAGGGTAAAAACGAGGACAACAAAAACGTGATA
ATCCGAGATCATTCA
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Coding sequence (CDS) from alignment at scaffold_4:646584..648498+

>mRNA_2051 ID=mRNA_2051|Name=jgi.p|Nanoce1779_2|292230|organism=Nannochloropsis oceanica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_4:646584..648498+ (Nannochloropsis oceanica)
ATGCTCAAGCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGCCAA
TGCCTTCTTTATGGCTCCGGCTCCCCGCGCGTCCGCCACGACCATGTTGG
CTGGCAAAGCCACGCTCGACACGCTTGACCGTGTGGTCCTCACAGACGAC
GCCACGGGGCATTCCGCCACGGTTCATCTCCACGGCGGCTGTATCACCAG
CTACAAGGCCCCTCACGAGGTACTGGGCATTCGAGCGGACGCCGTCTTCA
CCGGGGCTAAGCCCATTGCCGGTGGCCTGCAAATTTGCTGGCCTCAGTTT
GGTCCCGGTGCCATCCAGCAACACGGATTCGCCCGCAACCTGCCCTGGGA
GGTGTCCGCACAGTCTATGACCGAGCCCGAGGTGACATTGGTTTTGAAAG
AATCGGCGGAATCTCGCAAGATTTGGGACCAGGCCTTCGAGCTTTATTTG
ACCGTCCGTCTGGAGGGCGACCACATGCTGACTCGGTTGACGGCCAAGAA
CACGGGGAAGACTCCATGGGATTTCACGAGCGCGTTGCACAGTTACTATA
GCGTGTCGGATATAAGCAAAACAACAATTATTGGCACTAGTTTGTCAGGA
AAAACTTTTGTAGACAAGACCCAGGACCCCTTTGTGTCTGCGCCGTTGCC
GGCATCGGAAATGGGAATAACGAAGTTTTTGGAAGGTGTCATTCCGGACT
TTAAAGGCCCCATGGCGCTGCATGACAAGGCGCGGCGAGTCCGCACGACG
GTGGAGCATGTGAAGGGATGGAATGATTATATTTTGTGGGCCCCGGTGGG
GAATGATGGCATGGGGTACAAGAGCTTTGTGTGCGTAGAAAGCGGGGCAG
TCTCCAAGCCGGTTACGGTCGAGGGTGGGTCGGAGTGGGTGGGGGAGATG
AAGATTAGTTCCAGGGCGGGCTGAATGCTCAAGCGCAGTCTCGCCTTTGC
CCTGGTTGGCGTCAGCGTTGCCAATGCCTTCTTTATGGCTCCGGCTCCCC
GCGCGTCCGCCACGACCATGTTGGCTGGCAAAGCCACGCTCGACACGCTT
GACCGTGTGGTCCTCACAGACGACGCCACGGGGCATTCCGCCACGGTTCA
TCTCCACGGCGGCTGTATCACCAGCTACAAGGCCCCTCACGAGGTACTGG
GCATTCGAGCGGACGCCGTCTTCACCGGGGCTAAGCCCATTGCCGGTGGC
CTGCAAATTTGCTGGCCTCAGTTTGGTCCCGGTGCCATCCAGCAACACGG
ATTCGCCCGCAACCTGCCCTGGGAGGTGTCCGCACAGTCTATGACCGAGC
CCGAGGTGACATTGGTTTTGAAAGAATCGGCGGAATCTCGCAAGATTTGG
GACCAGGCCTTCGAGCTTTATTTGACCGTCCGTCTGGAGGGCGACCACAT
GCTGACTCGGTTGACGGCCAAGAACACGGGGAAGACTCCATGGGATTTCA
CGAGCGCGTTGCACAGTTACTATAGCGTGTCGGATATAAGCAAAACAACA
ATTATTGGCACTAGTTTGTCAGGAAAAACTTTTGTAGACAAGACCCAGGA
CCCCTTTGTGTCTGCGCCGTTGCCGGCATCGGAAATGGGAATAACGAAGT
TTTTGGAAGGTGTCATTCCGGACTTTAAAGGCCCCATGGCGCTGCATGAC
AAGGCGCGGCGAGTCCGCACGACGGTGGAGCATGTGAAGGGATGGAATGA
TTATATTTTGTGGGCCCCGGTGGGGAATGATGGCATGGGGTACAAGAGCT
TTGTGTGCGTAGAAAGCGGGGCAGTCTCCAAGCCGGTTACGGTCGAGGGT
GGGTCGGAGTGGGTGGGGGAGATGAAGATTAGTTCCAGGGCGGGCTGA
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Synonyms
Publications