jgi.p|Nanoce1779_2|579195, mRNA_2128 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579195
Unique Name	mRNA_2128
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1343
Alignment location	scaffold_4:869767..871442 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579281
Track	FilteredModels2
ProteinId	579195

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:869767..871442 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579195	gene_2128	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579195	mRNA_2128-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2128	CDS_2128	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:869767..871442+
coding sequence from alignment at scaffold_4:869767..871442+

mRNA sequence

>mRNA_2128 ID=mRNA_2128|Name=jgi.p|Nanoce1779_2|579195|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
ACAGCCGTCTTCCAATACCATGCTGACCGCAGGCAAGTCCATGCTCGGCT
CTTCGCCCACCCCCTTGCTTTCAGCCACCGGCGAGGCACCCGTACTCCTG
CCTGAATCCGGAAGCAAACATCTCGGAAAAAACGAGCCAGCCATTACACA
GCAGCGGGCCCGTCACCACGGGCTCGTCGTGTCCACGCCCTTTGAAAAGC
TGGGCAGTGCCCTCTTCTTCGCTTCGACCTCATTTTCCATCATATTTGTG
AATAAGGCTTTGCTCGCTTCTACTGCCCATGGATTCTTTGGGTTTCCATC
CTTTTTCGCCGTAGCTGCCTGTCAATTCTTTTCTACGTCATTTGTACTTT
ACACACTTAATTTAGCGGGCCGCGTCCAGATTACCGATCCGTCTTTAGAC
GTGTTGAAAGTGATGGGACCCCTGGCTTCGATTGGGTTGATTAATGTTCT
TTGTGGCTTGGGAGGGACGCAGAAGGTCAGCTTACCCATGTTTACGGTAT
TGAGACGTTTTTCGATCCCGATGACGATGGGGTTGGAGTGGTTGTTGTTG
GGAGTAATGGCGTCTCGACAGATTCAATTTAGCGTATTTTTAATGGTGGC
TGGGGCTGTGCTTGCGGGGATCGCCGACTTGAATTTTAACCTGGTCGGAT
ACTTGTTTATTTTGTTTAACAATGTGTGCACGGCACTTAACGGAGTGGTG
ATGAAGAGGACGTTGACGGTTTCGCCCAACATCAGCAGGATGGCAGTGCT
TTATTACAATAGCCTGTTCGGGGCTGTTTTCATGACCGGTCTCCTTCTCT
GTCGCCCCGAGGAAATGCAAGCCGTCCGTAACTTTCCATCTTGGAAAGAC
CCTGCTTTTGTGTTAACCTTTTTTCTAGCCGCAGCGATGGGCTCTCTGCT
TAATTATGCTACCTTTTTGTGTACGCACCACAATAGCGCCTTAACGACGA
CGGTTGTGGGCTGCCTTAAAAATCTAGCCACCACTTACTTCTCCATGCTC
TTTCTGTCCGATTACGTCTTCAGCTTCACCAACTTCCTTGGCGTTACCAT
TTCAGTCATTGGCAGCCTCCTGTACTCTTACATTGAGCTGGGAAAGTACC
GAAATGGGAAGATCACGAAAGACGATGAGAGCAGCAGCAGCAGTAGTGGT
GAGGGAATTGAGAAGGTCGTTGGAAAGTCTAGGGGTGCATTGATCAGGCA
TCGACGCCAGAGGTAGAAGTAGCGGGGATGTACGAGAGAGAATTCTGTAC
GAGTACATGGTTGATGTGTGTGCGCGAAATGTATTCTGAGGGATTAGCTG
AACGAACAAAACAAAAAAGAAGAAAAGAATTGTGTGAATTGAA

protein sequence of jgi.p|Nanoce1779_2|579195

>mRNA_2128-protein ID=mRNA_2128-protein|Name=jgi.p|Nanoce1779_2|579195|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MLTAGKSMLGSSPTPLLSATGEAPVLLPESGSKHLGKNEPAITQQRARHH
GLVVSTPFEKLGSALFFASTSFSIIFVNKALLASTAHGFFGFPSFFAVAA
CQFFSTSFVLYTLNLAGRVQITDPSLDVLKVMGPLASIGLINVLCGLGGT
QKVSLPMFTVLRRFSIPMTMGLEWLLLGVMASRQIQFSVFLMVAGAVLAG
IADLNFNLVGYLFILFNNVCTALNGVVMKRTLTVSPNISRMAVLYYNSLF
GAVFMTGLLLCRPEEMQAVRNFPSWKDPAFVLTFFLAAAMGSLLNYATFL
CTHHNSALTTTVVGCLKNLATTYFSMLFLSDYVFSFTNFLGVTISVIGSL
LYSYIELGKYRNGKITKDDESSSSSSGEGIEKVVGKSRGALIRHRRQR*

mRNA from alignment at scaffold_4:869767..871442+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2128 ID=mRNA_2128|Name=jgi.p|Nanoce1779_2|579195|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at scaffold_4:869767..871442+ (Nannochloropsis oceanica)
ACAGCCGTCTTCCAATACCATGCTGACCGCAGGCAAGTCCATGCTCGGCT
CTTCGCCCACCCCCTTGCTTTCAGCCACCGGCGAGGCACCCGTACTCCTG
CCTGAATCCGGAAGCAAACATCTCGGAAAAAACGAGCCAGCCATTACACA
GCAGCGGGCCCGTCACCACGGGCTCGTCGTGTCCACGCCCTTTGAAAAGC
TGGGCAGTGCCCTCTTCTTCGCTTCGACCTCATTTTCCATCATATTTGTG
AATAAGGCTTTGCTCGCTTCTACTGCCCATGGATTCTTTGGGTTTCCATC
CTTTTTCGCCGTAGCTGCCTGTCAATTCTTTTCTACGTCATTTGTACTTT
ACACACTTAATTTAGCGGGCCGCGTCCAGATTACCGATCCGTCTTTAGAC
GTGTTGAAAGTGATGGGACCCCTGGCTTCGATTGGGTTGATTAATGTTCT
TTGTGGCTTGGGAGGGACGCAGAAGGTCAGCTTACCCATGTTTACGGTAT
TGAGACGTTTTTCGATCCCGATGACGATGGGGTTGGAGTGGTTGTTGTTG
GGAGTAATGGCGTCTCGACAGATTCAATTTAGCGTATTTTTAATGGTGGC
TGGGGCTGTGCTTGCGGGGATCGCCGACTTGAATTTTAACCTGGTCGGAT
ACTTGTTTATTTTGTTTAACAATGTGTGCACGGCACTTAACGGAGTGGTG
ATGAAGAGGACGTTGACGGTTTCGCCCAACATCAGCAGGATGGCAGTGCT
TTATTACAATAGCCTGTTCGGGTAAGTAATGAAAATTGAGACAGAGGGGA
GGAGTACTCATGTCCTTATACCGCCAATTTTCCTATGTAATGGTGCAAAA
AATATATTCAAAGCACTTACTTATTTCTTCAAGTTCATACCCATCGTCTA
CGCAAGAGCCCACCGCCGAAACCCCAAAACCCATTTATCTCTATTTCCTG
CGTCCCACTCCAATACAATTTAGGGCTGTTTTCATGACCGGTCTCCTTCT
CTGTCGCCCCGAGGAAATGCAAGCCGTCCGTAACTTTCCATCTTGGAAAG
ACCCTGCTTTTGTGTTAACCTTTTTTCTAGCCGCAGCGATGGGCTCTCTG
CTTAATTATGCTACCTTTTTGTGTACGCACCACAATAGCGCCTTAACGAC
GACGGTTGTGGGCTGCCTTAAAAATCTAGGTAGGTTGGAAATGATAGCTG
GCCTTATGTGTCCCTTTCTTCCTTTTCTTCTTCTTGTTGTGAAGAATTGG
GATAAGACTATAAAAGCCGGCAACTTATCTGCTCTGCCTACCCCATCCTT
TCCCTCGCAGCCACCACTTACTTCTCCATGCTCTTTCTGTCCGATTACGT
CTTCAGCTTCACCAACTTCCTTGGCGTTACCATTTCAGTCATTGGCAGCC
TCCTGTACTCTTACATTGAGCTGGGAAAGTACCGAAATGGGAAGATCACG
AAAGACGATGAGAGCAGCAGCAGCAGTAGTGGTGAGGGAATTGAGAAGGT
CGTTGGAAAGTCTAGGGGTGCATTGATCAGGCATCGACGCCAGAGGTAGA
AGTAGCGGGGATGTACGAGAGAGAATTCTGTACGAGTACATGGTTGATGT
GTGTGCGCGAAATGTATTCTGAGGGATTAGCTGAACGAACAAAACAAAAA
AGAAGAAAAGAATTGTGTGAATTGAA

Coding sequence (CDS) from alignment at scaffold_4:869767..871442+

>mRNA_2128 ID=mRNA_2128|Name=jgi.p|Nanoce1779_2|579195|organism=Nannochloropsis oceanica|type=CDS|length=3591bp|location=Sequence derived from alignment at scaffold_4:869767..871442+ (Nannochloropsis oceanica)
ATGCTGACCGCAGGCAAGTCCATGCTCGGCTCTTCGCCCACCCCCTTGCT
TTCAGCCACCGGCGAGGCACCCGTACTCCTGCCTGAATCCGGAAGCAAAC
ATCTCGGAAAAAACGAGCCAGCCATTACACAGCAGCGGGCCCGTCACCAC
GGGCTCGTCGTGTCCACGCCCTTTGAAAAGCTGGGCAGTGCCCTCTTCTT
CGCTTCGACCTCATTTTCCATCATATTTGTGAATAAGGCTTTGCTCGCTT
CTACTGCCCATGGATTCTTTGGGTTTCCATCCTTTTTCGCCGTAGCTGCC
TGTCAATTCTTTTCTACGTCATTTGTACTTTACACACTTAATTTAGCGGG
CCGCGTCCAGATTACCGATCCGTCTTTAGACGTGTTGAAAGTGATGGGAC
CCCTGGCTTCGATTGGGTTGATTAATGTTCTTTGTGGCTTGGGAGGGACG
CAGAAGGTCAGCTTACCCATGTTTACGGTATTGAGACGTTTTTCGATCCC
GATGACGATGGGGTTGGAGTGGTTGTTGTTGGGAGTAATGGCGTCTCGAC
AGATTCAATTTAGCGTATTTTTAATGGTGGCTGGGGCTGTGCTTGCGGGG
ATCGCCGACTTGAATTTTAACCTGGTCGGATACTTGTTTATTTTGTTTAA
CAATGTGTGCACGGCACTTAACGGAGTGGTGATGAAGAGGACGTTGACGG
TTTCGCCCAACATCAGCAGGATGGCAGTGCTTTATTACAATAGCCTGTTC
GGGGCTGTTTTCATGACCGGTCTCCTTCTCTGTCGCCCCGAGGAAATGCA
AGCCGTCCGTAACTTTCCATCTTGGAAAGACCCTGCTTTTGTGTTAACCT
TTTTTCTAGCCGCAGCGATGGGCTCTCTGCTTAATTATGCTACCTTTTTG
TGTACGCACCACAATAGCGCCTTAACGACGACGGTTGTGGGCTGCCTTAA
AAATCTAGCCACCACTTACTTCTCCATGCTCTTTCTGTCCGATTACGTCT
TCAGCTTCACCAACTTCCTTGGCGTTACCATTTCAGTCATTGGCAGCCTC
CTGTACTCTTACATTGAGCTGGGAAAGTACCGAAATGGGAAGATCACGAA
AGACGATGAGAGCAGCAGCAGCAGTAGTGGTGAGGGAATTGAGAAGGTCG
TTGGAAAGTCTAGGGGTGCATTGATCAGGCATCGACGCCAGAGGTAGATG
CTGACCGCAGGCAAGTCCATGCTCGGCTCTTCGCCCACCCCCTTGCTTTC
AGCCACCGGCGAGGCACCCGTACTCCTGCCTGAATCCGGAAGCAAACATC
TCGGAAAAAACGAGCCAGCCATTACACAGCAGCGGGCCCGTCACCACGGG
CTCGTCGTGTCCACGCCCTTTGAAAAGCTGGGCAGTGCCCTCTTCTTCGC
TTCGACCTCATTTTCCATCATATTTGTGAATAAGGCTTTGCTCGCTTCTA
CTGCCCATGGATTCTTTGGGTTTCCATCCTTTTTCGCCGTAGCTGCCTGT
CAATTCTTTTCTACGTCATTTGTACTTTACACACTTAATTTAGCGGGCCG
CGTCCAGATTACCGATCCGTCTTTAGACGTGTTGAAAGTGATGGGACCCC
TGGCTTCGATTGGGTTGATTAATGTTCTTTGTGGCTTGGGAGGGACGCAG
AAGGTCAGCTTACCCATGTTTACGGTATTGAGACGTTTTTCGATCCCGAT
GACGATGGGGTTGGAGTGGTTGTTGTTGGGAGTAATGGCGTCTCGACAGA
TTCAATTTAGCGTATTTTTAATGGTGGCTGGGGCTGTGCTTGCGGGGATC
GCCGACTTGAATTTTAACCTGGTCGGATACTTGTTTATTTTGTTTAACAA
TGTGTGCACGGCACTTAACGGAGTGGTGATGAAGAGGACGTTGACGGTTT
CGCCCAACATCAGCAGGATGGCAGTGCTTTATTACAATAGCCTGTTCGGG
GCTGTTTTCATGACCGGTCTCCTTCTCTGTCGCCCCGAGGAAATGCAAGC
CGTCCGTAACTTTCCATCTTGGAAAGACCCTGCTTTTGTGTTAACCTTTT
TTCTAGCCGCAGCGATGGGCTCTCTGCTTAATTATGCTACCTTTTTGTGT
ACGCACCACAATAGCGCCTTAACGACGACGGTTGTGGGCTGCCTTAAAAA
TCTAGCCACCACTTACTTCTCCATGCTCTTTCTGTCCGATTACGTCTTCA
GCTTCACCAACTTCCTTGGCGTTACCATTTCAGTCATTGGCAGCCTCCTG
TACTCTTACATTGAGCTGGGAAAGTACCGAAATGGGAAGATCACGAAAGA
CGATGAGAGCAGCAGCAGCAGTAGTGGTGAGGGAATTGAGAAGGTCGTTG
GAAAGTCTAGGGGTGCATTGATCAGGCATCGACGCCAGAGGTAGATGCTG
ACCGCAGGCAAGTCCATGCTCGGCTCTTCGCCCACCCCCTTGCTTTCAGC
CACCGGCGAGGCACCCGTACTCCTGCCTGAATCCGGAAGCAAACATCTCG
GAAAAAACGAGCCAGCCATTACACAGCAGCGGGCCCGTCACCACGGGCTC
GTCGTGTCCACGCCCTTTGAAAAGCTGGGCAGTGCCCTCTTCTTCGCTTC
GACCTCATTTTCCATCATATTTGTGAATAAGGCTTTGCTCGCTTCTACTG
CCCATGGATTCTTTGGGTTTCCATCCTTTTTCGCCGTAGCTGCCTGTCAA
TTCTTTTCTACGTCATTTGTACTTTACACACTTAATTTAGCGGGCCGCGT
CCAGATTACCGATCCGTCTTTAGACGTGTTGAAAGTGATGGGACCCCTGG
CTTCGATTGGGTTGATTAATGTTCTTTGTGGCTTGGGAGGGACGCAGAAG
GTCAGCTTACCCATGTTTACGGTATTGAGACGTTTTTCGATCCCGATGAC
GATGGGGTTGGAGTGGTTGTTGTTGGGAGTAATGGCGTCTCGACAGATTC
AATTTAGCGTATTTTTAATGGTGGCTGGGGCTGTGCTTGCGGGGATCGCC
GACTTGAATTTTAACCTGGTCGGATACTTGTTTATTTTGTTTAACAATGT
GTGCACGGCACTTAACGGAGTGGTGATGAAGAGGACGTTGACGGTTTCGC
CCAACATCAGCAGGATGGCAGTGCTTTATTACAATAGCCTGTTCGGGGCT
GTTTTCATGACCGGTCTCCTTCTCTGTCGCCCCGAGGAAATGCAAGCCGT
CCGTAACTTTCCATCTTGGAAAGACCCTGCTTTTGTGTTAACCTTTTTTC
TAGCCGCAGCGATGGGCTCTCTGCTTAATTATGCTACCTTTTTGTGTACG
CACCACAATAGCGCCTTAACGACGACGGTTGTGGGCTGCCTTAAAAATCT
AGCCACCACTTACTTCTCCATGCTCTTTCTGTCCGATTACGTCTTCAGCT
TCACCAACTTCCTTGGCGTTACCATTTCAGTCATTGGCAGCCTCCTGTAC
TCTTACATTGAGCTGGGAAAGTACCGAAATGGGAAGATCACGAAAGACGA
TGAGAGCAGCAGCAGCAGTAGTGGTGAGGGAATTGAGAAGGTCGTTGGAA
AGTCTAGGGGTGCATTGATCAGGCATCGACGCCAGAGGTAG

Synonyms

Publications