jgi.p|Nanoce1779_2|668892, mRNA_2222 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668892
Unique NamemRNA_2222
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1200
Alignment locationscaffold_4:1091003..1092627 +

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Properties
Property NameValue
TranscriptId668978
TrackFilteredModels2
ProteinId668892
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1091003..1092627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668892gene_2222Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668892mRNA_2222-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2222CDS_2222Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2222 ID=mRNA_2222|Name=jgi.p|Nanoce1779_2|668892|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
GTGATTTCGCACAAAGTCCAATAGCGGCTGAGGCTCTTGCCCACACGCCA
ACCACGCCCACGCCTAGGGCACGGCAACTAGAAGATAAAGCCCTCCTCGC
ACATTATAGCAACTTCCACGTCAAGACCTTGTAGTGCCCGTATTGCATAG
TGTGGCGGGGAGGGATGTACGATGGCCTCATGACAATAGATCAGATTGGC
TCTCAGCCACACACCCCCACTCCATTGCTATCTTCCGTGCCTTGTTGCAC
CTCTCGCTCATCCATCTTCCCCCTCTCTTTCCCAAACCCACACCAAACAT
GCAATACACAGCGCCATGGCACGAGCCGTTCTCTTCGTAGCCCTTGTCCT
GGCTGTCTTTGCCGCCTTGGCTTCGGCGTTCATGACTCCGGCGCCGATTT
CTCTCCGCACAGCTTCACAGCAATTGACACAACAGAAGGGACGTGTGGCG
GGGAACGTGGTGATGGCTTGCCGGTTCAACGCGAAGCGTGAGAAGAGGAA
GCGTAATGGGGAGAACGCCCGCAAGTATCGTATGAAGAACACCGGACCTA
AATACCTGGCGATCAAGACACGCAAGCGTGCCTCCAAGGCCGAGTATAGC
AAGCGTCTGGAGCAATATGAAACTGATTTTACGGCACAGATTTATCAGTT
GCAAGACGTGGATGCCATGCTGGCGGCCGCGACGGACGGGACAGATGACG
CATAAGCAAGAGAATCGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGG
AGAGCAAGGCATCCTCTATACACACATTCGATGAGAGGGAGGGGAGAAGT
GGGAAGAGTGGGTATTAAACGCTCACTCAAGTTGTGGTGGTAGTGGTTGG
GGGTATAAGAAGGAAGGTGGAGTGGTGTGAACGATATGAGAAGGAAGATA
AGGACGGAGGAAGGGAAGGAGGATGCATGAGAAACGCTTTTGTTTTGTTC
GCACTCTTGTCTTTGAAAGTAAAGCATATTGAAGTGGGGCGCATTCCCTC
TTGCAACCTTTTCCATCCTCTAGAGAATGTTCACTTGAAGTCAGAGAAAG
AGTACCTACACCAGGAGCACCAACAACACCAAAAGGACAACATCCACAAG
AAGCACGGGAAAAAAAAACTTCGAAAAGCAGCCTTATAATCAAAGGTTTA
TGCCAAAAAAAAACGCACACCTGAAACAAGATCCACAAGAAGAAGACGAT
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protein sequence of jgi.p|Nanoce1779_2|668892

>mRNA_2222-protein ID=mRNA_2222-protein|Name=jgi.p|Nanoce1779_2|668892|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MARAVLFVALVLAVFAALASAFMTPAPISLRTASQQLTQQKGRVAGNVVM
ACRFNAKREKRKRNGENARKYRMKNTGPKYLAIKTRKRASKAEYSKRLEQ
YETDFTAQIYQLQDVDAMLAAATDGTDDA*
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mRNA from alignment at scaffold_4:1091003..1092627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2222 ID=mRNA_2222|Name=jgi.p|Nanoce1779_2|668892|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp|location=Sequence derived from alignment at scaffold_4:1091003..1092627+ (Nannochloropsis oceanica)
GTGATTTCGCACAAAGTCCAATAGCGGCTGAGGCTCTTGCCCACACGCCA
ACCACGCCCACGCCTAGGGCACGGCAACTAGAAGATAAAGCCCTCCTCGC
ACATTATAGCAACTTCCACGTCAAGACCTTGTAGTGCCCGTATTGCATAG
TGTGGCGGGGAGGGATGTACGATGGCCTCATGACAATAGATCAGATTGGC
TCTCAGCCACACACCCCCACTCCATTGCTATCTTCCGTGCCTTGTTGCAC
CTCTCGCTCATCCATCTTCCCCCTCTCTTTCCCAAACCCACACCAAACAT
GCAATACACAGCGCCATGGCACGAGCCGTTCTCTTCGTAGCCCTTGTCCT
GGCTGTCTTTGCCGCCTTGGCTTCGGTACGTTGTCTGCGTGAAAGGGTGG
GAGGCAGGGGGAGAGGGTCATCGCTCTAGACGAATGAGAAGCAGATCGAC
TGCATCTACAACAAAGTCTGTCCACACTCACTCCTCGTCTCTCGAAAAAT
CTATCTTGCACAGGCGTTCATGACTCCGGCGCCGATTTCTCTCCGCACAG
GTGGGATGGGCGGGAAGATAGGGGGAGGGATGGGTAGGAGAGAGGGAGGG
ACAGGTGGATGACGATGGGGACTGAGATGGACGGATTGAGCCAATTCTTA
TTCCCTCCCTTCTTTTCTTTTTCAAAACAGCTTCACAGCAATTGACACAA
CAGAAGGGACGTGTGGCGGGGAACGTGGTGATGGCTTGCCGGTTCAACGC
GAAGCGTGAGAAGAGGAAGCGTAATGGGGAGAACGCCCGCAAGTATCGTA
TGAAGGTGAGGATTTTACGAAGGAGGATCGGGGGTGAAGGAGGATCGTAA
AGAGGAGGATGCAGGAAAGCTAAAGAGGTTCGATATAAATCGTATGAGCC
GACGACATGAATCTTCGTTCCCTTAATTTCTCTCTCATCTTCCCTCCCTC
CCTCTTCCTCAGAACACCGGACCTAAATACCTGGCGATCAAGACACGCAA
GCGTGCCTCCAAGGCCGAGTATAGCAAGCGTCTGGAGCAATATGAAACTG
ATTTTACGGCACAGATTTATCAGTTGCAAGACGTGGATGCCATGCTGGCG
GCCGCGACGGACGGGACAGATGACGCATAAGCAAGAGAATCGGAGGGAGG
GAGAGAGGGAGGGAGGGAGGGAGGGAGAGCAAGGCATCCTCTATACACAC
ATTCGATGAGAGGGAGGGGAGAAGTGGGAAGAGTGGGTATTAAACGCTCA
CTCAAGTTGTGGTGGTAGTGGTTGGGGGTATAAGAAGGAAGGTGGAGTGG
TGTGAACGATATGAGAAGGAAGATAAGGACGGAGGAAGGGAAGGAGGATG
CATGAGAAACGCTTTTGTTTTGTTCGCACTCTTGTCTTTGAAAGTAAAGC
ATATTGAAGTGGGGCGCATTCCCTCTTGCAACCTTTTCCATCCTCTAGAG
AATGTTCACTTGAAGTCAGAGAAAGAGTACCTACACCAGGAGCACCAACA
ACACCAAAAGGACAACATCCACAAGAAGCACGGGAAAAAAAAACTTCGAA
AAGCAGCCTTATAATCAAAGGTTTATGCCAAAAAAAAACGCACACCTGAA
ACAAGATCCACAAGAAGAAGACGAT
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Coding sequence (CDS) from alignment at scaffold_4:1091003..1092627+

>mRNA_2222 ID=mRNA_2222|Name=jgi.p|Nanoce1779_2|668892|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_4:1091003..1092627+ (Nannochloropsis oceanica)
ATGGCACGAGCCGTTCTCTTCGTAGCCCTTGTCCTGGCTGTCTTTGCCGC
CTTGGCTTCGGCGTTCATGACTCCGGCGCCGATTTCTCTCCGCACAGCTT
CACAGCAATTGACACAACAGAAGGGACGTGTGGCGGGGAACGTGGTGATG
GCTTGCCGGTTCAACGCGAAGCGTGAGAAGAGGAAGCGTAATGGGGAGAA
CGCCCGCAAGTATCGTATGAAGAACACCGGACCTAAATACCTGGCGATCA
AGACACGCAAGCGTGCCTCCAAGGCCGAGTATAGCAAGCGTCTGGAGCAA
TATGAAACTGATTTTACGGCACAGATTTATCAGTTGCAAGACGTGGATGC
CATGCTGGCGGCCGCGACGGACGGGACAGATGACGCATAAATGGCACGAG
CCGTTCTCTTCGTAGCCCTTGTCCTGGCTGTCTTTGCCGCCTTGGCTTCG
GCGTTCATGACTCCGGCGCCGATTTCTCTCCGCACAGCTTCACAGCAATT
GACACAACAGAAGGGACGTGTGGCGGGGAACGTGGTGATGGCTTGCCGGT
TCAACGCGAAGCGTGAGAAGAGGAAGCGTAATGGGGAGAACGCCCGCAAG
TATCGTATGAAGAACACCGGACCTAAATACCTGGCGATCAAGACACGCAA
GCGTGCCTCCAAGGCCGAGTATAGCAAGCGTCTGGAGCAATATGAAACTG
ATTTTACGGCACAGATTTATCAGTTGCAAGACGTGGATGCCATGCTGGCG
GCCGCGACGGACGGGACAGATGACGCATAAATGGCACGAGCCGTTCTCTT
CGTAGCCCTTGTCCTGGCTGTCTTTGCCGCCTTGGCTTCGGCGTTCATGA
CTCCGGCGCCGATTTCTCTCCGCACAGCTTCACAGCAATTGACACAACAG
AAGGGACGTGTGGCGGGGAACGTGGTGATGGCTTGCCGGTTCAACGCGAA
GCGTGAGAAGAGGAAGCGTAATGGGGAGAACGCCCGCAAGTATCGTATGA
AGAACACCGGACCTAAATACCTGGCGATCAAGACACGCAAGCGTGCCTCC
AAGGCCGAGTATAGCAAGCGTCTGGAGCAATATGAAACTGATTTTACGGC
ACAGATTTATCAGTTGCAAGACGTGGATGCCATGCTGGCGGCCGCGACGG
ACGGGACAGATGACGCATAAATGGCACGAGCCGTTCTCTTCGTAGCCCTT
GTCCTGGCTGTCTTTGCCGCCTTGGCTTCGGCGTTCATGACTCCGGCGCC
GATTTCTCTCCGCACAGCTTCACAGCAATTGACACAACAGAAGGGACGTG
TGGCGGGGAACGTGGTGATGGCTTGCCGGTTCAACGCGAAGCGTGAGAAG
AGGAAGCGTAATGGGGAGAACGCCCGCAAGTATCGTATGAAGAACACCGG
ACCTAAATACCTGGCGATCAAGACACGCAAGCGTGCCTCCAAGGCCGAGT
ATAGCAAGCGTCTGGAGCAATATGAAACTGATTTTACGGCACAGATTTAT
CAGTTGCAAGACGTGGATGCCATGCTGGCGGCCGCGACGGACGGGACAGA
TGACGCATAA
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Synonyms
Publications