jgi.p|Nanoce1779_2|609134, mRNA_9555 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609134
Unique Name	mRNA_9555
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1018
Alignment location	scaffold_44:81837..83687 +

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Properties


Property Name	Value
TranscriptId	609220
Track	FilteredModels2
ProteinId	609134

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:81837..83687 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609134	gene_9555	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609134	mRNA_9555-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9555	CDS_9555	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:81837..83687+
coding sequence from alignment at scaffold_44:81837..83687+

mRNA sequence

>mRNA_9555 ID=mRNA_9555|Name=jgi.p|Nanoce1779_2|609134|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp
AGGCACAGTCATGGCGACCCGAAAGATTGTCAAGCCCAAGGGCCAGGAGG
CAGATGACACGGACCTCAAGGTGGCTTCTGAGTTGTTCCAACTCGAGAGC
AACAACCCTGAGTGGAAGGCAGACTTGAAGGATCTTTACATTACGGCGGC
CAAGGAGGTGGACGTGGGCAAGACCCAAGCCATTGTCGTCTTCGTCCCCT
TTAAGCTCCTTAAAGTGTACCACAAGATCCAACAACGCCTCGTCCGAGAG
TTGGAGAAGAAGTTCAGTGGTTCCCATGTGGTGCTGGTCGCGCAACGCAC
CATCCTGGGGAAGAGCTACGGCCGCTCCACCAAGACCCAAGGCGTCCGCC
CCCGCTCCCGTACCCTGAGCGCGGTCCAAGACGCCATTTTGGAAGACATC
GTATACCCTACCGAAATCGTGGGCAAGCGTACACGGTGCAAGGTGGACGG
CACCAAGACTCTGAAGGTGTTTTTGGATAACAAGGACCAGATGAACGTTG
ACTACAAGCTAGAGACGTTCAAGGAGGTGTACAAGAAGTTGACCAACAAG
GAGGTAGAGTTCACGTTTTTCGTCAAGCAAACAGATGTCTAAGCAGCCGC
AGTAGGATCAACAGCAGCAGAGCAGTAGGAGTGACAGCAGGGATAGATTG
GACTTGTCGCCACTGCTGCTAAGAGAGAGGGAGAAGGTGTTGCAGTTCCT
CGTGCTGCTCGTTCGCGAGGATGGAGAAGGATGAAGAGAGCTGGTTCAGC
GTGTCTGGATGAGATGCGAGGACGAGGACGAGGACTAACACTCTCCGCTG
AGAAAAAACCAATGCAAAACCCCAAAAAAGTTAGATATACATGCCTGACA
TGCTGGTGTGGACGGACGTGAACGGCGAGAGGTGGAAGGGTTGAAGGGGG
GTACTTCTAGAAAGGGAGGCAAACAGCCACCGATAAGACAAAGAAGAGAA
GCACTTGCAACTGCGCCAACTCGAACATGTCGCTTCGAAACATACGATGA
ACACGAAAGCGAACAGGC

protein sequence of jgi.p|Nanoce1779_2|609134

>mRNA_9555-protein ID=mRNA_9555-protein|Name=jgi.p|Nanoce1779_2|609134|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MATRKIVKPKGQEADDTDLKVASELFQLESNNPEWKADLKDLYITAAKEV
DVGKTQAIVVFVPFKLLKVYHKIQQRLVRELEKKFSGSHVVLVAQRTILG
KSYGRSTKTQGVRPRSRTLSAVQDAILEDIVYPTEIVGKRTRCKVDGTKT
LKVFLDNKDQMNVDYKLETFKEVYKKLTNKEVEFTFFVKQTDV*

mRNA from alignment at scaffold_44:81837..83687+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9555 ID=mRNA_9555|Name=jgi.p|Nanoce1779_2|609134|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp|location=Sequence derived from alignment at scaffold_44:81837..83687+ (Nannochloropsis oceanica)
AGGCACAGTCATGGCGACCCGAAAGATTGTCAAGCCCAAGGGCCAGGAGG
CAGATGACACGGACCTCAAGGTGGCTTCTGAGTTGTTCCAACTCGAGGTA
GGGAGGGAATGAGGGAGGGAGGAAGGGAGGGAGGGAGAAGTGGGGGGAGC
CAGTAACTTGTGAAAGTAGGCACATTTGCATTCCTAGAGATAGCGGCAGG
CGTAAGAATCGTCTGGAAAGAGAAAGTGGATCATAGTCGGTTTTGAGTCG
TGGAAGTAGGAGATATGCTGAAGCTAGAGCTGATGACGGGCGTTCTGCGT
TGGGTCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGGAAAGAGGAGA
GAGCTGTACGCATGTATGCATGCATATTGCTGTGACGGCTTGGCATGGCG
CTGTCGGAAGAGGAGTAGAAGGCAGGGAAGGAGAGAGGGCCGGATTGTCA
GATGGCCTTATAAGTAGCTCTAGTCGTTGAGGGATAGTACAGTGCGTCCA
CCATCCCCTCTCATCCCTTCCTCGGTCCATGCTTGGACTCACACACTCCC
CACCTCCCTTCTCTTTCTTCCGAATAGAGCAACAACCCTGAGTGGAAGGC
AGACTTGAAGGATCTTTACATTACGGCGGCCAAGGAGGTGGACGTGGGCA
AGACCCAAGCCATTGTCGTCTTCGTCCCCTTTAAGCTCCTTAAAGTGTAC
CACAAGATCCAACAACGCCTCGTCCGAGAGTTGGAGAAGAAGTTCAGGTG
CGCGCGGATCCCCCTCTCGCTCCCTCCCTTCCGCCTTTCCTCCCTCCGTG
CGCATGACGCATGCGATCCTGATGTAGAGAGCACTCCTTGTCCCTCTCGA
CCAACCCGCACCCTCACATCCATCATCTTTTTCTCTCTTCCCTCCCTCCC
CAGTGGTTCCCATGTGGTGCTGGTCGCGCAACGCACCATCCTGGGGAAGA
GCTACGGCCGCTCCACCAAGACCCAAGGCGTCCGCCCCCGCTCCCGTACC
CTGAGCGCGGTCCAAGACGCCATTTTGGAAGACATCGTATACCCTACCGA
AATCGTGGGCAAGCGTACACGGTGCAAGGTGGACGGCACCAAGACTCTGA
AGGTGTTTTTGGATAACAAGGACCAGGTACGTCCTACCCCTCCTTCCTTC
CCTCCCTCCCTTCCCTCCTCAACCCCCCGGGGACCAGCGCAGCTCGCGAA
GCACGACGGAGTAAAGAAAGATGGAGGGGTGGAGTCAAAGATCGCTCTGG
CTATATTATCATAAGTACAGAAATCACGCCAACATATGGACTCACCCTCC
CTCCCTCGCTCCCTCTCTCGTAGATGAACGTTGACTACAAGCTAGAGACG
TTCAAGGAGGTGTACAAGAAGTTGACCAACAAGGAGGTAGAGTTCACGTT
TTTCGTCAAGCAAACAGATGTCTAAGCAGCCGCAGTAGGATCAACAGCAG
CAGAGCAGTAGGAGTGACAGCAGGGATAGATTGGACTTGTCGCCACTGCT
GCTAAGAGAGAGGGAGAAGGTGTTGCAGTTCCTCGTGCTGCTCGTTCGCG
AGGATGGAGAAGGATGAAGAGAGCTGGTTCAGCGTGTCTGGATGAGATGC
GAGGACGAGGACGAGGACTAACACTCTCCGCTGAGAAAAAACCAATGCAA
AACCCCAAAAAAGTTAGATATACATGCCTGACATGCTGGTGTGGACGGAC
GTGAACGGCGAGAGGTGGAAGGGTTGAAGGGGGGTACTTCTAGAAAGGGA
GGCAAACAGCCACCGATAAGACAAAGAAGAGAAGCACTTGCAACTGCGCC
AACTCGAACATGTCGCTTCGAAACATACGATGAACACGAAAGCGAACAGG
C

Coding sequence (CDS) from alignment at scaffold_44:81837..83687+

>mRNA_9555 ID=mRNA_9555|Name=jgi.p|Nanoce1779_2|609134|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_44:81837..83687+ (Nannochloropsis oceanica)
ATGGCGACCCGAAAGATTGTCAAGCCCAAGGGCCAGGAGGCAGATGACAC
GGACCTCAAGGTGGCTTCTGAGTTGTTCCAACTCGAGAGCAACAACCCTG
AGTGGAAGGCAGACTTGAAGGATCTTTACATTACGGCGGCCAAGGAGGTG
GACGTGGGCAAGACCCAAGCCATTGTCGTCTTCGTCCCCTTTAAGCTCCT
TAAAGTGTACCACAAGATCCAACAACGCCTCGTCCGAGAGTTGGAGAAGA
AGTTCAGTGGTTCCCATGTGGTGCTGGTCGCGCAACGCACCATCCTGGGG
AAGAGCTACGGCCGCTCCACCAAGACCCAAGGCGTCCGCCCCCGCTCCCG
TACCCTGAGCGCGGTCCAAGACGCCATTTTGGAAGACATCGTATACCCTA
CCGAAATCGTGGGCAAGCGTACACGGTGCAAGGTGGACGGCACCAAGACT
CTGAAGGTGTTTTTGGATAACAAGGACCAGATGAACGTTGACTACAAGCT
AGAGACGTTCAAGGAGGTGTACAAGAAGTTGACCAACAAGGAGGTAGAGT
TCACGTTTTTCGTCAAGCAAACAGATGTCTAAATGGCGACCCGAAAGATT
GTCAAGCCCAAGGGCCAGGAGGCAGATGACACGGACCTCAAGGTGGCTTC
TGAGTTGTTCCAACTCGAGAGCAACAACCCTGAGTGGAAGGCAGACTTGA
AGGATCTTTACATTACGGCGGCCAAGGAGGTGGACGTGGGCAAGACCCAA
GCCATTGTCGTCTTCGTCCCCTTTAAGCTCCTTAAAGTGTACCACAAGAT
CCAACAACGCCTCGTCCGAGAGTTGGAGAAGAAGTTCAGTGGTTCCCATG
TGGTGCTGGTCGCGCAACGCACCATCCTGGGGAAGAGCTACGGCCGCTCC
ACCAAGACCCAAGGCGTCCGCCCCCGCTCCCGTACCCTGAGCGCGGTCCA
AGACGCCATTTTGGAAGACATCGTATACCCTACCGAAATCGTGGGCAAGC
GTACACGGTGCAAGGTGGACGGCACCAAGACTCTGAAGGTGTTTTTGGAT
AACAAGGACCAGATGAACGTTGACTACAAGCTAGAGACGTTCAAGGAGGT
GTACAAGAAGTTGACCAACAAGGAGGTAGAGTTCACGTTTTTCGTCAAGC
AAACAGATGTCTAAATGGCGACCCGAAAGATTGTCAAGCCCAAGGGCCAG
GAGGCAGATGACACGGACCTCAAGGTGGCTTCTGAGTTGTTCCAACTCGA
GAGCAACAACCCTGAGTGGAAGGCAGACTTGAAGGATCTTTACATTACGG
CGGCCAAGGAGGTGGACGTGGGCAAGACCCAAGCCATTGTCGTCTTCGTC
CCCTTTAAGCTCCTTAAAGTGTACCACAAGATCCAACAACGCCTCGTCCG
AGAGTTGGAGAAGAAGTTCAGTGGTTCCCATGTGGTGCTGGTCGCGCAAC
GCACCATCCTGGGGAAGAGCTACGGCCGCTCCACCAAGACCCAAGGCGTC
CGCCCCCGCTCCCGTACCCTGAGCGCGGTCCAAGACGCCATTTTGGAAGA
CATCGTATACCCTACCGAAATCGTGGGCAAGCGTACACGGTGCAAGGTGG
ACGGCACCAAGACTCTGAAGGTGTTTTTGGATAACAAGGACCAGATGAAC
GTTGACTACAAGCTAGAGACGTTCAAGGAGGTGTACAAGAAGTTGACCAA
CAAGGAGGTAGAGTTCACGTTTTTCGTCAAGCAAACAGATGTCTAAATGG
CGACCCGAAAGATTGTCAAGCCCAAGGGCCAGGAGGCAGATGACACGGAC
CTCAAGGTGGCTTCTGAGTTGTTCCAACTCGAGAGCAACAACCCTGAGTG
GAAGGCAGACTTGAAGGATCTTTACATTACGGCGGCCAAGGAGGTGGACG
TGGGCAAGACCCAAGCCATTGTCGTCTTCGTCCCCTTTAAGCTCCTTAAA
GTGTACCACAAGATCCAACAACGCCTCGTCCGAGAGTTGGAGAAGAAGTT
CAGTGGTTCCCATGTGGTGCTGGTCGCGCAACGCACCATCCTGGGGAAGA
GCTACGGCCGCTCCACCAAGACCCAAGGCGTCCGCCCCCGCTCCCGTACC
CTGAGCGCGGTCCAAGACGCCATTTTGGAAGACATCGTATACCCTACCGA
AATCGTGGGCAAGCGTACACGGTGCAAGGTGGACGGCACCAAGACTCTGA
AGGTGTTTTTGGATAACAAGGACCAGATGAACGTTGACTACAAGCTAGAG
ACGTTCAAGGAGGTGTACAAGAAGTTGACCAACAAGGAGGTAGAGTTCAC
GTTTTTCGTCAAGCAAACAGATGTCTAA

Synonyms

Publications