jgi.p|Nanoce1779_2|609488, mRNA_9883 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609488
Unique Name	mRNA_9883
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1409
Alignment location	scaffold_45:143063..144471 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	609574
Track	FilteredModels2
ProteinId	609488

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:143063..144471 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609488	gene_9883	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609488	mRNA_9883-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9883	CDS_9883	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:143063..144471+
coding sequence from alignment at scaffold_45:143063..144471+

mRNA sequence

>mRNA_9883 ID=mRNA_9883|Name=jgi.p|Nanoce1779_2|609488|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
GGAGGAAGCGAAGGAGGATGGAAGGGGGGCGGCAATGAGGAAAGGGAAGG
GGGAGGGAGAGGCAGACGAGGACGAGGAGGAGGAGGAGGGAATGGTGGGG
GGTGGCATAGATTGAGGAAGGTGTGGGGCGGTCTGGATGTGAAGTGAGGG
AAGGGATAAGAGTGTACCGATGGGTTGAGAAGGAGAAGAAGGGAGGAGAT
AGACCGAGAGAAGGAAAGGATGTAGAGAAAGCGCGCAATAGGGTGCCAGA
AATTACTAAGATTGATAAGGATGGGGCAATATAATGGTGGATATTGAGAA
GGTTGAGAAGGGTGTGGCAATATTATGGTCTGTACGTCTGTGTGAGTATT
CGGTGGTGGGTACCGTGTATGTAGTGTAGGAGAGTGAAGCGAGGAGGAGG
AGGAGGAGGTGGGTGTAAGCAAGGGTAGGCGAGCGGGCAGAATATTGGCG
GCAAAGTTGTCCCTCTCTGGTTGGACTCATGTATCTTCTGTCCTTCTGTC
TGTTCTGTCTTTGTCTTGTCTTTGGGGATGGTCTTGGGAGGATCAGGCTT
TCCGTCGACGCTCTTACCTATTCTCGCCCGGAACACTGAGAGTAGTTATC
GGCATTGGGTTGCCTGCAGCTGTCATTCACGTCCCTCTGTGTGCTGGTTT
CTCTCAACTACTTTTCGTGGATGTTCAAATTTGGAGACGCGGGCTGCACT
TGACCGCATCGGTTAATTTCTATGTGGAAACCGGCTTATGGGTCGCTTCC
ACTTTATTTATTTATTCATTTATTCATTCAATCTCTTGTCTCTTTTAGCA
TTACTCGCTCATTTCCTTGTTTTTCATTTCATTTTCTTTTATTTGCATCC
GTCCGTAGTTAGAGCTTGGACAACTTCGCCAGTAATCTCGAGACATAGAT
ACGCCATAATTAGTAACAATCATCTATTCAACAAGTTTCGCTACTTGATA
AGCTATTCAGATAGGATTGCCCCTCGCCAGTAGACACATGGGACTTCAAG
TAATGTCGTCTGTTATCCTGTGGTCCAACTTTGTGTATGTGTCTGCACTT
GAAAGGAGGGAATGAGGGAGACCGGGTGTAGATAGAGGACTAATCCTCAT
AAGCTCGATGATCCCTACAAAAAGTGCAGCTAGATGAGAAGGGATATAAG
GGGAAAAGGGAAAGGGGGAAAGAAATAAGTGGAGGAAACAAGAGGAAGAT
TGTGCAAGAGGCGCAGAGAGAATAATTAACCGTCGCAGGGGACTGAGTAA
AGATGAAGAAGCGCGCGCGACGTGAGATGCGTATGTAGCTCGCGCCTCTG
TAACAAGAATGGTTTTGCGATAGGAGAAAAAAGAATAGCGAGGCGGGGAA
TGAGGAAGTGAGGAAGCGACGGTCACCTTCGGGAAGAAGAAACAAAAACT
TTGATCAAA

protein sequence of jgi.p|Nanoce1779_2|609488

>mRNA_9883-protein ID=mRNA_9883-protein|Name=jgi.p|Nanoce1779_2|609488|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MGRFHFIYLFIYSFNLLSLLALLAHFLVFHFIFFYLHPSVVRAWTTSPVI
SRHRYAIISNNHLFNKFRYLISYSDRIAPRQ*

mRNA from alignment at scaffold_45:143063..144471+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9883 ID=mRNA_9883|Name=jgi.p|Nanoce1779_2|609488|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp|location=Sequence derived from alignment at scaffold_45:143063..144471+ (Nannochloropsis oceanica)
GGAGGAAGCGAAGGAGGATGGAAGGGGGGCGGCAATGAGGAAAGGGAAGG
GGGAGGGAGAGGCAGACGAGGACGAGGAGGAGGAGGAGGGAATGGTGGGG
GGTGGCATAGATTGAGGAAGGTGTGGGGCGGTCTGGATGTGAAGTGAGGG
AAGGGATAAGAGTGTACCGATGGGTTGAGAAGGAGAAGAAGGGAGGAGAT
AGACCGAGAGAAGGAAAGGATGTAGAGAAAGCGCGCAATAGGGTGCCAGA
AATTACTAAGATTGATAAGGATGGGGCAATATAATGGTGGATATTGAGAA
GGTTGAGAAGGGTGTGGCAATATTATGGTCTGTACGTCTGTGTGAGTATT
CGGTGGTGGGTACCGTGTATGTAGTGTAGGAGAGTGAAGCGAGGAGGAGG
AGGAGGAGGTGGGTGTAAGCAAGGGTAGGCGAGCGGGCAGAATATTGGCG
GCAAAGTTGTCCCTCTCTGGTTGGACTCATGTATCTTCTGTCCTTCTGTC
TGTTCTGTCTTTGTCTTGTCTTTGGGGATGGTCTTGGGAGGATCAGGCTT
TCCGTCGACGCTCTTACCTATTCTCGCCCGGAACACTGAGAGTAGTTATC
GGCATTGGGTTGCCTGCAGCTGTCATTCACGTCCCTCTGTGTGCTGGTTT
CTCTCAACTACTTTTCGTGGATGTTCAAATTTGGAGACGCGGGCTGCACT
TGACCGCATCGGTTAATTTCTATGTGGAAACCGGCTTATGGGTCGCTTCC
ACTTTATTTATTTATTCATTTATTCATTCAATCTCTTGTCTCTTTTAGCA
TTACTCGCTCATTTCCTTGTTTTTCATTTCATTTTCTTTTATTTGCATCC
GTCCGTAGTTAGAGCTTGGACAACTTCGCCAGTAATCTCGAGACATAGAT
ACGCCATAATTAGTAACAATCATCTATTCAACAAGTTTCGCTACTTGATA
AGCTATTCAGATAGGATTGCCCCTCGCCAGTAGACACATGGGACTTCAAG
TAATGTCGTCTGTTATCCTGTGGTCCAACTTTGTGTATGTGTCTGCACTT
GAAAGGAGGGAATGAGGGAGACCGGGTGTAGATAGAGGACTAATCCTCAT
AAGCTCGATGATCCCTACAAAAAGTGCAGCTAGATGAGAAGGGATATAAG
GGGAAAAGGGAAAGGGGGAAAGAAATAAGTGGAGGAAACAAGAGGAAGAT
TGTGCAAGAGGCGCAGAGAGAATAATTAACCGTCGCAGGGGACTGAGTAA
AGATGAAGAAGCGCGCGCGACGTGAGATGCGTATGTAGCTCGCGCCTCTG
TAACAAGAATGGTTTTGCGATAGGAGAAAAAAGAATAGCGAGGCGGGGAA
TGAGGAAGTGAGGAAGCGACGGTCACCTTCGGGAAGAAGAAACAAAAACT
TTGATCAAA

Coding sequence (CDS) from alignment at scaffold_45:143063..144471+

>mRNA_9883 ID=mRNA_9883|Name=jgi.p|Nanoce1779_2|609488|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_45:143063..144471+ (Nannochloropsis oceanica)
ATGGGTCGCTTCCACTTTATTTATTTATTCATTTATTCATTCAATCTCTT
GTCTCTTTTAGCATTACTCGCTCATTTCCTTGTTTTTCATTTCATTTTCT
TTTATTTGCATCCGTCCGTAGTTAGAGCTTGGACAACTTCGCCAGTAATC
TCGAGACATAGATACGCCATAATTAGTAACAATCATCTATTCAACAAGTT
TCGCTACTTGATAAGCTATTCAGATAGGATTGCCCCTCGCCAGTAG

Synonyms

Publications