jgi.p|Nanoce1779_2|539125, mRNA_2797 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|539125
Unique NamemRNA_2797
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length825
Alignment locationscaffold_5:1213874..1214905 -

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Properties
Property NameValue
TranscriptId539211
TrackFilteredModels2
ProteinId539125
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1213874..1214905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539125gene_2797Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539125mRNA_2797-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2797CDS_2797Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2797 ID=mRNA_2797|Name=jgi.p|Nanoce1779_2|539125|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
GAGCGAGAGGGGAGCGAGAGGATCAGGGCCGCCCGAGGCCAGGGGCCCTG
GGCTCGGGGGAGGGGGCTCGGAACCAAATCTTACCGAGCCACTGACAAGG
GTGAGGCGCGTGGGCATATATGTATGCATTTAACGTGCTACTTGGAACAG
GCGCATCACCACAACCACACCAGCAGGTAGAAATGGCAACAGACAACATC
ACATCGTTACCATGCCCTTGCCTTCTTCACTTTCTTTCACGCCATACTTG
TCGTTACCACCACTTCAAACACAGACAGCCTTGTCGTACGCCTACATCGC
CATCCTCTCCCCCAAAACCTCGCCATGTCCTTGTTTGTGATTGTGGGAAA
GAATGAGCCTATATTTGAGGCCGACTTCTCCACCTCGACCACCAACACTT
CAGGCAAGCCCTCGCCTGCCGATGCAAACAATGCGCATCTCAACCAATTT
ATCCTTCACTCCTCCCTGGACATGTTGGAAAAGGCCATGTGGGCTTCGCC
ACACATGCACCTACGAGCAATCGATCGGTTTAATGGCCAGGTGGTCCACG
CGTTCCTGACCGCGGGAGGCACAGCTTTCCTCTTGCTGCATGATGGGAGT
GGAGGGGAGGATAGTATACTAGGATTCTTCAAGGGGGTGTATGAACTGTA
CGTGAAGTTGCTGATGAACCCTTTCTGTGAGATGGACCTGCCGATTATCA
GCCCGGCGTTTGAGAGTAGGGTAAGAGCATTGGAACGACGGTGGTTGAGG
TGAGGGGATGGGCAGGCAAAGAAAGAAGCGCGATAAATATTTCATGTACA
ATTAAGTCAAGTAAACAGAAAGGCC
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protein sequence of jgi.p|Nanoce1779_2|539125

>mRNA_2797-protein ID=mRNA_2797-protein|Name=jgi.p|Nanoce1779_2|539125|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MSLFVIVGKNEPIFEADFSTSTTNTSGKPSPADANNAHLNQFILHSSLDM
LEKAMWASPHMHLRAIDRFNGQVVHAFLTAGGTAFLLLHDGSGGEDSILG
FFKGVYELYVKLLMNPFCEMDLPIISPAFESRVRALERRWLR*
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mRNA from alignment at scaffold_5:1213874..1214905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2797 ID=mRNA_2797|Name=jgi.p|Nanoce1779_2|539125|organism=Nannochloropsis oceanica|type=mRNA|length=1032bp|location=Sequence derived from alignment at scaffold_5:1213874..1214905- (Nannochloropsis oceanica)
GAGCGAGAGGGGAGCGAGAGGATCAGGGCCGCCCGAGGCCAGGGGCCCTG
GGCTCGGGGGAGGGGGCTCGGAACCAAATCTTACCGAGCCACTGACAAGG
GTGAGGCGCGTGGGCATATATGTATGCATTTAACGTGCTACTTGGAACAG
GCGCATCACCACAACCACACCAGCAGGTAGAAATGGCAACAGACAACATC
ACATCGTTACCATGCCCTTGCCTTCTTCACTTTCTTTCACGCCATACTTG
TCGTTACCACCACTTCAAACACAGACAGCCTTGTCGTACGCCTACATCGC
CATCCTCTCCCCCAAAACCTCGCCATGTCCTTGTTTGTGATTGTGGGAAA
GAATGAGCCTATATTTGAGGCCGACTTCTCCACCTCGACCACCAACACTT
CAGGCAAGGTACGTCCGAGACTGTCTTCCTGCTCCTCATGCGGTTGTGAC
TACTGCTGTTTCCACGTCTTTACACTTTTTTAACGCATCGCTGCGTGGGA
CTCGCAGCCTTTCATGTCAAAATTCTCACCCTTCCACCCGCCTCTCCTTT
ACCTGTCTTTCCCTTTCCCTCCCCTCCCTTCTCTCCCGCACGTCACACTC
TCCCTTCCCCCCCAGCCCTCGCCTGCCGATGCAAACAATGCGCATCTCAA
CCAATTTATCCTTCACTCCTCCCTGGACATGTTGGAAAAGGCCATGTGGG
CTTCGCCACACATGCACCTACGAGCAATCGATCGGTTTAATGGCCAGGTG
GTCCACGCGTTCCTGACCGCGGGAGGCACAGCTTTCCTCTTGCTGCATGA
TGGGAGTGGAGGGGAGGATAGTATACTAGGATTCTTCAAGGGGGTGTATG
AACTGTACGTGAAGTTGCTGATGAACCCTTTCTGTGAGATGGACCTGCCG
ATTATCAGCCCGGCGTTTGAGAGTAGGGTAAGAGCATTGGAACGACGGTG
GTTGAGGTGAGGGGATGGGCAGGCAAAGAAAGAAGCGCGATAAATATTTC
ATGTACAATTAAGTCAAGTAAACAGAAAGGCC
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Coding sequence (CDS) from alignment at scaffold_5:1213874..1214905-

>mRNA_2797 ID=mRNA_2797|Name=jgi.p|Nanoce1779_2|539125|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_5:1213874..1214905- (Nannochloropsis oceanica)
CCCTCGCCTGCCGATGCAAACAATGCGCATCTCAACCAATTTATCCTTCA
CTCCTCCCTGGACATGTTGGAAAAGGCCATGTGGGCTTCGCCACACATGC
ACCTACGAGCAATCGATCGGTTTAATGGCCAGGTGGTCCACGCGTTCCTG
ACCGCGGGAGGCACAGCTTTCCTCTTGCTGCATGATGGGAGTGGAGGGGA
GGATAGTATACTAGGATTCTTCAAGGGGGTGTATGAACTGTACGTGAAGT
TGCTGATGAACCCTTTCTGTGAGATGGACCTGCCGATTATCAGCCCGGCG
TTTGAGAGTAGGGTAAGAGCATTGGAACGACGGTGGTTGAGGTGAATGTC
CTTGTTTGTGATTGTGGGAAAGAATGAGCCTATATTTGAGGCCGACTTCT
CCACCTCGACCACCAACACTTCAGGCAAGCCCTCGCCTGCCGATGCAAAC
AATGCGCATCTCAACCAATTTATCCTTCACTCCTCCCTGGACATGTTGGA
AAAGGCCATGTGGGCTTCGCCACACATGCACCTACGAGCAATCGATCGGT
TTAATGGCCAGGTGGTCCACGCGTTCCTGACCGCGGGAGGCACAGCTTTC
CTCTTGCTGCATGATGGGAGTGGAGGGGAGGATAGTATACTAGGATTCTT
CAAGGGGGTGTATGAACTGTACGTGAAGTTGCTGATGAACCCTTTCTGTG
AGATGGACCTGCCGATTATCAGCCCGGCGTTTGAGAGTAGGGTAAGAGCA
TTGGAACGACGGTGGTTGAGGTGAATGTCCTTGTTTGTGATTGTGGGAAA
GAATGAGCCTATATTTGAGGCCGACTTCTCCACCTCGACCACCAACACTT
CAGGCAAG
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Synonyms
Publications