jgi.p|Nanoce1779_2|580245, mRNA_2405 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580245
Unique NamemRNA_2405
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length489
Alignment locationscaffold_5:258144..258632 +

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Properties
Property NameValue
TranscriptId580331
TrackFilteredModels2
ProteinId580245
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:258144..258632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580245gene_2405Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580245mRNA_2405-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2405CDS_2405Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2405 ID=mRNA_2405|Name=jgi.p|Nanoce1779_2|580245|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
ACAGGTGGTTATTCAGTGGCGGGCATCAAGCGGCAGGCGGCGGCACACAA
GGAGAGGCAACTTCTGCAACGGCCCAGCCATCATCATCACCAAGCATTTA
CCATGAGCACGGGCAGCAAGCTGGGTAAGATAGTCCTGGGCGCGGCCGAA
GTGACGGGCCTGAAGGAGGCCTCGCGCCGGATATTTGGCAACCTGCCTCA
ATTAAATATTGGCAAGACGGGCAACAAAATCCTTCGCAAGGCCTTGATTG
CAGACAAGGTGGTGACGTACTATCCCGCTACGATCAACAAGATTGCGCAC
AAGGAGTGGTACGGGTACAAGACTGACCTAGACATTTGGCGGGAGAACAG
ATTGTCGCGGATGTACATGAGAGGCAACCCCCCCACTAAGAAGGGGGAGG
GCAAGCGAGCGCAGCAGGCCAAGAAGAAAAAGTAGAACAAAAATTGAATA
AACAAAGGGCCAATAAAAAATGAGAACATGTGGGCAAGT
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protein sequence of jgi.p|Nanoce1779_2|580245

>mRNA_2405-protein ID=mRNA_2405-protein|Name=jgi.p|Nanoce1779_2|580245|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MSTGSKLGKIVLGAAEVTGLKEASRRIFGNLPQLNIGKTGNKILRKALIA
DKVVTYYPATINKIAHKEWYGYKTDLDIWRENRLSRMYMRGNPPTKKGEG
KRAQQAKKKK*
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mRNA from alignment at scaffold_5:258144..258632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2405 ID=mRNA_2405|Name=jgi.p|Nanoce1779_2|580245|organism=Nannochloropsis oceanica|type=mRNA|length=489bp|location=Sequence derived from alignment at scaffold_5:258144..258632+ (Nannochloropsis oceanica)
ACAGGTGGTTATTCAGTGGCGGGCATCAAGCGGCAGGCGGCGGCACACAA
GGAGAGGCAACTTCTGCAACGGCCCAGCCATCATCATCACCAAGCATTTA
CCATGAGCACGGGCAGCAAGCTGGGTAAGATAGTCCTGGGCGCGGCCGAA
GTGACGGGCCTGAAGGAGGCCTCGCGCCGGATATTTGGCAACCTGCCTCA
ATTAAATATTGGCAAGACGGGCAACAAAATCCTTCGCAAGGCCTTGATTG
CAGACAAGGTGGTGACGTACTATCCCGCTACGATCAACAAGATTGCGCAC
AAGGAGTGGTACGGGTACAAGACTGACCTAGACATTTGGCGGGAGAACAG
ATTGTCGCGGATGTACATGAGAGGCAACCCCCCCACTAAGAAGGGGGAGG
GCAAGCGAGCGCAGCAGGCCAAGAAGAAAAAGTAGAACAAAAATTGAATA
AACAAAGGGCCAATAAAAAATGAGAACATGTGGGCAAGT
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Coding sequence (CDS) from alignment at scaffold_5:258144..258632+

>mRNA_2405 ID=mRNA_2405|Name=jgi.p|Nanoce1779_2|580245|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_5:258144..258632+ (Nannochloropsis oceanica)
ATGAGCACGGGCAGCAAGCTGGGTAAGATAGTCCTGGGCGCGGCCGAAGT
GACGGGCCTGAAGGAGGCCTCGCGCCGGATATTTGGCAACCTGCCTCAAT
TAAATATTGGCAAGACGGGCAACAAAATCCTTCGCAAGGCCTTGATTGCA
GACAAGGTGGTGACGTACTATCCCGCTACGATCAACAAGATTGCGCACAA
GGAGTGGTACGGGTACAAGACTGACCTAGACATTTGGCGGGAGAACAGAT
TGTCGCGGATGTACATGAGAGGCAACCCCCCCACTAAGAAGGGGGAGGGC
AAGCGAGCGCAGCAGGCCAAGAAGAAAAAGTAG
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Synonyms
Publications