jgi.p|Nanoce1779_2|580136, mRNA_2371 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580136
Unique Name	mRNA_2371
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	988
Alignment location	scaffold_5:178904..179891 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580222
Track	FilteredModels2
ProteinId	580136

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:178904..179891 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580136	gene_2371	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580136	mRNA_2371-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2371	CDS_2371	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:178904..179891+
coding sequence from alignment at scaffold_5:178904..179891+

mRNA sequence

>mRNA_2371 ID=mRNA_2371|Name=jgi.p|Nanoce1779_2|580136|organism=Nannochloropsis oceanica|type=mRNA|length=988bp
CGAAAAGATTGGTGCTTGTCTAGGTGGGATTGCGTGCGTGCATCTATTGG
TCGGATAGACAGGGCACCAAAATGCTCGGGACAAGAACGGCAACTTGATC
TCATCGAAGAAGCCCGCGACCGCACGACGTGGGTGAACAGGTCTTCCTTT
CCAAGCTTTCGTCCGAGTATCGCAAGCGTTTCACATAGCACATCCCACAG
ACACAGCCACAGTCACTATGAAGGTGAGAAGCCTCATCCAATGGAGGCCT
TGCCTTCGTGAGAGTTATGCGCAAGCGAGCTAACTATGCGGTGGAACCTC
ACTTTTGCATATGCACAGTCCCTGCCGCATCATGGCCTCGCCTCCTCCTC
CTTCCCGTTCCCTGCCGCCCACTCGTTTGCTGGATGTGGATCGTACGCAA
GAAGAGGATCCACAACAACAACAACAACAGCAGCAGCAGCACTTTCCCCA
ACCTCACTCCACGTCCGCGCATGCCCTCGATGATGGGGAAGGGGGGGGGA
GGGGAGGGCGTCACGCTCCTTCTCCATCTCCCCCTTCTCAAAAAGAGCAA
GCACCACCACTCCTGACCCTCCCTGGCTTGTTGTTTCGCGCTAAGTGGGC
AAGTGAGAAGTGCCTTGATGGGGTGGATTATGTGGGGGCGGGGGTGGCAG
GGTTATTGGGGATAACTGACTCGAGGTTCCAGTATATTGTCGATAATATG
TCGGAGAAGGACAAGGAGGCAGCGGAGGAGGATTTGAAGAGGATGAGAGA
TGGGATGGAGATGGGAGGGAGGGGCGGAGGAAAGGGAATCTTGCTGATTG
AGGAATTAGCGGCGGGGAGGGGGGAGGTAGGGAGGAAGGGCCGAGGGGGG
CCGGAAGACCACGTGTAGAGTACTTTGTAGGTTATGAGAAAGGGGTAAGT
GTAGATTAGAATTAGGGCATTCAAACTAGGTGATGAGCGAAAACGATGAC
TACAGAAATGTTATATTCAATCAACGACTTTCTCTCAA

protein sequence of jgi.p|Nanoce1779_2|580136

>mRNA_2371-protein ID=mRNA_2371-protein|Name=jgi.p|Nanoce1779_2|580136|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MHSPCRIMASPPPPSRSLPPTRLLDVDRTQEEDPQQQQQQQQQHFPQPHS
TSAHALDDGEGGGRGGRHAPSPSPPSQKEQAPPLLTLPGLLFRAKWASEK
CLDGVDYVGAGVAGLLGITDSRFQYIVDNMSEKDKEAAEEDLKRMRDGME
MGGRGGGKGILLIEELAAGRGEVGRKGRGGPEDHV*

mRNA from alignment at scaffold_5:178904..179891+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2371 ID=mRNA_2371|Name=jgi.p|Nanoce1779_2|580136|organism=Nannochloropsis oceanica|type=mRNA|length=988bp|location=Sequence derived from alignment at scaffold_5:178904..179891+ (Nannochloropsis oceanica)
CGAAAAGATTGGTGCTTGTCTAGGTGGGATTGCGTGCGTGCATCTATTGG
TCGGATAGACAGGGCACCAAAATGCTCGGGACAAGAACGGCAACTTGATC
TCATCGAAGAAGCCCGCGACCGCACGACGTGGGTGAACAGGTCTTCCTTT
CCAAGCTTTCGTCCGAGTATCGCAAGCGTTTCACATAGCACATCCCACAG
ACACAGCCACAGTCACTATGAAGGTGAGAAGCCTCATCCAATGGAGGCCT
TGCCTTCGTGAGAGTTATGCGCAAGCGAGCTAACTATGCGGTGGAACCTC
ACTTTTGCATATGCACAGTCCCTGCCGCATCATGGCCTCGCCTCCTCCTC
CTTCCCGTTCCCTGCCGCCCACTCGTTTGCTGGATGTGGATCGTACGCAA
GAAGAGGATCCACAACAACAACAACAACAGCAGCAGCAGCACTTTCCCCA
ACCTCACTCCACGTCCGCGCATGCCCTCGATGATGGGGAAGGGGGGGGGA
GGGGAGGGCGTCACGCTCCTTCTCCATCTCCCCCTTCTCAAAAAGAGCAA
GCACCACCACTCCTGACCCTCCCTGGCTTGTTGTTTCGCGCTAAGTGGGC
AAGTGAGAAGTGCCTTGATGGGGTGGATTATGTGGGGGCGGGGGTGGCAG
GGTTATTGGGGATAACTGACTCGAGGTTCCAGTATATTGTCGATAATATG
TCGGAGAAGGACAAGGAGGCAGCGGAGGAGGATTTGAAGAGGATGAGAGA
TGGGATGGAGATGGGAGGGAGGGGCGGAGGAAAGGGAATCTTGCTGATTG
AGGAATTAGCGGCGGGGAGGGGGGAGGTAGGGAGGAAGGGCCGAGGGGGG
CCGGAAGACCACGTGTAGAGTACTTTGTAGGTTATGAGAAAGGGGTAAGT
GTAGATTAGAATTAGGGCATTCAAACTAGGTGATGAGCGAAAACGATGAC
TACAGAAATGTTATATTCAATCAACGACTTTCTCTCAA

Coding sequence (CDS) from alignment at scaffold_5:178904..179891+

>mRNA_2371 ID=mRNA_2371|Name=jgi.p|Nanoce1779_2|580136|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_5:178904..179891+ (Nannochloropsis oceanica)
ATGCACAGTCCCTGCCGCATCATGGCCTCGCCTCCTCCTCCTTCCCGTTC
CCTGCCGCCCACTCGTTTGCTGGATGTGGATCGTACGCAAGAAGAGGATC
CACAACAACAACAACAACAGCAGCAGCAGCACTTTCCCCAACCTCACTCC
ACGTCCGCGCATGCCCTCGATGATGGGGAAGGGGGGGGGAGGGGAGGGCG
TCACGCTCCTTCTCCATCTCCCCCTTCTCAAAAAGAGCAAGCACCACCAC
TCCTGACCCTCCCTGGCTTGTTGTTTCGCGCTAAGTGGGCAAGTGAGAAG
TGCCTTGATGGGGTGGATTATGTGGGGGCGGGGGTGGCAGGGTTATTGGG
GATAACTGACTCGAGGTTCCAGTATATTGTCGATAATATGTCGGAGAAGG
ACAAGGAGGCAGCGGAGGAGGATTTGAAGAGGATGAGAGATGGGATGGAG
ATGGGAGGGAGGGGCGGAGGAAAGGGAATCTTGCTGATTGAGGAATTAGC
GGCGGGGAGGGGGGAGGTAGGGAGGAAGGGCCGAGGGGGGCCGGAAGACC
ACGTGTAG

Synonyms

Publications