Properties
| Property Name | Value |
|---|
| TranscriptId | 661924 |
| Track | FilteredModels2 |
| ProteinId | 661838 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:698263..699669 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2581 ID=mRNA_2581|Name=jgi.p|Nanoce1779_2|661838|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp
CTTTCACACCCAACCCGCACCCACAGATGCACCCAGGCGAGGTAAGAGGG
GATGGCAGCCAAGTGCTGCCTCCGAACTATACCCAACACCGCCGCTATCA
GCAGCAGCAGCAGCAGCAGGAGCCACCGAGGCACCAGACCAACCTTCCGG
AGGACATGGATGGCATAATTCCCCGAGCCGCGCCGATGAGAAATCCTCCT
CTTGAGCCGGTCCTCGCAGGGCTTGCATCTCAAAATGGTAGCGGTGACAG
TGGTGGCGGCGGCAAGGGAAAACAAGCCTATCCTCCGGGAGACGGGAGCC
ATCAGCCATTTTTCATCCACGCGCACAACCCGCCACAATTTTCCGTGCTT
CCTCCTCCTCCTCCTCCCCCGCCAGCCGGGGCACAATCGCGCCCCCCACA
ATTAAACCCTCTCCCAGTTCCTTCTCTTCCTCTTCCTTCTTGTTCTTCTT
CTTATCATTCTTCTTCCAACCGTCATTTTGGTTCCCAGCACCCGCCGCCA
GTAACTGAAGTGGTCTTGTCACGGCCACCATCCCCCAGTCCCTCACCACT
TCAGCACCTAGAGCAACAGCAACAACAGCAGAACTACCGCCATAACAGCA
GAAACGACAACAACAACATTATCGACGTTCCGTTCTCCCATCTGTCCCCT
GCTCCCCGTGCACAAGCCTTCTTCCGCAATCCCCCTCCCCAGGTAGCTCT
TCCCCCTCACATCTACAACCCAATGCAGCAGCAGCAGCAGCAGCAACAGC
AGCAGCAACCACTATCGCAAGAAGAATTTGGGCAACAGCAGCTGCAGCGC
CCACACAAGCAACGCGAGGACTCCAGGCGGAGAAAGAAAGGCAAAGCTGG
CCCCTCTTCATCACCTTCCTCTTCCTCATATTGCCCCCCCCCCCTTTTCC
TCCTCTCCCGGCGCCCTCTCAGATTCCAACTTAACCACCATCAGCCACAC
CAAAAGTAGCAAAACAACAGCAACAGCAGCAACTACCGCTGTACCATCCA
TCCGTGGGGAGTCTTCAAACGCCGAGGACGACAATTTGAAAGCTAACAGC
TCCATCCTCCCCGATGGCACGTTTTCCTGCAACCACTGCCAGAAAACATT
CACCCTTAAGGGAAATTTGAAACGACACCTCCTCACACACGGGGGCGTCC
GTCCCTTCTCCTGCTCCATCTGCGAAAAAACCTTCTCGCGGAAAGCCGAC
CTGGAAATCCACGTCCGGGTCCACACAGGCGAGAGACCCTACACCTGCCC
CTGGATGAACTGCGGGCGGCAATTCGCCCGGATTTCTGACTTGAGGTCTC
ACGAGCGAACACACAGTGGCTTGAAGGGTTTTTTGTGTCCCTATTCGGGG
TGTGGGAGGCGGTTTGCAAGGAGATACGACATGAACAAGCATGCGAAGGT
GCACGAG back to topprotein sequence of jgi.p|Nanoce1779_2|661838 >mRNA_2581-protein ID=mRNA_2581-protein|Name=jgi.p|Nanoce1779_2|661838|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MHPGEVRGDGSQVLPPNYTQHRRYQQQQQQQEPPRHQTNLPEDMDGIIPR
AAPMRNPPLEPVLAGLASQNGSGDSGGGGKGKQAYPPGDGSHQPFFIHAH
NPPQFSVLPPPPPPPPAGAQSRPPQLNPLPVPSLPLPSCSSSYHSSSNRH
FGSQHPPPVTEVVLSRPPSPSPSPLQHLEQQQQQQNYRHNSRNDNNNIID
VPFSHLSPAPRAQAFFRNPPPQVALPPHIYNPMQQQQQQQQQQQPLSQEE
FGQQQLQRPHKQREDSRRRKKGKAGPSSSPSSSSYCPPPLFLLSRRPLRF
QLNHHQPHQK* back to topmRNA from alignment at scaffold_5:698263..699669- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2581 ID=mRNA_2581|Name=jgi.p|Nanoce1779_2|661838|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at scaffold_5:698263..699669- (Nannochloropsis oceanica)
CTTTCACACCCAACCCGCACCCACAGATGCACCCAGGCGAGGTAAGAGGG
GATGGCAGCCAAGTGCTGCCTCCGAACTATACCCAACACCGCCGCTATCA
GCAGCAGCAGCAGCAGCAGGAGCCACCGAGGCACCAGACCAACCTTCCGG
AGGACATGGATGGCATAATTCCCCGAGCCGCGCCGATGAGAAATCCTCCT
CTTGAGCCGGTCCTCGCAGGGCTTGCATCTCAAAATGGTAGCGGTGACAG
TGGTGGCGGCGGCAAGGGAAAACAAGCCTATCCTCCGGGAGACGGGAGCC
ATCAGCCATTTTTCATCCACGCGCACAACCCGCCACAATTTTCCGTGCTT
CCTCCTCCTCCTCCTCCCCCGCCAGCCGGGGCACAATCGCGCCCCCCACA
ATTAAACCCTCTCCCAGTTCCTTCTCTTCCTCTTCCTTCTTGTTCTTCTT
CTTATCATTCTTCTTCCAACCGTCATTTTGGTTCCCAGCACCCGCCGCCA
GTAACTGAAGTGGTCTTGTCACGGCCACCATCCCCCAGTCCCTCACCACT
TCAGCACCTAGAGCAACAGCAACAACAGCAGAACTACCGCCATAACAGCA
GAAACGACAACAACAACATTATCGACGTTCCGTTCTCCCATCTGTCCCCT
GCTCCCCGTGCACAAGCCTTCTTCCGCAATCCCCCTCCCCAGGTAGCTCT
TCCCCCTCACATCTACAACCCAATGCAGCAGCAGCAGCAGCAGCAACAGC
AGCAGCAACCACTATCGCAAGAAGAATTTGGGCAACAGCAGCTGCAGCGC
CCACACAAGCAACGCGAGGACTCCAGGCGGAGAAAGAAAGGCAAAGCTGG
CCCCTCTTCATCACCTTCCTCTTCCTCATATTGCCCCCCCCCCCTTTTCC
TCCTCTCCCGGCGCCCTCTCAGATTCCAACTTAACCACCATCAGCCACAC
CAAAAGTAGCAAAACAACAGCAACAGCAGCAACTACCGCTGTACCATCCA
TCCGTGGGGAGTCTTCAAACGCCGAGGACGACAATTTGAAAGCTAACAGC
TCCATCCTCCCCGATGGCACGTTTTCCTGCAACCACTGCCAGAAAACATT
CACCCTTAAGGGAAATTTGAAACGACACCTCCTCACACACGGGGGCGTCC
GTCCCTTCTCCTGCTCCATCTGCGAAAAAACCTTCTCGCGGAAAGCCGAC
CTGGAAATCCACGTCCGGGTCCACACAGGCGAGAGACCCTACACCTGCCC
CTGGATGAACTGCGGGCGGCAATTCGCCCGGATTTCTGACTTGAGGTCTC
ACGAGCGAACACACAGTGGCTTGAAGGGTTTTTTGTGTCCCTATTCGGGG
TGTGGGAGGCGGTTTGCAAGGAGATACGACATGAACAAGCATGCGAAGGT
GCACGAG back to topCoding sequence (CDS) from alignment at scaffold_5:698263..699669- >mRNA_2581 ID=mRNA_2581|Name=jgi.p|Nanoce1779_2|661838|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_5:698263..699669- (Nannochloropsis oceanica)
ATGCACCCAGGCGAGGTAAGAGGGGATGGCAGCCAAGTGCTGCCTCCGAA
CTATACCCAACACCGCCGCTATCAGCAGCAGCAGCAGCAGCAGGAGCCAC
CGAGGCACCAGACCAACCTTCCGGAGGACATGGATGGCATAATTCCCCGA
GCCGCGCCGATGAGAAATCCTCCTCTTGAGCCGGTCCTCGCAGGGCTTGC
ATCTCAAAATGGTAGCGGTGACAGTGGTGGCGGCGGCAAGGGAAAACAAG
CCTATCCTCCGGGAGACGGGAGCCATCAGCCATTTTTCATCCACGCGCAC
AACCCGCCACAATTTTCCGTGCTTCCTCCTCCTCCTCCTCCCCCGCCAGC
CGGGGCACAATCGCGCCCCCCACAATTAAACCCTCTCCCAGTTCCTTCTC
TTCCTCTTCCTTCTTGTTCTTCTTCTTATCATTCTTCTTCCAACCGTCAT
TTTGGTTCCCAGCACCCGCCGCCAGTAACTGAAGTGGTCTTGTCACGGCC
ACCATCCCCCAGTCCCTCACCACTTCAGCACCTAGAGCAACAGCAACAAC
AGCAGAACTACCGCCATAACAGCAGAAACGACAACAACAACATTATCGAC
GTTCCGTTCTCCCATCTGTCCCCTGCTCCCCGTGCACAAGCCTTCTTCCG
CAATCCCCCTCCCCAGGTAGCTCTTCCCCCTCACATCTACAACCCAATGC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACCACTATCGCAAGAAGAA
TTTGGGCAACAGCAGCTGCAGCGCCCACACAAGCAACGCGAGGACTCCAG
GCGGAGAAAGAAAGGCAAAGCTGGCCCCTCTTCATCACCTTCCTCTTCCT
CATATTGCCCCCCCCCCCTTTTCCTCCTCTCCCGGCGCCCTCTCAGATTC
CAACTTAACCACCATCAGCCACACCAAAAGTAG back to top
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