jgi.p|Nanoce1779_2|634150, mRNA_10709 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634150
Unique Name	mRNA_10709
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	652
Alignment location	scaffold_58:35533..37914 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634236
Track	FilteredModels2
ProteinId	634150

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:35533..37914 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634150	gene_10709	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634150	mRNA_10709-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10709	CDS_10709	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_58:35533..37914+
coding sequence from alignment at scaffold_58:35533..37914+

mRNA sequence

>mRNA_10709 ID=mRNA_10709|Name=jgi.p|Nanoce1779_2|634150|organism=Nannochloropsis oceanica|type=mRNA|length=652bp
ACTACACCCTAAAGAAAATGTGAACTACACCCTAAAGAAAATGTGAACAA
CATGTTGATATGTAAATAATCTTGTTCAGGGAGGGAGAAAGGTGCAATGA
TATACACGAATTTGGCGTCTCAAAAAGGTCGTTTTAGCTTTCAGCCCGAA
GAGAGTGGGGAGGTTACCAAATTGGCCACAACTTCTTTTAAAGGCAGGTG
TGTCTTCGAGGAGGGTCTCTCGGTGGCCTACGTCTCCCAACGCTTCTGGA
TCCTCAACGCCACGCTACGGGACAACATTCTCTTCGGCCTCCCATTCAAC
GAAGACCGTTACCGGCGAGCCGTTGAGGCGTGTGCTTTAACGGCAGATCT
GGCACGCATGCCGGGAGGGGACATGACAGAGATAGGGGAGAAGGGCGTCA
ACCTCAGCGGTGGCCAGCAGCAGCGCATCAATCTCGCTCGAGCGTTATAC
TCACAGGCAGACGTACTGCTTATGGACGACGTTTTGTCAGCCGTGGACGC
CCCTCAATACGAAAACACCAAAAATAACATAAACCGTACGGATTATACAG
AAAGTTATGTACATTCTTTGCTCTTTTTACTTTCTTTGGCATTTACGAGC
CTTGCCATCGACATGATGGCATCTATCTCTATCATAATGTGAGCACCAAA
AT

protein sequence of jgi.p|Nanoce1779_2|634150

>mRNA_10709-protein ID=mRNA_10709-protein|Name=jgi.p|Nanoce1779_2|634150|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MIYTNLASQKGRFSFQPEESGEVTKLATTSFKGRCVFEEGLSVAYVSQRF
WILNATLRDNILFGLPFNEDRYRRAVEACALTADLARMPGGDMTEIGEKG
VNLSGGQQQRINLARALYSQADVLLMDDVLSAVDAPQYENTKNNINRTDY
TESYVHSLLFLLSLAFTSLAIDMMASISIIM*

mRNA from alignment at scaffold_58:35533..37914+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10709 ID=mRNA_10709|Name=jgi.p|Nanoce1779_2|634150|organism=Nannochloropsis oceanica|type=mRNA|length=2382bp|location=Sequence derived from alignment at scaffold_58:35533..37914+ (Nannochloropsis oceanica)
ACTACACCCTAAAGAAAATGTGAACTACACCCTAAAGAAAATGTGAACAA
CATGTTGATATGTAAATAATCTTGTTCAGGGAGGGAGAAAGGTGCAATGA
TATACACGAATTTGGCGTCTCAAAAAGGTCGTTTTAGCTTTCAGCCCGAA
GAGAGTGGGGAGGTTACCAAATTGGCCACAACTTCTTTTAAAGGTATGAT
TTGGACTCCACAAACACAGAAATCATGACTCCATGAAGACAGAGATAGCT
TCGGGTAGATGCATGGATCCACCCCGTCGATCTCGCTCCCCATGCGACAA
TACACAGACCGGCACTTACAAACTGTCCACTCTATCACGAGTACAGGCCA
TCATTTGATGGATCTCCCCTATAGCTGTCCAAGCACCACCAGCAACCATG
GTGCCGCTGACCAATGGCAACAATTCTTTGCTACCATGTCATCCTCTCCA
TCGACCGCACTGTGCGTAGCCTCATTTTGGGGATTGGGTGTACTGCGTTT
GTTGGCCACCTGTGTGTATCAAGCATGTGCATGGCAGAGGGGACGGCGAC
GATGGCGGGCACTGCACCGCGCTTGTGCTGATGACACAGACAGGCCTGCT
CGTACTGCCATGGCTGGTGGTAATGGTGTTCATCTTGATTGTTCTGATGC
TGCTACTGGACACCAGAGGAACTCACCGAAATGTGGCAGAACACCTGAGC
AAGCCACTCCTTATCCTCCTTCGTATTCCCTCTTCCCTCCTCCTCCTCTT
CCTCCTCTTCATATTGGACATTCTAAAAAAGGGGGTGGTGTTGGTGCTTA
CAATCACTCTTCTACAAACATGGCTAACGACGACGAAGACAGCAGCAGCA
GCACCCGTGCCCTCAAAGCTTTCCTTCTTCCTCTATCGCCACATAGCGTC
CGTTCTCCCTTACTCCGTCCCTCCCCTCCACCACCCTGGCCCGTCCTCTT
TACACGCGAGACGCTGCTACTGCTGCATCAAGACCGTGGAAGGTACCGAG
GGAGGGAGGGAGGGAAGGAGGGAGGGGAGGAGGGAAGGAGGAGGCTGTGG
AGCGGAGTAGCTGACGGTTTGGTTCACACTCCTCCCCTCCCGTCCTCCTT
CCACCCTTTCCTCCCAGGCAGGTGTGTCTTCGAGGAGGGTCTCTCGGTGG
CCTACGTCTCCCAACGCTTCTGGATCCTCAACGCCACGCTACGGGTAACA
ATGAGGAAGGGAGGGAGGGAGGGAAGGAGAGGGAGAGAGAGGGAAAAAGA
TTCAGGATGAGACTTCAAAAAAGGGAGGGAGGGAGGGAGGGAAGGAGAGG
GAGAGAGAGGGAAGAAGATTCAGGATGAGACTTCAAAAAAGGGAGGGAGG
GAGGGAGGGAAGGAGGATGAGAGAGAGGGAAGAAGATTCAGGATGAGACT
TCAAAAAAGGGAGGGAGGGAGGGAGGGAACGAGAGGGAGAGAGAGGGAAG
AAGATTCAGGATAAGACTTCAAAAAAGGGAGGGAGGGAGGGAGGGAAGGA
GGATGAGAGAGAGGGAAGAAGATTCAGGATGAGACTTCAAAACTTACTGG
ATTCGAATCATTCACAAATATCTTCCCTCGTCCCTTGGTCTCTCACTCTC
TCCACCCCCCCCCCTTCCTCCACAGGACAACATTCTCTTCGGCCTCCCAT
TCAACGAAGACCGTTACCGGCGAGCCGTTGAGGCGTGTGCTTTAACGGCA
GATCTGGCACGCATGCCGGGAGGGGACATGACAGAGATAGGGGAGAAGGT
AATATGGGTCGTCCTTCCCTCCCTTCCTCCCTCCTTCCCTCCCTCTCTTC
CTCACTTCCTCATGTGCAACACCATGCATCGTTCCTCCTTCCGCCCCGCG
TTCTCTCCCTCCTTAAGGGTGGGAGCCTCAGCGGCGATAGGTAGCAGCGT
GTGACCCTCATCCCTCCCTCCCTCCCTCTCTCCCTCCCTCTTTTAGGGCG
TCAACCTCAGCGGTGGCCAGCAGCAGCGCATCAATCTCGCTCGAGCGTTA
TACTCACAGGCAGACGTACTGCTTATGGACGACGTTTTGTCAGGTAGGGA
GGTAGGGAGGTAGGTAGGTAGGTAGGTAGGGAGGTAGGGAGGGAGGGAGG
GAAGATTCGGTAAGCATGTGCGATGCACCTGTTGCACGCGATGATCCTCT
TCCGACTGACATTTTTGTTTCCTCCCTCCCTCTCTCCCTCCCTGCCTCCC
TGCCTCCCTCCCTCCCTTAGCCGTGGACGCCCCTCAATACGAAAACACCA
AAAATAACATAAACCGTACGGATTATACAGAAAGTTATGTACATTCTTTG
CTCTTTTTACTTTCTTTGGCATTTACGAGCCTTGCCATCGACATGATGGC
ATCTATCTCTATCATAATGTGAGCACCAAAAT

Coding sequence (CDS) from alignment at scaffold_58:35533..37914+

>mRNA_10709 ID=mRNA_10709|Name=jgi.p|Nanoce1779_2|634150|organism=Nannochloropsis oceanica|type=CDS|length=2730bp|location=Sequence derived from alignment at scaffold_58:35533..37914+ (Nannochloropsis oceanica)
ATGATATACACGAATTTGGCGTCTCAAAAAGGTCGTTTTAGCTTTCAGCC
CGAAGAGAGTGGGGAGGTTACCAAATTGGCCACAACTTCTTTTAAAGGCA
GGTGTGTCTTCGAGGAGGGTCTCTCGGTGGCCTACGTCTCCCAACGCTTC
TGGATCCTCAACGCCACGCTACGGGACAACATTCTCTTCGGCCTCCCATT
CAACGAAGACCGTTACCGGCGAGCCGTTGAGGCGTGTGCTTTAACGGCAG
ATCTGGCACGCATGCCGGGAGGGGACATGACAGAGATAGGGGAGAAGGGC
GTCAACCTCAGCGGTGGCCAGCAGCAGCGCATCAATCTCGCTCGAGCGTT
ATACTCACAGGCAGACGTACTGCTTATGGACGACGTTTTGTCAGCCGTGG
ACGCCCCTCAATACGAAAACACCAAAAATAACATAAACCGTACGGATTAT
ACAGAAAGTTATGTACATTCTTTGCTCTTTTTACTTTCTTTGGCATTTAC
GAGCCTTGCCATCGACATGATGGCATCTATCTCTATCATAATGTGAATGA
TATACACGAATTTGGCGTCTCAAAAAGGTCGTTTTAGCTTTCAGCCCGAA
GAGAGTGGGGAGGTTACCAAATTGGCCACAACTTCTTTTAAAGGCAGGTG
TGTCTTCGAGGAGGGTCTCTCGGTGGCCTACGTCTCCCAACGCTTCTGGA
TCCTCAACGCCACGCTACGGGACAACATTCTCTTCGGCCTCCCATTCAAC
GAAGACCGTTACCGGCGAGCCGTTGAGGCGTGTGCTTTAACGGCAGATCT
GGCACGCATGCCGGGAGGGGACATGACAGAGATAGGGGAGAAGGGCGTCA
ACCTCAGCGGTGGCCAGCAGCAGCGCATCAATCTCGCTCGAGCGTTATAC
TCACAGGCAGACGTACTGCTTATGGACGACGTTTTGTCAGCCGTGGACGC
CCCTCAATACGAAAACACCAAAAATAACATAAACCGTACGGATTATACAG
AAAGTTATGTACATTCTTTGCTCTTTTTACTTTCTTTGGCATTTACGAGC
CTTGCCATCGACATGATGGCATCTATCTCTATCATAATGTGAATGATATA
CACGAATTTGGCGTCTCAAAAAGGTCGTTTTAGCTTTCAGCCCGAAGAGA
GTGGGGAGGTTACCAAATTGGCCACAACTTCTTTTAAAGGCAGGTGTGTC
TTCGAGGAGGGTCTCTCGGTGGCCTACGTCTCCCAACGCTTCTGGATCCT
CAACGCCACGCTACGGGACAACATTCTCTTCGGCCTCCCATTCAACGAAG
ACCGTTACCGGCGAGCCGTTGAGGCGTGTGCTTTAACGGCAGATCTGGCA
CGCATGCCGGGAGGGGACATGACAGAGATAGGGGAGAAGGGCGTCAACCT
CAGCGGTGGCCAGCAGCAGCGCATCAATCTCGCTCGAGCGTTATACTCAC
AGGCAGACGTACTGCTTATGGACGACGTTTTGTCAGCCGTGGACGCCCCT
CAATACGAAAACACCAAAAATAACATAAACCGTACGGATTATACAGAAAG
TTATGTACATTCTTTGCTCTTTTTACTTTCTTTGGCATTTACGAGCCTTG
CCATCGACATGATGGCATCTATCTCTATCATAATGTGAATGATATACACG
AATTTGGCGTCTCAAAAAGGTCGTTTTAGCTTTCAGCCCGAAGAGAGTGG
GGAGGTTACCAAATTGGCCACAACTTCTTTTAAAGGCAGGTGTGTCTTCG
AGGAGGGTCTCTCGGTGGCCTACGTCTCCCAACGCTTCTGGATCCTCAAC
GCCACGCTACGGGACAACATTCTCTTCGGCCTCCCATTCAACGAAGACCG
TTACCGGCGAGCCGTTGAGGCGTGTGCTTTAACGGCAGATCTGGCACGCA
TGCCGGGAGGGGACATGACAGAGATAGGGGAGAAGGGCGTCAACCTCAGC
GGTGGCCAGCAGCAGCGCATCAATCTCGCTCGAGCGTTATACTCACAGGC
AGACGTACTGCTTATGGACGACGTTTTGTCAGCCGTGGACGCCCCTCAAT
ACGAAAACACCAAAAATAACATAAACCGTACGGATTATACAGAAAGTTAT
GTACATTCTTTGCTCTTTTTACTTTCTTTGGCATTTACGAGCCTTGCCAT
CGACATGATGGCATCTATCTCTATCATAATGTGAATGATATACACGAATT
TGGCGTCTCAAAAAGGTCGTTTTAGCTTTCAGCCCGAAGAGAGTGGGGAG
GTTACCAAATTGGCCACAACTTCTTTTAAAGGCAGGTGTGTCTTCGAGGA
GGGTCTCTCGGTGGCCTACGTCTCCCAACGCTTCTGGATCCTCAACGCCA
CGCTACGGGACAACATTCTCTTCGGCCTCCCATTCAACGAAGACCGTTAC
CGGCGAGCCGTTGAGGCGTGTGCTTTAACGGCAGATCTGGCACGCATGCC
GGGAGGGGACATGACAGAGATAGGGGAGAAGGGCGTCAACCTCAGCGGTG
GCCAGCAGCAGCGCATCAATCTCGCTCGAGCGTTATACTCACAGGCAGAC
GTACTGCTTATGGACGACGTTTTGTCAGCCGTGGACGCCCCTCAATACGA
AAACACCAAAAATAACATAAACCGTACGGATTATACAGAAAGTTATGTAC
ATTCTTTGCTCTTTTTACTTTCTTTGGCATTTACGAGCCTTGCCATCGAC
ATGATGGCATCTATCTCTATCATAATGTGA

Synonyms

Publications