jgi.p|Nanoce1779_2|353617, mRNA_10450 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|353617
Unique NamemRNA_10450
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length819
Alignment locationscaffold_57:39181..40844 +

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Properties
Property NameValue
TranscriptId353703
TrackFilteredModels2
ProteinId353617
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:39181..40844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|353617gene_10450Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|353617mRNA_10450-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10450CDS_10450Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10450 ID=mRNA_10450|Name=jgi.p|Nanoce1779_2|353617|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
ACCACCACACTACCGCCTTGCATGCACTCAGCCTCGATGACACAAGCTTA
CACACACTTTTCTATGGTTGATTGGTTGGTTGATTATTATGTAAACGCGC
ACACACTAGCGCCTGTGTAAGGCAATGTCCCTGTCCAACCTCCCCGTCCG
ACTTGCCTCCTCAGCCTCCCTCACTCTCCTCCTCCCCCTCTGTCAACAAC
TCAGCCCAACCATGGAGGACAGCGGCATGCCAGGCACCATCGAGGCTTTT
GCTCGGGCCTCCCGGCATGGGCGGTTCGGTGGGGACGAGGAAGAAGAGGA
GGAAGTCGACGACGTGGTTGGTAGCAATTTCTTCAGAAAGCAGGCAATCC
CGGCGGGTATGGAAATGGAGATGGCCTTGATGCGAGAAGAGCGAGAAAGG
GACAAAGAGCTCAAGGAAAAGAATTATTCCTCCACTAGTGGTAATCGGCG
GGTGTGGGAAAACCATGAGATCGGTGTGGGTTATCAGCACAAGACGGTGA
TGCGACAGGCAGTAGCCCATCACGACAAGGTTGTAATAACGGATATGAGC
AAGGAGAAGAAGAAGAGGAAGAAGAAGAGTGCCGAAGAAAAAGAAGCAGA
GAAGGAGAAGGAGCGAGAGGCGGTACGTCCTTTCTCCCCTTTTCTCTTAG
TTATGGGGGGGGAGGGAGGATGAGGATCTACCTCTTCTCCTCCCTCCGCC
CTAGGCCTCTTTCGGCTTGATTCACAGCTTTTATAACATGTCCCTGATTT
CCCCTTCATTCCTACTTCTGCTTATTCCTCTTCCTTTTTCTTCCCTCCCC
CTTTACATCTTATCGTGTA
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protein sequence of jgi.p|Nanoce1779_2|353617

>mRNA_10450-protein ID=mRNA_10450-protein|Name=jgi.p|Nanoce1779_2|353617|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MSLSNLPVRLASSASLTLLLPLCQQLSPTMEDSGMPGTIEAFARASRHGR
FGGDEEEEEEVDDVVGSNFFRKQAIPAGMEMEMALMREERERDKELKEKN
YSSTSGNRRVWENHEIGVGYQHKTVMRQAVAHHDKVVITDMSKEKKKRKK
KSAEEKEAEKEKEREAVRPFSPFLLVMGGEGG*
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mRNA from alignment at scaffold_57:39181..40844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10450 ID=mRNA_10450|Name=jgi.p|Nanoce1779_2|353617|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at scaffold_57:39181..40844+ (Nannochloropsis oceanica)
ACCACCACACTACCGCCTTGCATGCACTCAGCCTCGATGACACAAGCTTA
CACACACTTTTCTATGGTTGATTGGTTGGTTGATTATTATGTAAACGCGC
ACACACTAGCGCCTGTGTAAGGCAATGTCCCTGTCCAACCTCCCCGTCCG
ACTTGCCTCCTCAGCCTCCCTCACTCTCCTCCTCCCCCTCTGTCAACAAC
TCAGCCCAACCATGGAGGACAGCGGCATGCCAGGCACCATCGAGGCTTTT
GCTCGGGCCTCCCGGCATGGGCGGTTCGGTGGGGACGAGGAAGAAGAGGA
GGAAGTCGACGACGTGGTTGGTAGCAATTTCTTCAGAAAGCAGGTGGGTT
GAGGGCAAGCATCATAGAAAGAGAGAAATGGAGGAGGGGCGGGATGGACT
GGAAAGGATGGAGAGTCAAGAATATGCGAATAGGATGGGTGTGGAGGAAG
GATGCATGGTATTGGTCGGTCAGAAGGAGGAATGATCGAGGAATGGAAGG
GGATGACGCGGTGGAAGAAAGGGTGGATAAAAGAGGTGAAGAGAGGAGAT
GCGGCGAGTACGCTGGGTAGATCGAAGATGGAAGGGAGTAACGCTGGTTT
TTCGCGCTCTCATAGAGACACCCAAGCTTGTCTCACGCTCGATATCTTTC
CTTCCACCATCCCTCCCTCCCTCCATGCTTCCCTCCTATTCCACTTTCCT
TCCTCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCCTTGATGCGAG
AAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGTGAGTGCAGAGTCGA
TGGTGAAGGGGGGCATTGCTTGAGCCTGAACATAAGGCTCAGAACTAGCT
TTGGAAGATTGATTGGTTGATCGATCGGTTCATCGATTCTTAAGTGAAAT
TGACATTGACCTTAAGGACCTCAAGGCTCATAGTTTATCAGAATAGCTTT
GAAGGAGGGTGGGGTGCTCGTCGTCTCGTGGGTGATTTCTCTCCTCCTTC
CCCCCTCCCTTCTTCCCTCCTTTCCTCACCTCCCTCATTCTCACTGCTCG
ACTGTCTATGTTCCTTTTCCAACACAGGAATTATTCCTCCACTAGTGGTA
ATCGGCGGGTGTGGGAAAACCATGAGATCGGTGTGGGGTAAGTGCATGGG
GCCGGGAAAGACGAGCGAAAGAGGGAGCGAAAGAGGGAGCGAAGGAGGGA
GGGAGGGAGGGAAGATAAATGACAATTCAGAAAAGGGGGATGGAAGGGAA
AGGTGTGACTCAAAAGAATGACCTGTCTCATTCCACGTATATTACCCCCC
CATCATTCCTCTCCTCCCTCTCAAGTTATCAGCACAAGACGGTGATGCGA
CAGGCAGTAGCCCATCACGACAAGGTTGTAATAACGGATATGAGCAAGGA
GAAGAAGAAGAGGAAGAAGAAGAGTGCCGAAGAAAAAGAAGCAGAGAAGG
AGAAGGAGCGAGAGGCGGTACGTCCTTTCTCCCCTTTTCTCTTAGTTATG
GGGGGGGAGGGAGGATGAGGATCTACCTCTTCTCCTCCCTCCGCCCTAGG
CCTCTTTCGGCTTGATTCACAGCTTTTATAACATGTCCCTGATTTCCCCT
TCATTCCTACTTCTGCTTATTCCTCTTCCTTTTTCTTCCCTCCCCCTTTA
CATCTTATCGTGTA
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Coding sequence (CDS) from alignment at scaffold_57:39181..40844+

>mRNA_10450 ID=mRNA_10450|Name=jgi.p|Nanoce1779_2|353617|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_57:39181..40844+ (Nannochloropsis oceanica)
ATGTCCCTGTCCAACCTCCCCGTCCGACTTGCCTCCTCAGCCTCCCTCAC
TCTCCTCCTCCCCCTCTGTCAACAACTCAGCCCAACCATGGAGGACAGCG
GCATGCCAGGCACCATCGAGGCTTTTGCTCGGGCCTCCCGGCATGGGCGG
TTCGGTGGGGACGAGGAAGAAGAGGAGGAAGTCGACGACGTGGTTGGTAG
CAATTTCTTCAGAAAGCAGGCAATCCCGGCGGGTATGGAAATGGAGATGG
CCTTGATGCGAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGAAT
TATTCCTCCACTAGTGGTAATCGGCGGGTGTGGGAAAACCATGAGATCGG
TGTGGGTTATCAGCACAAGACGGTGATGCGACAGGCAGTAGCCCATCACG
ACAAGGTTGTAATAACGGATATGAGCAAGGAGAAGAAGAAGAGGAAGAAG
AAGAGTGCCGAAGAAAAAGAAGCAGAGAAGGAGAAGGAGCGAGAGGCGGT
ACGTCCTTTCTCCCCTTTTCTCTTAGTTATGGGGGGGGAGGGAGGATGAA
TGTCCCTGTCCAACCTCCCCGTCCGACTTGCCTCCTCAGCCTCCCTCACT
CTCCTCCTCCCCCTCTGTCAACAACTCAGCCCAACCATGGAGGACAGCGG
CATGCCAGGCACCATCGAGGCTTTTGCTCGGGCCTCCCGGCATGGGCGGT
TCGGTGGGGACGAGGAAGAAGAGGAGGAAGTCGACGACGTGGTTGGTAGC
AATTTCTTCAGAAAGCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGC
CTTGATGCGAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGAATT
ATTCCTCCACTAGTGGTAATCGGCGGGTGTGGGAAAACCATGAGATCGGT
GTGGGTTATCAGCACAAGACGGTGATGCGACAGGCAGTAGCCCATCACGA
CAAGGTTGTAATAACGGATATGAGCAAGGAGAAGAAGAAGAGGAAGAAGA
AGAGTGCCGAAGAAAAAGAAGCAGAGAAGGAGAAGGAGCGAGAGGCGGTA
CGTCCTTTCTCCCCTTTTCTCTTAGTTATGGGGGGGGAGGGAGGATGAAT
GTCCCTGTCCAACCTCCCCGTCCGACTTGCCTCCTCAGCCTCCCTCACTC
TCCTCCTCCCCCTCTGTCAACAACTCAGCCCAACCATGGAGGACAGCGGC
ATGCCAGGCACCATCGAGGCTTTTGCTCGGGCCTCCCGGCATGGGCGGTT
CGGTGGGGACGAGGAAGAAGAGGAGGAAGTCGACGACGTGGTTGGTAGCA
ATTTCTTCAGAAAGCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCC
TTGATGCGAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGAATTA
TTCCTCCACTAGTGGTAATCGGCGGGTGTGGGAAAACCATGAGATCGGTG
TGGGTTATCAGCACAAGACGGTGATGCGACAGGCAGTAGCCCATCACGAC
AAGGTTGTAATAACGGATATGAGCAAGGAGAAGAAGAAGAGGAAGAAGAA
GAGTGCCGAAGAAAAAGAAGCAGAGAAGGAGAAGGAGCGAGAGGCGGTAC
GTCCTTTCTCCCCTTTTCTCTTAGTTATGGGGGGGGAGGGAGGATGAATG
TCCCTGTCCAACCTCCCCGTCCGACTTGCCTCCTCAGCCTCCCTCACTCT
CCTCCTCCCCCTCTGTCAACAACTCAGCCCAACCATGGAGGACAGCGGCA
TGCCAGGCACCATCGAGGCTTTTGCTCGGGCCTCCCGGCATGGGCGGTTC
GGTGGGGACGAGGAAGAAGAGGAGGAAGTCGACGACGTGGTTGGTAGCAA
TTTCTTCAGAAAGCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCCT
TGATGCGAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGAATTAT
TCCTCCACTAGTGGTAATCGGCGGGTGTGGGAAAACCATGAGATCGGTGT
GGGTTATCAGCACAAGACGGTGATGCGACAGGCAGTAGCCCATCACGACA
AGGTTGTAATAACGGATATGAGCAAGGAGAAGAAGAAGAGGAAGAAGAAG
AGTGCCGAAGAAAAAGAAGCAGAGAAGGAGAAGGAGCGAGAGGCGGTACG
TCCTTTCTCCCCTTTTCTCTTAGTTATGGGGGGGGAGGGAGGATGA
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Synonyms
Publications