jgi.p|Nanoce1779_2|611547, mRNA_10448 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611547
Unique NamemRNA_10448
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1256
Alignment locationscaffold_57:36527..37782 +

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Properties
Property NameValue
TranscriptId611633
TrackFilteredModels2
ProteinId611547
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:36527..37782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611547gene_10448Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611547mRNA_10448-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10448CDS_10448Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10448 ID=mRNA_10448|Name=jgi.p|Nanoce1779_2|611547|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp
ACAGGCCTAACTACTACACCATGTATTTTTTTTTTAAAAACATCACCAAC
ATTAAGGAATGGGGATGGTGGCCAAAAGTAGCTTGTGGCGTGGCTCTTAT
CTATGTACAATGGAGGATACATTTGAATTTTAACAGCAGCAGTCCCACTC
CAAACGAACGACTGAAAATTAAACACGTCACATCCAATGAATGGCACGCA
AGGAAGACACAGGAAGTTAATTTCCTGAAGGACGATACCAGACGGGTAAT
TGTGTATCGCAATGACTTTGAAAATAGTGTCTGGACACATGAACTTAAGT
TTTGGGACAAAATCCAAAGGAATGAGTGGGAACCTACAACTTTCAAGATT
ATCAAGCACTATTTGGAAGACCATGCAGACGCGTCGTACATCGATTTTGG
CGCTTGGATTGGACCCACTGTTCTGTTTGCAGCCCAGTTCTCCAAGCATG
TATATGCTTTAGAACCTGACCAGCAAGCCTTTTCGGCTCTCGTCGCAAAT
GTCAATGCAAACAGCGATCTGGTCTCGAATGTTCAGCTTTTCCATGAGTG
CATCAATACCGAGTCCGGCCCGATGACTTTCCGAGGCAAGGGCGACAGCA
CCAGCCGTTTTAGCAGCACTCTTAATGTGGGAAATGTGGCGAACTCGCCT
GAATGGACCATCGCTTGTCGTTCCTTGCCTGAATTCATCGCTCAAGAAGA
TGTGACAAATCTGCGCCTCATCAAAATTGACACTGAAGGCGCTGAATTAT
TTTTACTACCCTCACTGGTAGGCTGGCTGCACCAGCTATCCTCCCCCAAA
CCATCGCTGTGGCTTTCGGTGCATCAACCATTTTGGAAAGAGGACGTGTC
AATCGCAACCAAGCAAGCTTTTTGGACCGCTCTACGGGCATACAGGTATG
TCTATTTTGAAGGAACCACGCCTGTGACCATGCGCGAGGATAATTATAAC
ACATTGTGCGAAGAATTCTGCTCCTACCTCCTAAGCGATGAAGAGTTTGT
CATGCCTTCTTGATGGGCGACCAGATCTGCAAGTGATGAAAGATATTTAC
CAGAGATCAGATATACAGGGTTAGGGTTACAAAGAATAGAGAGTATTGAT
CGAAAGAAGTGATCCCATTCAGGTATCAAGGAAGTATAACGACCATATAG
ACACAAGGCTTTATTGAGTCTTATATATGGCAAACCGGACTATACAGAAA
GTTATTTAAGTTTTTTGCTCTTTTTACTTTTTTGGGGTTTTAATTACCAT
AACGAG
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protein sequence of jgi.p|Nanoce1779_2|611547

>mRNA_10448-protein ID=mRNA_10448-protein|Name=jgi.p|Nanoce1779_2|611547|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MYFFFKNITNIKEWGWWPKVACGVALIYVQWRIHLNFNSSSPTPNERLKI
KHVTSNEWHARKTQEVNFLKDDTRRVIVYRNDFENSVWTHELKFWDKIQR
NEWEPTTFKIIKHYLEDHADASYIDFGAWIGPTVLFAAQFSKHVYALEPD
QQAFSALVANVNANSDLVSNVQLFHECINTESGPMTFRGKGDSTSRFSST
LNVGNVANSPEWTIACRSLPEFIAQEDVTNLRLIKIDTEGAELFLLPSLV
GWLHQLSSPKPSLWLSVHQPFWKEDVSIATKQAFWTALRAYRYVYFEGTT
PVTMREDNYNTLCEEFCSYLLSDEEFVMPS*
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mRNA from alignment at scaffold_57:36527..37782+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10448 ID=mRNA_10448|Name=jgi.p|Nanoce1779_2|611547|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp|location=Sequence derived from alignment at scaffold_57:36527..37782+ (Nannochloropsis oceanica)
ACAGGCCTAACTACTACACCATGTATTTTTTTTTTAAAAACATCACCAAC
ATTAAGGAATGGGGATGGTGGCCAAAAGTAGCTTGTGGCGTGGCTCTTAT
CTATGTACAATGGAGGATACATTTGAATTTTAACAGCAGCAGTCCCACTC
CAAACGAACGACTGAAAATTAAACACGTCACATCCAATGAATGGCACGCA
AGGAAGACACAGGAAGTTAATTTCCTGAAGGACGATACCAGACGGGTAAT
TGTGTATCGCAATGACTTTGAAAATAGTGTCTGGACACATGAACTTAAGT
TTTGGGACAAAATCCAAAGGAATGAGTGGGAACCTACAACTTTCAAGATT
ATCAAGCACTATTTGGAAGACCATGCAGACGCGTCGTACATCGATTTTGG
CGCTTGGATTGGACCCACTGTTCTGTTTGCAGCCCAGTTCTCCAAGCATG
TATATGCTTTAGAACCTGACCAGCAAGCCTTTTCGGCTCTCGTCGCAAAT
GTCAATGCAAACAGCGATCTGGTCTCGAATGTTCAGCTTTTCCATGAGTG
CATCAATACCGAGTCCGGCCCGATGACTTTCCGAGGCAAGGGCGACAGCA
CCAGCCGTTTTAGCAGCACTCTTAATGTGGGAAATGTGGCGAACTCGCCT
GAATGGACCATCGCTTGTCGTTCCTTGCCTGAATTCATCGCTCAAGAAGA
TGTGACAAATCTGCGCCTCATCAAAATTGACACTGAAGGCGCTGAATTAT
TTTTACTACCCTCACTGGTAGGCTGGCTGCACCAGCTATCCTCCCCCAAA
CCATCGCTGTGGCTTTCGGTGCATCAACCATTTTGGAAAGAGGACGTGTC
AATCGCAACCAAGCAAGCTTTTTGGACCGCTCTACGGGCATACAGGTATG
TCTATTTTGAAGGAACCACGCCTGTGACCATGCGCGAGGATAATTATAAC
ACATTGTGCGAAGAATTCTGCTCCTACCTCCTAAGCGATGAAGAGTTTGT
CATGCCTTCTTGATGGGCGACCAGATCTGCAAGTGATGAAAGATATTTAC
CAGAGATCAGATATACAGGGTTAGGGTTACAAAGAATAGAGAGTATTGAT
CGAAAGAAGTGATCCCATTCAGGTATCAAGGAAGTATAACGACCATATAG
ACACAAGGCTTTATTGAGTCTTATATATGGCAAACCGGACTATACAGAAA
GTTATTTAAGTTTTTTGCTCTTTTTACTTTTTTGGGGTTTTAATTACCAT
AACGAG
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Coding sequence (CDS) from alignment at scaffold_57:36527..37782+

>mRNA_10448 ID=mRNA_10448|Name=jgi.p|Nanoce1779_2|611547|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at scaffold_57:36527..37782+ (Nannochloropsis oceanica)
ATGTATTTTTTTTTTAAAAACATCACCAACATTAAGGAATGGGGATGGTG
GCCAAAAGTAGCTTGTGGCGTGGCTCTTATCTATGTACAATGGAGGATAC
ATTTGAATTTTAACAGCAGCAGTCCCACTCCAAACGAACGACTGAAAATT
AAACACGTCACATCCAATGAATGGCACGCAAGGAAGACACAGGAAGTTAA
TTTCCTGAAGGACGATACCAGACGGGTAATTGTGTATCGCAATGACTTTG
AAAATAGTGTCTGGACACATGAACTTAAGTTTTGGGACAAAATCCAAAGG
AATGAGTGGGAACCTACAACTTTCAAGATTATCAAGCACTATTTGGAAGA
CCATGCAGACGCGTCGTACATCGATTTTGGCGCTTGGATTGGACCCACTG
TTCTGTTTGCAGCCCAGTTCTCCAAGCATGTATATGCTTTAGAACCTGAC
CAGCAAGCCTTTTCGGCTCTCGTCGCAAATGTCAATGCAAACAGCGATCT
GGTCTCGAATGTTCAGCTTTTCCATGAGTGCATCAATACCGAGTCCGGCC
CGATGACTTTCCGAGGCAAGGGCGACAGCACCAGCCGTTTTAGCAGCACT
CTTAATGTGGGAAATGTGGCGAACTCGCCTGAATGGACCATCGCTTGTCG
TTCCTTGCCTGAATTCATCGCTCAAGAAGATGTGACAAATCTGCGCCTCA
TCAAAATTGACACTGAAGGCGCTGAATTATTTTTACTACCCTCACTGGTA
GGCTGGCTGCACCAGCTATCCTCCCCCAAACCATCGCTGTGGCTTTCGGT
GCATCAACCATTTTGGAAAGAGGACGTGTCAATCGCAACCAAGCAAGCTT
TTTGGACCGCTCTACGGGCATACAGGTATGTCTATTTTGAAGGAACCACG
CCTGTGACCATGCGCGAGGATAATTATAACACATTGTGCGAAGAATTCTG
CTCCTACCTCCTAAGCGATGAAGAGTTTGTCATGCCTTCTTGA
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Synonyms
Publications