jgi.p|Nanoce1779_2|669529, mRNA_3576 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669529
Unique Name	mRNA_3576
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1162
Alignment location	scaffold_6:691322..692891 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669615
Track	FilteredModels2
ProteinId	669529

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:691322..692891 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669529	gene_3576	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669529	mRNA_3576-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3576	CDS_3576	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:691322..692891-
coding sequence from alignment at scaffold_6:691322..692891-

mRNA sequence

>mRNA_3576 ID=mRNA_3576|Name=jgi.p|Nanoce1779_2|669529|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp
AGACAGGAGAAGCCCTGGCTAGTGGAAGCATTGGTAAGGTGAAGAGGGAA
ACATGGCGCCTCTAGGCAAAAACGCAAGCCCGCAGGACCTGTTCAATGGT
GCAGTTTTGCAATGTGTGGAAGCGGCCACGCTTGGAATGCCTCTAGAGGT
GTGGAAGACTCGGATGGGACGTTTTCGGGCCGAGACGACGGTAGAGGCTT
TCAAAAACGTCTACACGGAAGGAGGCCTTGGTGCCTTCTGGCGGGGGACG
AGTGCGAAGATGGTGGAATCAGCAAGCAAGGGGGCTATTTTGCTGTTTTC
CAAGGAGGCTATAGCTAATTCTTTGCTTGCATCCGGTGTCTCTCAAACAA
CGACCGGGTTCGTGGCCGGCGCAGGCGGTGGTGTTTGCCAAGTGGTGGTC
ATGGGACCGTGCACTTTCCTGGTAACGGCGGCCGTGACGGGTGGGAAGCA
ACACGTGGGGGTATTTTCCAAGGCGAGCGAAGTATGGCAGAGCAAGGGCA
TCAAGGGTTTCTATCCGGGCGGTACCGCGATTGCCTTCCGTCAAGCCACC
AACTGGGCCTCGCGGCAAGGATTTACCGAGGCCGTACGGGAGCAATTTAA
GATCCTCTTGCACGACGGGGACAAGACGGCCAAGCTAACCGTGGCACAGG
AGGCGTGGGCAGGCATCATTGGAGGAGCATTATCTTGTTGGAACCATCCG
TTCGAAGTGGCACGGATCGAGATGCAGGCTTCTGCCAGCGCGGGCGAGGC
GTCGCGGTCCATGGGGAAGGTGATGCAGGCCATCGTGACGCAAGAGGGCG
TGGGCGGGCTCTTCAAGGGGGTTATTCCAAGGGTGTTCCTAGGGATTTGG
CAAACGCTTTTTATGGTCACGGGGGCAAAACTTGTCAAGAATGCTTTGGA
AGGTGGTAAATAGCAAGGAGGGGACAAGAATCTGGAAAGACACGACAGTA
TGCGTCCATCTTGCCCCCATATATGTTTCACACGAGGGTACTCCGACTTG
TCTCGCAGTCATCGAGACGCCCGAACACGAGTACTTGTCTTTCAACGGAA
GTGAGCCCGCCCACATAACGCACCCTGTACATATAGTTCTGCTGGTAACT
CGAAACAGTTGAACAATAGAAGCACACGAAAAGCAAATCGAATACAAGTG
GACGTCACAATT

protein sequence of jgi.p|Nanoce1779_2|669529

>mRNA_3576-protein ID=mRNA_3576-protein|Name=jgi.p|Nanoce1779_2|669529|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MAPLGKNASPQDLFNGAVLQCVEAATLGMPLEVWKTRMGRFRAETTVEAF
KNVYTEGGLGAFWRGTSAKMVESASKGAILLFSKEAIANSLLASGVSQTT
TGFVAGAGGGVCQVVVMGPCTFLVTAAVTGGKQHVGVFSKASEVWQSKGI
KGFYPGGTAIAFRQATNWASRQGFTEAVREQFKILLHDGDKTAKLTVAQE
AWAGIIGGALSCWNHPFEVARIEMQASASAGEASRSMGKVMQAIVTQEGV
GGLFKGVIPRVFLGIWQTLFMVTGAKLVKNALEGGK*

mRNA from alignment at scaffold_6:691322..692891-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3576 ID=mRNA_3576|Name=jgi.p|Nanoce1779_2|669529|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp|location=Sequence derived from alignment at scaffold_6:691322..692891- (Nannochloropsis oceanica)
AGACAGGAGAAGCCCTGGCTAGTGGAAGCATTGGTAAGGTGAAGAGGGAA
ACATGGCGCCTCTAGGCAAAAACGCAAGCCCGCAGGACCTGTTCAATGGT
GCAGTTTTGCAATGTGTGGAAGCGGCCACGCTTGGAATGCCTCTAGAGGT
GTGGAAGACTCGGATGGGACGTTTTCGGGCCGAGACGACGGTAGAGGCTT
TCAAAAACGTCTACACGGAAGGAGGCCTTGGTGCCTTCTGGCGGGGGACG
AGTGCGAAGATGGTGGAATCAGCAAGCAAGGGGGCTATTTTGCTGTTTTC
CAAGGAGGCTATAGCTAATTCTTTGCTTGCATCCGGTGTCTCTCAAACAA
CGACCGGGTAAGTTCGAGGCAGGGCTCTAGTATGGTTCGGAAGAAATCAG
AGCACGCTGTGGTGTTCATCAAGACGCCGGTGAGGCTGGGCGAGCAGTGT
TTGCCATTTTTTTGACTGCAATCACACTTCTCTACATTTTTACCTCACAT
GACAGGTTCGTGGCCGGCGCAGGCGGTGGTGTTTGCCAAGTGGTGGTCAT
GGGACCGTGCACTTTCCTGGTAACGGCGGCCGTGACGGGTGGGAAGCAAC
ACGTGGGGGTATTTTCCAAGGCGAGCGAAGTATGGCAGAGCAAGGGCATC
AAGGGTTTCTATCCGGGCGGTACCGCGATTGCCTTCCGTCAAGCCACCAA
CTGGGCCTCGCGGCAAGGATTTACCGAGGCCGTACGGGAGCAATTTAAGA
TCCTCTTGCACGACGGGGACAAGACGGCCAAGCTAACCGTGGCACAGGAG
GCGTGGGCAGGCATCATTGGAGGAGCATTATCTTGTTGGAACCATCCGTT
CGTAAGTCCTCGGGCCCTCCTTCCTTACGTGTGTGTATGCCTTATGTTAT
GCGTATTGCATGCACATTTCCTTTTTAAATACGAACGCTGTACGTAAGTC
AAATGGCCTTCTCCTCCTTTTCTTTTCCTATTGCTTTTCCTGTTTTCACA
GGAAGTGGCACGGATCGAGATGCAGGCTTCTGCCAGCGCGGGCGAGGCGT
CGCGGTCCATGGGGAAGGTGATGCAGGCCATCGTGACGCAAGAGGGCGTG
GGCGGGCTCTTCAAGGGGGTTATTCCAAGGGTGTTCCTAGGTAGGATAGG
TTAGGGATAGTGTTGAGACGACTAAGGAGGATATGCCACCGCGCTGATCC
CTTCTCATCCCCTCCCTCCCTTCCCTTTCTCACTACTTTCACACATACAG
GGATTTGGCAAACGCTTTTTATGGTCACGGGGGCAAAACTTGTCAAGAAT
GCTTTGGAAGGTGGTAAATAGCAAGGAGGGGACAAGAATCTGGAAAGACA
CGACAGTATGCGTCCATCTTGCCCCCATATATGTTTCACACGAGGGTACT
CCGACTTGTCTCGCAGTCATCGAGACGCCCGAACACGAGTACTTGTCTTT
CAACGGAAGTGAGCCCGCCCACATAACGCACCCTGTACATATAGTTCTGC
TGGTAACTCGAAACAGTTGAACAATAGAAGCACACGAAAAGCAAATCGAA
TACAAGTGGACGTCACAATT

Coding sequence (CDS) from alignment at scaffold_6:691322..692891-

>mRNA_3576 ID=mRNA_3576|Name=jgi.p|Nanoce1779_2|669529|organism=Nannochloropsis oceanica|type=CDS|length=3444bp|location=Sequence derived from alignment at scaffold_6:691322..692891- (Nannochloropsis oceanica)
GGATTTGGCAAACGCTTTTTATGGTCACGGGGGCAAAACTTGTCAAGAAT
GCTTTGGAAGGTGGTAAATAGGAAGTGGCACGGATCGAGATGCAGGCTTC
TGCCAGCGCGGGCGAGGCGTCGCGGTCCATGGGGAAGGTGATGCAGGCCA
TCGTGACGCAAGAGGGCGTGGGCGGGCTCTTCAAGGGGGTTATTCCAAGG
GTGTTCCTAGGTTCGTGGCCGGCGCAGGCGGTGGTGTTTGCCAAGTGGTG
GTCATGGGACCGTGCACTTTCCTGGTAACGGCGGCCGTGACGGGTGGGAA
GCAACACGTGGGGGTATTTTCCAAGGCGAGCGAAGTATGGCAGAGCAAGG
GCATCAAGGGTTTCTATCCGGGCGGTACCGCGATTGCCTTCCGTCAAGCC
ACCAACTGGGCCTCGCGGCAAGGATTTACCGAGGCCGTACGGGAGCAATT
TAAGATCCTCTTGCACGACGGGGACAAGACGGCCAAGCTAACCGTGGCAC
AGGAGGCGTGGGCAGGCATCATTGGAGGAGCATTATCTTGTTGGAACCAT
CCGTTCATGGCGCCTCTAGGCAAAAACGCAAGCCCGCAGGACCTGTTCAA
TGGTGCAGTTTTGCAATGTGTGGAAGCGGCCACGCTTGGAATGCCTCTAG
AGGTGTGGAAGACTCGGATGGGACGTTTTCGGGCCGAGACGACGGTAGAG
GCTTTCAAAAACGTCTACACGGAAGGAGGCCTTGGTGCCTTCTGGCGGGG
GACGAGTGCGAAGATGGTGGAATCAGCAAGCAAGGGGGCTATTTTGCTGT
TTTCCAAGGAGGCTATAGCTAATTCTTTGCTTGCATCCGGTGTCTCTCAA
ACAACGACCGGGGATTTGGCAAACGCTTTTTATGGTCACGGGGGCAAAAC
TTGTCAAGAATGCTTTGGAAGGTGGTAAATAGGAAGTGGCACGGATCGAG
ATGCAGGCTTCTGCCAGCGCGGGCGAGGCGTCGCGGTCCATGGGGAAGGT
GATGCAGGCCATCGTGACGCAAGAGGGCGTGGGCGGGCTCTTCAAGGGGG
TTATTCCAAGGGTGTTCCTAGGTTCGTGGCCGGCGCAGGCGGTGGTGTTT
GCCAAGTGGTGGTCATGGGACCGTGCACTTTCCTGGTAACGGCGGCCGTG
ACGGGTGGGAAGCAACACGTGGGGGTATTTTCCAAGGCGAGCGAAGTATG
GCAGAGCAAGGGCATCAAGGGTTTCTATCCGGGCGGTACCGCGATTGCCT
TCCGTCAAGCCACCAACTGGGCCTCGCGGCAAGGATTTACCGAGGCCGTA
CGGGAGCAATTTAAGATCCTCTTGCACGACGGGGACAAGACGGCCAAGCT
AACCGTGGCACAGGAGGCGTGGGCAGGCATCATTGGAGGAGCATTATCTT
GTTGGAACCATCCGTTCATGGCGCCTCTAGGCAAAAACGCAAGCCCGCAG
GACCTGTTCAATGGTGCAGTTTTGCAATGTGTGGAAGCGGCCACGCTTGG
AATGCCTCTAGAGGTGTGGAAGACTCGGATGGGACGTTTTCGGGCCGAGA
CGACGGTAGAGGCTTTCAAAAACGTCTACACGGAAGGAGGCCTTGGTGCC
TTCTGGCGGGGGACGAGTGCGAAGATGGTGGAATCAGCAAGCAAGGGGGC
TATTTTGCTGTTTTCCAAGGAGGCTATAGCTAATTCTTTGCTTGCATCCG
GTGTCTCTCAAACAACGACCGGGGATTTGGCAAACGCTTTTTATGGTCAC
GGGGGCAAAACTTGTCAAGAATGCTTTGGAAGGTGGTAAATAGGAAGTGG
CACGGATCGAGATGCAGGCTTCTGCCAGCGCGGGCGAGGCGTCGCGGTCC
ATGGGGAAGGTGATGCAGGCCATCGTGACGCAAGAGGGCGTGGGCGGGCT
CTTCAAGGGGGTTATTCCAAGGGTGTTCCTAGGTTCGTGGCCGGCGCAGG
CGGTGGTGTTTGCCAAGTGGTGGTCATGGGACCGTGCACTTTCCTGGTAA
CGGCGGCCGTGACGGGTGGGAAGCAACACGTGGGGGTATTTTCCAAGGCG
AGCGAAGTATGGCAGAGCAAGGGCATCAAGGGTTTCTATCCGGGCGGTAC
CGCGATTGCCTTCCGTCAAGCCACCAACTGGGCCTCGCGGCAAGGATTTA
CCGAGGCCGTACGGGAGCAATTTAAGATCCTCTTGCACGACGGGGACAAG
ACGGCCAAGCTAACCGTGGCACAGGAGGCGTGGGCAGGCATCATTGGAGG
AGCATTATCTTGTTGGAACCATCCGTTCATGGCGCCTCTAGGCAAAAACG
CAAGCCCGCAGGACCTGTTCAATGGTGCAGTTTTGCAATGTGTGGAAGCG
GCCACGCTTGGAATGCCTCTAGAGGTGTGGAAGACTCGGATGGGACGTTT
TCGGGCCGAGACGACGGTAGAGGCTTTCAAAAACGTCTACACGGAAGGAG
GCCTTGGTGCCTTCTGGCGGGGGACGAGTGCGAAGATGGTGGAATCAGCA
AGCAAGGGGGCTATTTTGCTGTTTTCCAAGGAGGCTATAGCTAATTCTTT
GCTTGCATCCGGTGTCTCTCAAACAACGACCGGGGATTTGGCAAACGCTT
TTTATGGTCACGGGGGCAAAACTTGTCAAGAATGCTTTGGAAGGTGGTAA
ATAGGAAGTGGCACGGATCGAGATGCAGGCTTCTGCCAGCGCGGGCGAGG
CGTCGCGGTCCATGGGGAAGGTGATGCAGGCCATCGTGACGCAAGAGGGC
GTGGGCGGGCTCTTCAAGGGGGTTATTCCAAGGGTGTTCCTAGGTTCGTG
GCCGGCGCAGGCGGTGGTGTTTGCCAAGTGGTGGTCATGGGACCGTGCAC
TTTCCTGGTAACGGCGGCCGTGACGGGTGGGAAGCAACACGTGGGGGTAT
TTTCCAAGGCGAGCGAAGTATGGCAGAGCAAGGGCATCAAGGGTTTCTAT
CCGGGCGGTACCGCGATTGCCTTCCGTCAAGCCACCAACTGGGCCTCGCG
GCAAGGATTTACCGAGGCCGTACGGGAGCAATTTAAGATCCTCTTGCACG
ACGGGGACAAGACGGCCAAGCTAACCGTGGCACAGGAGGCGTGGGCAGGC
ATCATTGGAGGAGCATTATCTTGTTGGAACCATCCGTTCATGGCGCCTCT
AGGCAAAAACGCAAGCCCGCAGGACCTGTTCAATGGTGCAGTTTTGCAAT
GTGTGGAAGCGGCCACGCTTGGAATGCCTCTAGAGGTGTGGAAGACTCGG
ATGGGACGTTTTCGGGCCGAGACGACGGTAGAGGCTTTCAAAAACGTCTA
CACGGAAGGAGGCCTTGGTGCCTTCTGGCGGGGGACGAGTGCGAAGATGG
TGGAATCAGCAAGCAAGGGGGCTATTTTGCTGTTTTCCAAGGAGGCTATA
GCTAATTCTTTGCTTGCATCCGGTGTCTCTCAAACAACGACCGG

Synonyms

Publications