jgi.p|Nanoce1779_2|629109, mRNA_3752 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629109
Unique Name	mRNA_3752
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1591
Alignment location	scaffold_6:1152678..1154504 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629195
Track	FilteredModels2
ProteinId	629109

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1152678..1154504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629109	gene_3752	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629109	mRNA_3752-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3752	CDS_3752	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1152678..1154504+
coding sequence from alignment at scaffold_6:1152678..1154504+

mRNA sequence

>mRNA_3752 ID=mRNA_3752|Name=jgi.p|Nanoce1779_2|629109|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp
ACAGGCCATTCCGCCACTATTGTATCCAAACTCAAGCATTATGAATCTGT
TAAAGTCGAGTCTTGTCTTCTCTTTTGCCTTCGGCATGGTCTTCACCACC
GCCTATACTGGCGTGCCCTTCGAGTACCGCGTCGGTATGGAGCTGTCTAG
CCATCAAGGTATCACGGCCCACATGCCCTCCTTAACCTTGCATACAAATA
TTGATGCATTCTACCACCACCTCCACGGGCCGCATCTCGTCCTTGCAGCC
CCGGTGCTTACCCCTGCTACTCCTTACGAGAACACCTCCTGTGGCATCGA
GGGGGTTACCGAGGAGGCCAAGCTAGAAGGTACCTGTCCCATCCGGTCTG
TCGAGAAAATTTCTTGTAAACATGCTCACGTCAATGTCCACAGTGAGGGC
TCTACCAAGCTACTCTTGAGGGGGAGTGAAGAAATGAGGTCCTTCGGGCT
TAACACCACGTGCCGCAACGTCCGCAATCACCGTCTGTTTCTCTCTAAGG
ACCAGCAGCTGTTCGGACTTTCCGATTCGGAGCTCTTTTTGAGCAAGGAG
GTCGCAGGTTTGGTGGGATTGATGGTGACTTGGTTTATGGCCTTTCCTGA
GTCAACCAGCGACCTGTCCTCGATGACTCGCACGGCGGCTAGCACACACG
TGGTTTTTATTTTCCTTCTTGTGGCCTATGTGCTGGCACTTTTCATGATC
CTTGTAATGCATTTCACGGCTTTGGCGGGGAAGAAGCACAACGGGTATTT
GAATGTAAGGGTTCCTGAGAGGGAGGAATTGGCAGGGGACGATAAGAAAG
GAGAGAAGGGGAAGCACATGGAGGGAGCTACTGCAACAGTAGGAATCGAA
CAGCAGCAATTCATGCCCACCGAGGCCCTGCTGCAAGCGCAAGAGTCCTT
GGCGGAGGCGAAGAAGGAGGGAGTTGGTGGTCCGTGCGATGTTGTGACAA
ATCATTTTGAAAAGGAGTGTCGAAAGGTGCAACATGCAGAGAGTTCGAGC
CTTTTCGAGGATGAGGGTTTAATTGGGACTGTAATTGCCAAGCTGCTGGT
AGCGGAAGACGAGGGAGTTGAGGCCGTCCCTCCTGTCTTCAATAACGTGG
AGCGCCGAAAGATGACTCTGAAGACTTGGACGAACTTCCGGATGATGACC
AAAGGCCCAGGCGGCCACAGACTCTCTGTGGCTCGCATGGATATGGCGCC
TTCCACTTCTATCTCCTATGTCACTGGAGAAGGCGAGCGGAGCCGCAGTG
AGTCTGTCCTGCCTAGAGGAACGACATCCTTTTCGATCAATGTTGACGGC
GCGGTAGTGTTAACGGCCGCTCACAAGCCCAAGAAGATGGGCAAGATGGC
CGCCTTTCGGGCAAGGTGGAAGCGCGTCTTTCGAGTTCCAGTTCGCAAGA
GCTCGTTTTCCCATCGGGCCACAGCTGCTACTTCCTCGTGTGGCATGGCT
TAGAAAATGGGGGGACACTTGTACGTGCACGTGTGAGTGTATGTGCATGT
GTCGGTGTTTCCGCGTACATGTGCGCGCGGGTGCCTATGAGAGCGTAAAT
TTCTGTGTGTCTATGTCTGTAACTTCCATTTATGAGTGTGC

protein sequence of jgi.p|Nanoce1779_2|629109

>mRNA_3752-protein ID=mRNA_3752-protein|Name=jgi.p|Nanoce1779_2|629109|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MNLLKSSLVFSFAFGMVFTTAYTGVPFEYRVGMELSSHQGITAHMPSLTL
HTNIDAFYHHLHGPHLVLAAPVLTPATPYENTSCGIEGVTEEAKLEGTCP
IRSVEKISCKHAHVNVHSEGSTKLLLRGSEEMRSFGLNTTCRNVRNHRLF
LSKDQQLFGLSDSELFLSKEVAGLVGLMVTWFMAFPESTSDLSSMTRTAA
STHVVFIFLLVAYVLALFMILVMHFTALAGKKHNGYLNVRVPEREELAGD
DKKGEKGKHMEGATATVGIEQQQFMPTEALLQAQESLAEAKKEGVGGPCD
VVTNHFEKECRKVQHAESSSLFEDEGLIGTVIAKLLVAEDEGVEAVPPVF
NNVERRKMTLKTWTNFRMMTKGPGGHRLSVARMDMAPSTSISYVTGEGER
SRSESVLPRGTTSFSINVDGAVVLTAAHKPKKMGKMAAFRARWKRVFRVP
VRKSSFSHRATAATSSCGMA*

mRNA from alignment at scaffold_6:1152678..1154504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3752 ID=mRNA_3752|Name=jgi.p|Nanoce1779_2|629109|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp|location=Sequence derived from alignment at scaffold_6:1152678..1154504+ (Nannochloropsis oceanica)
ACAGGCCATTCCGCCACTATTGTATCCAAACTCAAGCATTATGAATCTGT
TAAAGTCGAGTCTTGTCTTCTCTTTTGCCTTCGGCATGGTCTTCACCACC
GCCTATACTGGCGTGCCCTTCGAGTACCGCGTCGGTATGGAGCTGTCTAG
CCATCAAGGTATCACGGCCCACATGCCCTCCTTAACCTTGCATACAAATA
TTGATGCATTCTACCACCACCTCCACGGGCCGCATCTCGTCCTTGCAGCC
CCGGTGCTTACCCCTGCTACTCCTTACGAGAACACCTCCTGTGGCATCGA
GGGGGTTACCGAGGAGGCCAAGCTAGAAGGTACCTGTCCCATCCGGTCTG
TCGAGAAAATTTCTTGTAAACATGCTCACGTCAATGTCCACAGTGAGGGC
TCTACCAAGGTATGTGAGTTTTTGTTGCTTCCTCCCCCCTCTTTCCTCGT
TCATTCGCTTCTAGCCACTCCCGTTTCTCCTTCCTTTTCTTCACTCACAT
CTAAGACCTCTATTTCTCCTCATTTGGATTTTCAAGTCAAATTTTCTGAA
GATGCAAATGCCTTCTATTGCCCTCGATGCTTTTACTTCTTAAAACTCAG
CTGTTGCTTTTCTGCCTACCCTATACCAACCCACCCTCCTTACAGCTACT
CTTGAGGGGGAGTGAAGAAATGAGGTCCTTCGGGCTTAACACCACGTGCC
GCAACGTCCGCAATCACCGTCTGTTTCTCTCTAAGGACCAGCAGCTGTTC
GGACTTTCCGATTCGGAGCTCTTTTTGAGCAAGGAGGTCGCAGGTTTGGT
GGGATTGATGGTGACTTGGTTTATGGCCTTTCCTGAGTCAACCAGCGACC
TGTCCTCGATGACTCGCACGGCGGCTAGCACACACGTGGTTTTTATTTTC
CTTCTTGTGGCCTATGTGCTGGCACTTTTCATGATCCTTGTAATGCATTT
CACGGCTTTGGCGGGGAAGAAGCACAACGGGTATTTGAATGTAAGGGTTC
CTGAGAGGGAGGAATTGGCAGGGGACGATAAGAAAGGAGAGAAGGGGAAG
CACATGGAGGGAGCTACTGCAACAGTAGGAATCGAACAGCAGCAATTCAT
GCCCACCGAGGCCCTGCTGCAAGCGCAAGAGTCCTTGGCGGAGGCGAAGA
AGGAGGGAGTTGGTGGTCCGTGCGATGTTGTGACAAATCATTTTGAAAAG
GAGTGTCGAAAGGTGCAACATGCAGAGAGTTCGAGCCTTTTCGAGGATGA
GGGTTTAATTGGGACTGTAATTGCCAAGCTGCTGGTAGCGGAAGACGAGG
GAGTTGAGGCCGTCCCTCCTGTCTTCAATAACGTGGAGCGCCGAAAGATG
ACTCTGAAGACTTGGACGAACTTCCGGATGATGACCAAAGGCCCAGGCGG
CCACAGACTCTCTGTGGCTCGCATGGATATGGCGCCTTCCACTTCTATCT
CCTATGTCACTGGAGAAGGCGAGCGGAGCCGCAGTGAGTCTGTCCTGCCT
AGAGGAACGACATCCTTTTCGATCAATGTTGACGGCGCGGTAGTGTTAAC
GGCCGCTCACAAGCCCAAGAAGATGGGCAAGATGGCCGCCTTTCGGGCAA
GGTGGAAGCGCGTCTTTCGAGTTCCAGTTCGCAAGAGCTCGTTTTCCCAT
CGGGCCACAGCTGCTACTTCCTCGTGTGGCATGGCTTAGAAAATGGGGGG
ACACTTGTACGTGCACGTGTGAGTGTATGTGCATGTGTCGGTGTTTCCGC
GTACATGTGCGCGCGGGTGCCTATGAGAGCGTAAATTTCTGTGTGTCTAT
GTCTGTAACTTCCATTTATGAGTGTGC

Coding sequence (CDS) from alignment at scaffold_6:1152678..1154504+

>mRNA_3752 ID=mRNA_3752|Name=jgi.p|Nanoce1779_2|629109|organism=Nannochloropsis oceanica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_6:1152678..1154504+ (Nannochloropsis oceanica)
ATGAATCTGTTAAAGTCGAGTCTTGTCTTCTCTTTTGCCTTCGGCATGGT
CTTCACCACCGCCTATACTGGCGTGCCCTTCGAGTACCGCGTCGGTATGG
AGCTGTCTAGCCATCAAGGTATCACGGCCCACATGCCCTCCTTAACCTTG
CATACAAATATTGATGCATTCTACCACCACCTCCACGGGCCGCATCTCGT
CCTTGCAGCCCCGGTGCTTACCCCTGCTACTCCTTACGAGAACACCTCCT
GTGGCATCGAGGGGGTTACCGAGGAGGCCAAGCTAGAAGGTACCTGTCCC
ATCCGGTCTGTCGAGAAAATTTCTTGTAAACATGCTCACGTCAATGTCCA
CAGTGAGGGCTCTACCAAGCTACTCTTGAGGGGGAGTGAAGAAATGAGGT
CCTTCGGGCTTAACACCACGTGCCGCAACGTCCGCAATCACCGTCTGTTT
CTCTCTAAGGACCAGCAGCTGTTCGGACTTTCCGATTCGGAGCTCTTTTT
GAGCAAGGAGGTCGCAGGTTTGGTGGGATTGATGGTGACTTGGTTTATGG
CCTTTCCTGAGTCAACCAGCGACCTGTCCTCGATGACTCGCACGGCGGCT
AGCACACACGTGGTTTTTATTTTCCTTCTTGTGGCCTATGTGCTGGCACT
TTTCATGATCCTTGTAATGCATTTCACGGCTTTGGCGGGGAAGAAGCACA
ACGGGTATTTGAATGTAAGGGTTCCTGAGAGGGAGGAATTGGCAGGGGAC
GATAAGAAAGGAGAGAAGGGGAAGCACATGGAGGGAGCTACTGCAACAGT
AGGAATCGAACAGCAGCAATTCATGCCCACCGAGGCCCTGCTGCAAGCGC
AAGAGTCCTTGGCGGAGGCGAAGAAGGAGGGAGTTGGTGGTCCGTGCGAT
GTTGTGACAAATCATTTTGAAAAGGAGTGTCGAAAGGTGCAACATGCAGA
GAGTTCGAGCCTTTTCGAGGATGAGGGTTTAATTGGGACTGTAATTGCCA
AGCTGCTGGTAGCGGAAGACGAGGGAGTTGAGGCCGTCCCTCCTGTCTTC
AATAACGTGGAGCGCCGAAAGATGACTCTGAAGACTTGGACGAACTTCCG
GATGATGACCAAAGGCCCAGGCGGCCACAGACTCTCTGTGGCTCGCATGG
ATATGGCGCCTTCCACTTCTATCTCCTATGTCACTGGAGAAGGCGAGCGG
AGCCGCAGTGAGTCTGTCCTGCCTAGAGGAACGACATCCTTTTCGATCAA
TGTTGACGGCGCGGTAGTGTTAACGGCCGCTCACAAGCCCAAGAAGATGG
GCAAGATGGCCGCCTTTCGGGCAAGGTGGAAGCGCGTCTTTCGAGTTCCA
GTTCGCAAGAGCTCGTTTTCCCATCGGGCCACAGCTGCTACTTCCTCGTG
TGGCATGGCTTAGATGAATCTGTTAAAGTCGAGTCTTGTCTTCTCTTTTG
CCTTCGGCATGGTCTTCACCACCGCCTATACTGGCGTGCCCTTCGAGTAC
CGCGTCGGTATGGAGCTGTCTAGCCATCAAGGTATCACGGCCCACATGCC
CTCCTTAACCTTGCATACAAATATTGATGCATTCTACCACCACCTCCACG
GGCCGCATCTCGTCCTTGCAGCCCCGGTGCTTACCCCTGCTACTCCTTAC
GAGAACACCTCCTGTGGCATCGAGGGGGTTACCGAGGAGGCCAAGCTAGA
AGGTACCTGTCCCATCCGGTCTGTCGAGAAAATTTCTTGTAAACATGCTC
ACGTCAATGTCCACAGTGAGGGCTCTACCAAGCTACTCTTGAGGGGGAGT
GAAGAAATGAGGTCCTTCGGGCTTAACACCACGTGCCGCAACGTCCGCAA
TCACCGTCTGTTTCTCTCTAAGGACCAGCAGCTGTTCGGACTTTCCGATT
CGGAGCTCTTTTTGAGCAAGGAGGTCGCAGGTTTGGTGGGATTGATGGTG
ACTTGGTTTATGGCCTTTCCTGAGTCAACCAGCGACCTGTCCTCGATGAC
TCGCACGGCGGCTAGCACACACGTGGTTTTTATTTTCCTTCTTGTGGCCT
ATGTGCTGGCACTTTTCATGATCCTTGTAATGCATTTCACGGCTTTGGCG
GGGAAGAAGCACAACGGGTATTTGAATGTAAGGGTTCCTGAGAGGGAGGA
ATTGGCAGGGGACGATAAGAAAGGAGAGAAGGGGAAGCACATGGAGGGAG
CTACTGCAACAGTAGGAATCGAACAGCAGCAATTCATGCCCACCGAGGCC
CTGCTGCAAGCGCAAGAGTCCTTGGCGGAGGCGAAGAAGGAGGGAGTTGG
TGGTCCGTGCGATGTTGTGACAAATCATTTTGAAAAGGAGTGTCGAAAGG
TGCAACATGCAGAGAGTTCGAGCCTTTTCGAGGATGAGGGTTTAATTGGG
ACTGTAATTGCCAAGCTGCTGGTAGCGGAAGACGAGGGAGTTGAGGCCGT
CCCTCCTGTCTTCAATAACGTGGAGCGCCGAAAGATGACTCTGAAGACTT
GGACGAACTTCCGGATGATGACCAAAGGCCCAGGCGGCCACAGACTCTCT
GTGGCTCGCATGGATATGGCGCCTTCCACTTCTATCTCCTATGTCACTGG
AGAAGGCGAGCGGAGCCGCAGTGAGTCTGTCCTGCCTAGAGGAACGACAT
CCTTTTCGATCAATGTTGACGGCGCGGTAGTGTTAACGGCCGCTCACAAG
CCCAAGAAGATGGGCAAGATGGCCGCCTTTCGGGCAAGGTGGAAGCGCGT
CTTTCGAGTTCCAGTTCGCAAGAGCTCGTTTTCCCATCGGGCCACAGCTG
CTACTTCCTCGTGTGGCATGGCTTAG

Synonyms

Publications