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Properties
| Property Name | Value |
|---|
| TranscriptId | 583734 |
| Track | FilteredModels2 |
| ProteinId | 583648 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:145589..148220 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2876 ID=mRNA_2876|Name=jgi.p|Nanoce1779_2|583648|organism=Nannochloropsis oceanica|type=mRNA|length=2374bp
ATGTCCAACTCGTCGATGCTCCCGCCGTGCGACTCCATCCCCTGCGGCGT
TTGCAGAAGAGAGAGAAGGCGACGCAAACGCCCAGCTTCCGCCCTCCATC
CCCCCTCTAGTATGCGCTTGACCCTTCTCATGGCGGCCTGTGTAGGGTGG
ACAGCGAGTCGTTCGTGCGTGCAAGCATTCGTGGGGCCCACCGCACCTCT
CAAAAGTTGCAGCAGCCGGACCAGCGGCTTTGTCCAGCAGCATCAGACCT
CTTCCTCTATCACCTCCCTCCTCCAGCAGCAGAAAATAAGCAGGAGCTTT
AGCGACGCCGTCACTCCCCTCGGTATGGCCCGTGGTCGCAGCGGCACCAG
CAGCAGCGGCAAGGGCAAGCAACGCACCAGGAAGGAAGCATCCCGCCCTT
CCAACCCTTCCTCTCCCTCCTCCCCCAGCAGCAAAAGCCAGGAGGAAGAG
GATTTACTATTTTTCAATAGTGCCATGAGTGGTCCTGTTGCCGATGACGA
GGACGACGATGGCTCGTCGTTGGATGAGGAGGGAGACGACTACGTGTTTA
ATCCTGCAGATTTCCCAATGCTCGAGGGAGAGATTGATTTCTTTGGGGAT
ATGGATGGGTTGGAGGAAGAGTCTGCCACCCCTGCTGCAGCAGCAGCAGC
GGCGGCGACCGATGTGGCACCTACCACGTCCGTGCCTAAGCGTGCGGCGA
AGCTGCCGGTCATTGCAGTGATAGGCCGACCGAACGTCGGGAAATCCACG
ATTGTGAACCGACTTTGCAAGACCATGAGCACTGAGCCTGATGCCATCGT
GTACGACTACGAGGGGGTGACCCGTGATCGGATCTATAGGAAGGCGGAGT
GGAACGGGAGAATGTTCGAGGTAGTGGATACAGGCGGACTTATCTTTGAT
GAAGACCAGGACAACCTGTTTGCGCCGCAGATTCGGGAGCAGGCCTTGTT
GGCGCTTGAGGAGAGTGTGGCGGCTATACTGGTGGTCGATGGACAGGTTG
GGGTGACGACGTTGGACGAGGAAATTGCCAAATTCTTGAGGTTGAAGAAG
AACAAGCCGATTTATGTGGTGGTCAACAAGTGTGAGACACAGAACATGGG
CGAGGCCATGGCGTCCATGTTCTGGAAATTGGGTCTGGGGGAACCGTATC
CCGTGAGTGGGCTGCACGGGACGGGGGTAGCGGAGGTGCTTGAAGCCATG
TTGCCGCATATCTACCACGTGGACGAGGCGGAGAGGGATGAAGCGATTAA
GGTGGCCATTGTAGGTAGGCCGAACGTAGGGAAAAGCTCGCTTTTGAACC
GGTTGTATGGGAAGGAGCGGGCGATTGTTTCGGACATTGCCGGCACGACT
CGCGACGCGGTCGATGCAATGGTGGAGGCGAATGGAAAGATGTATAAGTT
TATTGATACGGCGGGGATCCGGCGGAGGAAGAAGGTGGAATATGGGAATG
AGTTTTTGATGGTCAATCGGGCGTTGAAGGCGGTGAGACGCGCGGATGTT
GTCTTGCTGGTGGTGGATGTTGTGGAGGGGGTGAACGACCAGGACAAGAT
CCTGGCGCAGCGCATCGCGGACGATGGACGGGCATGTGTGATTGTGGCGA
ACAAGTGGGATGCAGTCGAGAAGGACGACAAGACGTTCAACGAGGCTGTG
GTCTACGTGAAAGAGGAGCTGTTCGCCGTCAGTTGGGCTGACGTCCTCTT
CACCTCCGCCCTGACGGGGCAGCGCTGCCACAAGGTTTTCGAGGCTGTTG
ACAAGGCAGCAAAGGCCCATCGCATGCGCGTCAAGACCAGCATCTTGAAT
GAAGTCCTGGGCGAGGCGTTGAAATGGCAACGACCGCCCACCGTGAAAAG
CTCTCAGCAAGGCCGCGTGTACTATTGCAATCAGGTTGCGACCGAGCCCC
CCGCAGTGGTAGTGTTCTGCAACAACCCAAAGCTGTTCCCTGATTCCTAT
AAAAGGTATTTAGATCGTAAATTCCGGGAGTCTCTTGACTTGACTGGCAC
GCCGATTAGATGGCATTTCCGGGGGAAGAAATTGAGGCAGCTGGCTAAGA
CTGGCAGCCCCGTGCCTTATGGCATGCCTGGGAGTTAAAGAGACGGAGGG
GAGGGAGAAGGGAGGAGGGAGAGAGGGGGGGAGTGGTGGGCACATACAAT
CGGTAGGTGGGAGGCCTGGGGGAGTTACGGAGGAGGGGATGGAGGACTGG
AGAGAAAGAGGGAGGGAGGGATTGAGATCTGCATGTAAGTAAATAACGAA
GGGGATGATCTAGGGAGAGGAAGGACTTGGGCGGAGGGGGTCTTGGTGGT
AAGAACACAGAGTGCATTCTGGATTAAGAAAAAGGGCACGATCGAGATGG
CAAATAAAAATAAAGAGAAAGAAG back to topprotein sequence of jgi.p|Nanoce1779_2|583648 >mRNA_2876-protein ID=mRNA_2876-protein|Name=jgi.p|Nanoce1779_2|583648|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp
MSNSSMLPPCDSIPCGVCRRERRRRKRPASALHPPSSMRLTLLMAACVGW
TASRSCVQAFVGPTAPLKSCSSRTSGFVQQHQTSSSITSLLQQQKISRSF
SDAVTPLGMARGRSGTSSSGKGKQRTRKEASRPSNPSSPSSPSSKSQEEE
DLLFFNSAMSGPVADDEDDDGSSLDEEGDDYVFNPADFPMLEGEIDFFGD
MDGLEEESATPAAAAAAAATDVAPTTSVPKRAAKLPVIAVIGRPNVGKST
IVNRLCKTMSTEPDAIVYDYEGVTRDRIYRKAEWNGRMFEVVDTGGLIFD
EDQDNLFAPQIREQALLALEESVAAILVVDGQVGVTTLDEEIAKFLRLKK
NKPIYVVVNKCETQNMGEAMASMFWKLGLGEPYPVSGLHGTGVAEVLEAM
LPHIYHVDEAERDEAIKVAIVGRPNVGKSSLLNRLYGKERAIVSDIAGTT
RDAVDAMVEANGKMYKFIDTAGIRRRKKVEYGNEFLMVNRALKAVRRADV
VLLVVDVVEGVNDQDKILAQRIADDGRACVIVANKWDAVEKDDKTFNEAV
VYVKEELFAVSWADVLFTSALTGQRCHKVFEAVDKAAKAHRMRVKTSILN
EVLGEALKWQRPPTVKSSQQGRVYYCNQVATEPPAVVVFCNNPKLFPDSY
KRYLDRKFRESLDLTGTPIRWHFRGKKLRQLAKTGSPVPYGMPGS* back to topmRNA from alignment at scaffold_7:145589..148220- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2876 ID=mRNA_2876|Name=jgi.p|Nanoce1779_2|583648|organism=Nannochloropsis oceanica|type=mRNA|length=2632bp|location=Sequence derived from alignment at scaffold_7:145589..148220- (Nannochloropsis oceanica)
ATGTCCAACTCGTCGATGCTCCCGCCGTGCGACTCCATCCCCTGCGGCGT
TTGCAGAAGAGAGAGAAGGCGACGCAAACGCCCAGCTTCCGCCCTCCATC
CCCCCTCTAGTATGCGCTTGACCCTTCTCATGGCGGCCTGTGTAGGGTGG
ACAGCGAGTCGTTCGTGCGTGCAAGCATTCGTGGGGCCCACCGCACCTCT
CAAAAGTTGCAGCAGCCGGACCAGCGGCTTTGTCCAGGTAGGAAGAGCAG
TGATTGGACGACAGGAGTGTTGGGGGAAGAGAGGCATAGCCAAAAGTGTG
CTGCTGCTGCTGCGGCAGGCGCGAGATATTATTCACATGGAGAGAGTCTC
CGCATTTGAAGAGCGAGGGGATCCTATGTTTTAATGCTTTCTCGTCTTGT
GGCCCCATAAATATTTGTGGAATCATCATGCGACAGTCATTGCCTCCCAT
GATTGGCAAACCCACTTACCCACGCTCCGCCCCACCCATACACAGCAGCA
TCAGACCTCTTCCTCTATCACCTCCCTCCTCCAGCAGCAGAAAATAAGCA
GGAGCTTTAGCGACGCCGTCACTCCCCTCGGTATGGCCCGTGGTCGCAGC
GGCACCAGCAGCAGCGGCAAGGGCAAGCAACGCACCAGGAAGGAAGCATC
CCGCCCTTCCAACCCTTCCTCTCCCTCCTCCCCCAGCAGCAAAAGCCAGG
AGGAAGAGGATTTACTATTTTTCAATAGTGCCATGAGTGGTCCTGTTGCC
GATGACGAGGACGACGATGGCTCGTCGTTGGATGAGGAGGGAGACGACTA
CGTGTTTAATCCTGCAGATTTCCCAATGCTCGAGGGAGAGATTGATTTCT
TTGGGGATATGGATGGGTTGGAGGAAGAGTCTGCCACCCCTGCTGCAGCA
GCAGCAGCGGCGGCGACCGATGTGGCACCTACCACGTCCGTGCCTAAGCG
TGCGGCGAAGCTGCCGGTCATTGCAGTGATAGGCCGACCGAACGTCGGGA
AATCCACGATTGTGAACCGACTTTGCAAGACCATGAGCACTGAGCCTGAT
GCCATCGTGTACGACTACGAGGGGGTGACCCGTGATCGGATCTATAGGAA
GGCGGAGTGGAACGGGAGAATGTTCGAGGTAGTGGATACAGGCGGACTTA
TCTTTGATGAAGACCAGGACAACCTGTTTGCGCCGCAGATTCGGGAGCAG
GCCTTGTTGGCGCTTGAGGAGAGTGTGGCGGCTATACTGGTGGTCGATGG
ACAGGTTGGGGTGACGACGTTGGACGAGGAAATTGCCAAATTCTTGAGGT
TGAAGAAGAACAAGCCGATTTATGTGGTGGTCAACAAGTGTGAGACACAG
AACATGGGCGAGGCCATGGCGTCCATGTTCTGGAAATTGGGTCTGGGGGA
ACCGTATCCCGTGAGTGGGCTGCACGGGACGGGGGTAGCGGAGGTGCTTG
AAGCCATGTTGCCGCATATCTACCACGTGGACGAGGCGGAGAGGGATGAA
GCGATTAAGGTGGCCATTGTAGGTAGGCCGAACGTAGGGAAAAGCTCGCT
TTTGAACCGGTTGTATGGGAAGGAGCGGGCGATTGTTTCGGACATTGCCG
GCACGACTCGCGACGCGGTCGATGCAATGGTGGAGGCGAATGGAAAGATG
TATAAGTTTATTGATACGGCGGGGATCCGGCGGAGGAAGAAGGTGGAATA
TGGGAATGAGTTTTTGATGGTCAATCGGGCGTTGAAGGCGGTGAGACGCG
CGGATGTTGTCTTGCTGGTGGTGGATGTTGTGGAGGGGGTGAACGACCAG
GACAAGATCCTGGCGCAGCGCATCGCGGACGATGGACGGGCATGTGTGAT
TGTGGCGAACAAGTGGGATGCAGTCGAGAAGGACGACAAGACGTTCAACG
AGGCTGTGGTCTACGTGAAAGAGGAGCTGTTCGCCGTCAGTTGGGCTGAC
GTCCTCTTCACCTCCGCCCTGACGGGGCAGCGCTGCCACAAGGTTTTCGA
GGCTGTTGACAAGGCAGCAAAGGCCCATCGCATGCGCGTCAAGACCAGCA
TCTTGAATGAAGTCCTGGGCGAGGCGTTGAAATGGCAACGACCGCCCACC
GTGAAAAGCTCTCAGCAAGGCCGCGTGTACTATTGCAATCAGGTTGCGAC
CGAGCCCCCCGCAGTGGTAGTGTTCTGCAACAACCCAAAGCTGTTCCCTG
ATTCCTATAAAAGGTATTTAGATCGTAAATTCCGGGAGTCTCTTGACTTG
ACTGGCACGCCGATTAGATGGCATTTCCGGGGGAAGAAATTGAGGCAGCT
GGCTAAGACTGGCAGCCCCGTGCCTTATGGCATGCCTGGGAGTTAAAGAG
ACGGAGGGGAGGGAGAAGGGAGGAGGGAGAGAGGGGGGGAGTGGTGGGCA
CATACAATCGGTAGGTGGGAGGCCTGGGGGAGTTACGGAGGAGGGGATGG
AGGACTGGAGAGAAAGAGGGAGGGAGGGATTGAGATCTGCATGTAAGTAA
ATAACGAAGGGGATGATCTAGGGAGAGGAAGGACTTGGGCGGAGGGGGTC
TTGGTGGTAAGAACACAGAGTGCATTCTGGATTAAGAAAAAGGGCACGAT
CGAGATGGCAAATAAAAATAAAGAGAAAGAAG back to topCoding sequence (CDS) from alignment at scaffold_7:145589..148220- >mRNA_2876 ID=mRNA_2876|Name=jgi.p|Nanoce1779_2|583648|organism=Nannochloropsis oceanica|type=CDS|length=4176bp|location=Sequence derived from alignment at scaffold_7:145589..148220- (Nannochloropsis oceanica)
CAGCATCAGACCTCTTCCTCTATCACCTCCCTCCTCCAGCAGCAGAAAAT
AAGCAGGAGCTTTAGCGACGCCGTCACTCCCCTCGGTATGGCCCGTGGTC
GCAGCGGCACCAGCAGCAGCGGCAAGGGCAAGCAACGCACCAGGAAGGAA
GCATCCCGCCCTTCCAACCCTTCCTCTCCCTCCTCCCCCAGCAGCAAAAG
CCAGGAGGAAGAGGATTTACTATTTTTCAATAGTGCCATGAGTGGTCCTG
TTGCCGATGACGAGGACGACGATGGCTCGTCGTTGGATGAGGAGGGAGAC
GACTACGTGTTTAATCCTGCAGATTTCCCAATGCTCGAGGGAGAGATTGA
TTTCTTTGGGGATATGGATGGGTTGGAGGAAGAGTCTGCCACCCCTGCTG
CAGCAGCAGCAGCGGCGGCGACCGATGTGGCACCTACCACGTCCGTGCCT
AAGCGTGCGGCGAAGCTGCCGGTCATTGCAGTGATAGGCCGACCGAACGT
CGGGAAATCCACGATTGTGAACCGACTTTGCAAGACCATGAGCACTGAGC
CTGATGCCATCGTGTACGACTACGAGGGGGTGACCCGTGATCGGATCTAT
AGGAAGGCGGAGTGGAACGGGAGAATGTTCGAGGTAGTGGATACAGGCGG
ACTTATCTTTGATGAAGACCAGGACAACCTGTTTGCGCCGCAGATTCGGG
AGCAGGCCTTGTTGGCGCTTGAGGAGAGTGTGGCGGCTATACTGGTGGTC
GATGGACAGGTTGGGGTGACGACGTTGGACGAGGAAATTGCCAAATTCTT
GAGGTTGAAGAAGAACAAGCCGATTTATGTGGTGGTCAACAAGTGTGAGA
CACAGAACATGGGCGAGGCCATGGCGTCCATGTTCTGGAAATTGGGTCTG
GGGGAACCGTATCCCGTGAGTGGGCTGCACGGGACGGGGGTAGCGGAGGT
GCTTGAAGCCATGTTGCCGCATATCTACCACGTGGACGAGGCGGAGAGGG
ATGAAGCGATTAAGGTGGCCATTGTAGGTAGGCCGAACGTAGGGAAAAGC
TCGCTTTTGAACCGGTTGTATGGGAAGGAGCGGGCGATTGTTTCGGACAT
TGCCGGCACGACTCGCGACGCGGTCGATGCAATGGTGGAGGCGAATGGAA
AGATGTATAAGTTTATTGATACGGCGGGGATCCGGCGGAGGAAGAAGGTG
GAATATGGGAATGAGTTTTTGATGGTCAATCGGGCGTTGAAGGCGGTGAG
ACGCGCGGATGTTGTCTTGCTGGTGGTGGATGTTGTGGAGGGGGTGAACG
ACCAGGACAAGATCCTGGCGCAGCGCATCGCGGACGATGGACGGGCATGT
GTGATTGTGGCGAACAAGTGGGATGCAGTCGAGAAGGACGACAAGACGTT
CAACGAGGCTGTGGTCTACGTGAAAGAGGAGCTGTTCGCCGTCAGTTGGG
CTGACGTCCTCTTCACCTCCGCCCTGACGGGGCAGCGCTGCCACAAGGTT
TTCGAGGCTGTTGACAAGGCAGCAAAGGCCCATCGCATGCGCGTCAAGAC
CAGCATCTTGAATGAAGTCCTGGGCGAGGCGTTGAAATGGCAACGACCGC
CCACCGTGAAAAGCTCTCAGCAAGGCCGCGTGTACTATTGCAATCAGGTT
GCGACCGAGCCCCCCGCAGTGGTAGTGTTCTGCAACAACCCAAAGCTGTT
CCCTGATTCCTATAAAAGGTATTTAGATCGTAAATTCCGGGAGTCTCTTG
ACTTGACTGGCACGCCGATTAGATGGCATTTCCGGGGGAAGAAATTGAGG
CAGCTGGCTAAGACTGGCAGCCCCGTGCCTTATGGCATGCCTGGGAGTTA
AATGTCCAACTCGTCGATGCTCCCGCCGTGCGACTCCATCCCCTGCGGCG
TTTGCAGAAGAGAGAGAAGGCGACGCAAACGCCCAGCTTCCGCCCTCCAT
CCCCCCTCTAGTATGCGCTTGACCCTTCTCATGGCGGCCTGTGTAGGGTG
GACAGCGAGTCGTTCGTGCGTGCAAGCATTCGTGGGGCCCACCGCACCTC
TCAAAAGTTGCAGCAGCCGGACCAGCGGCTTTGTCCAGCAGCATCAGACC
TCTTCCTCTATCACCTCCCTCCTCCAGCAGCAGAAAATAAGCAGGAGCTT
TAGCGACGCCGTCACTCCCCTCGGTATGGCCCGTGGTCGCAGCGGCACCA
GCAGCAGCGGCAAGGGCAAGCAACGCACCAGGAAGGAAGCATCCCGCCCT
TCCAACCCTTCCTCTCCCTCCTCCCCCAGCAGCAAAAGCCAGGAGGAAGA
GGATTTACTATTTTTCAATAGTGCCATGAGTGGTCCTGTTGCCGATGACG
AGGACGACGATGGCTCGTCGTTGGATGAGGAGGGAGACGACTACGTGTTT
AATCCTGCAGATTTCCCAATGCTCGAGGGAGAGATTGATTTCTTTGGGGA
TATGGATGGGTTGGAGGAAGAGTCTGCCACCCCTGCTGCAGCAGCAGCAG
CGGCGGCGACCGATGTGGCACCTACCACGTCCGTGCCTAAGCGTGCGGCG
AAGCTGCCGGTCATTGCAGTGATAGGCCGACCGAACGTCGGGAAATCCAC
GATTGTGAACCGACTTTGCAAGACCATGAGCACTGAGCCTGATGCCATCG
TGTACGACTACGAGGGGGTGACCCGTGATCGGATCTATAGGAAGGCGGAG
TGGAACGGGAGAATGTTCGAGGTAGTGGATACAGGCGGACTTATCTTTGA
TGAAGACCAGGACAACCTGTTTGCGCCGCAGATTCGGGAGCAGGCCTTGT
TGGCGCTTGAGGAGAGTGTGGCGGCTATACTGGTGGTCGATGGACAGGTT
GGGGTGACGACGTTGGACGAGGAAATTGCCAAATTCTTGAGGTTGAAGAA
GAACAAGCCGATTTATGTGGTGGTCAACAAGTGTGAGACACAGAACATGG
GCGAGGCCATGGCGTCCATGTTCTGGAAATTGGGTCTGGGGGAACCGTAT
CCCGTGAGTGGGCTGCACGGGACGGGGGTAGCGGAGGTGCTTGAAGCCAT
GTTGCCGCATATCTACCACGTGGACGAGGCGGAGAGGGATGAAGCGATTA
AGGTGGCCATTGTAGGTAGGCCGAACGTAGGGAAAAGCTCGCTTTTGAAC
CGGTTGTATGGGAAGGAGCGGGCGATTGTTTCGGACATTGCCGGCACGAC
TCGCGACGCGGTCGATGCAATGGTGGAGGCGAATGGAAAGATGTATAAGT
TTATTGATACGGCGGGGATCCGGCGGAGGAAGAAGGTGGAATATGGGAAT
GAGTTTTTGATGGTCAATCGGGCGTTGAAGGCGGTGAGACGCGCGGATGT
TGTCTTGCTGGTGGTGGATGTTGTGGAGGGGGTGAACGACCAGGACAAGA
TCCTGGCGCAGCGCATCGCGGACGATGGACGGGCATGTGTGATTGTGGCG
AACAAGTGGGATGCAGTCGAGAAGGACGACAAGACGTTCAACGAGGCTGT
GGTCTACGTGAAAGAGGAGCTGTTCGCCGTCAGTTGGGCTGACGTCCTCT
TCACCTCCGCCCTGACGGGGCAGCGCTGCCACAAGGTTTTCGAGGCTGTT
GACAAGGCAGCAAAGGCCCATCGCATGCGCGTCAAGACCAGCATCTTGAA
TGAAGTCCTGGGCGAGGCGTTGAAATGGCAACGACCGCCCACCGTGAAAA
GCTCTCAGCAAGGCCGCGTGTACTATTGCAATCAGGTTGCGACCGAGCCC
CCCGCAGTGGTAGTGTTCTGCAACAACCCAAAGCTGTTCCCTGATTCCTA
TAAAAGGTATTTAGATCGTAAATTCCGGGAGTCTCTTGACTTGACTGGCA
CGCCGATTAGATGGCATTTCCGGGGGAAGAAATTGAGGCAGCTGGCTAAG
ACTGGCAGCCCCGTGCCTTATGGCATGCCTGGGAGTTAAATGTCCAACTC
GTCGATGCTCCCGCCGTGCGACTCCATCCCCTGCGGCGTTTGCAGAAGAG
AGAGAAGGCGACGCAAACGCCCAGCTTCCGCCCTCCATCCCCCCTCTAGT
ATGCGCTTGACCCTTCTCATGGCGGCCTGTGTAGGGTGGACAGCGAGTCG
TTCGTGCGTGCAAGCATTCGTGGGGCCCACCGCACCTCTCAAAAGTTGCA
GCAGCCGGACCAGCGGCTTTGTCCAG back to top
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