jgi.p|Nanoce1779_2|584931, mRNA_3209 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584931
Unique NamemRNA_3209
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1391
Alignment locationscaffold_7:920397..922124 +

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Properties
Property NameValue
TranscriptId585017
TrackFilteredModels2
ProteinId584931
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:920397..922124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584931gene_3209Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584931mRNA_3209-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3209CDS_3209Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3209 ID=mRNA_3209|Name=jgi.p|Nanoce1779_2|584931|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp
ACAGCACAATTTATCAGAGCCATCAGAAAAAGTGTGTGTTAAGCATGGTA
GGCTCAGGGCCTGCTCCAGCAGCAACACATTACACACCCTACAATAAGTC
CCTCCGTGAGATGCCCAAGAAAAGAAAAAGCGTTTCCTTGCCGGCATTTG
GCGAGCCCGTGTGGTCGTCTTGGTGCTCCGATATGCGTGTCATACAAGTC
AGTGTCTCCTTCATGTATGATCGCGGATAGTGGCGCGTCTGGTCCAGCAA
CTAGGCTGCACTGTCTAATTTCGCTTGTCTTGGGATGGGTGGGGAGGTTG
GAGCGCGCACTCACCTCCTACATCCCACATCACCACCGTACAGGTAGCAA
TCAGGTAACAATGATGATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGAC
TTGTAGTCCAGTGCGGTTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGC
AGTTGCGGTAGCAGCCGTGCCCTCCTGATGCCCTCCCTACCATCAAGCTT
TCACGCATCATCTCGTCAACATCGACACACCATGCCCATGGCGGCGTGGT
TCCAGCGTTACTATGGTGAAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGT
GATACGTCCACAACCGCGCAGGGGAAGGAGAAACGGATGGACAAGGTAGC
AAGCGAGTCCAAAGAGGAGGAGCCAGCAACGACACCAGAGCTTCCCACAC
CGCTTTTTTCTAGTCCTGCACCGCGTTTTTTCCGCCTTCTCGCGGGTGCA
TCTCTAACACAAGTGGCCTTCTGGACATCCTATGCTTTTTTACCTGCAGA
GCTGAGTGGAAGCATGGGATACTGGGGGATCTTTGGCTCGGGCGCCTTTG
TTTTGATAGCGCGTCATTTTGCGATGGTACGTGAAATTGACATGTGTATG
TATGTATATGTGTATTGGTTGGAAGGATGAAGGAGAAGTGGGTTTACTTC
AGCATGCGTTTGTACAGCACATGTGTGGTGGCCCTGCGTTGAGCAGAAGG
ACAAGTGGAAGGAGTCCTTGTCCTGTAGATGAGTCGGCCGCGCCATGCAA
GCTTCACCCCAAAATGATACTCTCACTCTCTTCTTCCTCTCCACAGCATT
ATGTGTGGGAGATGGACCAAATATCACCCGTCGCCTTCAGAATTTGCACA
CACACTTTTTGGGGCAATAAGGGTCCCGAGCGCATCGTGCAAATAGGGAC
AACCAAGTGTCAACATACATCGCGCTACATTGCCGCCAAGGTCAAAGGCG
ACTCCTTTTACTATCTGCTCGACATCAAGGAAGGAAAATTTGCCACCAAT
GAGTCTGAAGAGCAGATACTCCGGATTTTCCACGGGCTTCGGACGGACGT
GCATGGCCGAAGTGGGGAGGACGACGGAGAGGACGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|584931

>mRNA_3209-protein ID=mRNA_3209-protein|Name=jgi.p|Nanoce1779_2|584931|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MIADSGASGPATRLHCLISLVLGWVGRLERALTSYIPHHHRTGSNQVTMM
MRRGVLQSGKGLVVQCGLGARRGLQYCSSCGSSRALLMPSLPSSFHASSR
QHRHTMPMAAWFQRYYGEKARALSSSASDTSTTAQGKEKRMDKVASESKE
EEPATTPELPTPLFSSPAPRFFRLLAGASLTQVAFWTSYAFLPAELSGSM
GYWGIFGSGAFVLIARHFAMVREIDMCMYVYVYWLEG*
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mRNA from alignment at scaffold_7:920397..922124+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3209 ID=mRNA_3209|Name=jgi.p|Nanoce1779_2|584931|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at scaffold_7:920397..922124+ (Nannochloropsis oceanica)
ACAGCACAATTTATCAGAGCCATCAGAAAAAGTGTGTGTTAAGCATGGTA
GGCTCAGGGCCTGCTCCAGCAGCAACACATTACACACCCTACAATAAGTC
CCTCCGTGAGATGCCCAAGAAAAGAAAAAGCGTTTCCTTGCCGGCATTTG
GCGAGCCCGTGTGGTCGTCTTGGTGCTCCGATATGCGTGTCATACAAGTC
AGTGTCTCCTTCATGTATGATCGCGGATAGTGGCGCGTCTGGTCCAGCAA
CTAGGCTGCACTGTCTAATTTCGCTTGTCTTGGGATGGGTGGGGAGGTTG
GAGCGCGCACTCACCTCCTACATCCCACATCACCACCGTACAGGTAGCAA
TCAGGTAACAATGATGATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGAC
TTGTAGTCCAGTGCGGTTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGC
AGTTGCGGTAGCAGCCGTGCCCTCCTGATGCCCTCCCTACCATCAAGCTT
TCACGCATCATCTCGTCAACATCGACACACCATGCCCATGGCGGCGTGGT
TCCAGCGTTACTATGGTGAAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGT
GATACGTCCACAACCGCGCAGGGGAAGGAGAAACGGATGGACAAGGTAGC
AAGCGAGTCCAAAGAGGAGGAGCCAGCAACGACACCAGAGCTTCCCACAC
CGCTTTTTTCTAGTCCTGCACCGGTATGTGAGTGGATGAGAAAGCGAATA
TTGCGGTGTATATGAAAATTTGCTAATCTCCATGCTGTTGGTCACTATTT
GTCTCTCCGTCAATCTCTAACAATCCAAACATCCATTGCTCACGCCCTGT
CATGCACACATCCTCTTATTGAATCAATCCAGCGTTTTTTCCGCCTTCTC
GCGGGTGCATCTCTAACACAAGTGGCCTTCTGGACATCCTATGCTTTTTT
ACCTGCAGAGCTGAGTGGAAGCATGGGATACTGGGGGATCTTTGGCTCGG
GCGCCTTTGTTTTGATAGCGCGTCATTTTGCGATGGTACGTGAAATTGAC
ATGTGTATGTATGTATATGTGTATTGGTTGGAAGGATGAAGGAGAAGTGG
GTTTACTTCAGCATGCGTTTGTACAGCACATGTGTGGTGGCCCTGCGTTG
AGCAGAAGGACAAGTGGAAGGAGTCCTTGTCCTGTAGATGAGTCGGCCGC
GCCATGCAAGCTTCACCCCAAAATGATACTCTCACTCTCTTCTTCCTCTC
CACAGCATTATGTGTGGGAGATGGACCAAATATCACCCGTCGCCTTCAGA
ATTTGCACACACACTTTTTGGGGCAATAAGGGTCCCGAGCGCATCGTGCA
AATAGGGACAACCAAGTGTCAACATACATCGCGGTAATATATATATATAT
ATATATATATATATATCAATCAGACATGCTCGCCTAAACCTAAAACATGT
AGTTGATTCCAATTTCTAGGTTCGATACTATCCTGTGCGCTTCAAGTACA
GAGAGGTCCACGCACCCCCCCTTACATCTTTCCTTCCTCTCTCCATCCTC
ACTTCCAACAGCTACATTGCCGCCAAGGTCAAAGGCGACTCCTTTTACTA
TCTGCTCGACATCAAGGAAGGAAAATTTGCCACCAATGAGTCTGAAGAGC
AGATACTCCGGATTTTCCACGGGCTTCGGACGGACGTGCATGGCCGAAGT
GGGGAGGACGACGGAGAGGACGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_7:920397..922124+

>mRNA_3209 ID=mRNA_3209|Name=jgi.p|Nanoce1779_2|584931|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_7:920397..922124+ (Nannochloropsis oceanica)
ATGATCGCGGATAGTGGCGCGTCTGGTCCAGCAACTAGGCTGCACTGTCT
AATTTCGCTTGTCTTGGGATGGGTGGGGAGGTTGGAGCGCGCACTCACCT
CCTACATCCCACATCACCACCGTACAGGTAGCAATCAGGTAACAATGATG
ATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGACTTGTAGTCCAGTGCGG
TTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGCAGTTGCGGTAGCAGCC
GTGCCCTCCTGATGCCCTCCCTACCATCAAGCTTTCACGCATCATCTCGT
CAACATCGACACACCATGCCCATGGCGGCGTGGTTCCAGCGTTACTATGG
TGAAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGTGATACGTCCACAACCG
CGCAGGGGAAGGAGAAACGGATGGACAAGGTAGCAAGCGAGTCCAAAGAG
GAGGAGCCAGCAACGACACCAGAGCTTCCCACACCGCTTTTTTCTAGTCC
TGCACCGCGTTTTTTCCGCCTTCTCGCGGGTGCATCTCTAACACAAGTGG
CCTTCTGGACATCCTATGCTTTTTTACCTGCAGAGCTGAGTGGAAGCATG
GGATACTGGGGGATCTTTGGCTCGGGCGCCTTTGTTTTGATAGCGCGTCA
TTTTGCGATGGTACGTGAAATTGACATGTGTATGTATGTATATGTGTATT
GGTTGGAAGGATGAATGATCGCGGATAGTGGCGCGTCTGGTCCAGCAACT
AGGCTGCACTGTCTAATTTCGCTTGTCTTGGGATGGGTGGGGAGGTTGGA
GCGCGCACTCACCTCCTACATCCCACATCACCACCGTACAGGTAGCAATC
AGGTAACAATGATGATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGACTT
GTAGTCCAGTGCGGTTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGCAG
TTGCGGTAGCAGCCGTGCCCTCCTGATGCCCTCCCTACCATCAAGCTTTC
ACGCATCATCTCGTCAACATCGACACACCATGCCCATGGCGGCGTGGTTC
CAGCGTTACTATGGTGAAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGTGA
TACGTCCACAACCGCGCAGGGGAAGGAGAAACGGATGGACAAGGTAGCAA
GCGAGTCCAAAGAGGAGGAGCCAGCAACGACACCAGAGCTTCCCACACCG
CTTTTTTCTAGTCCTGCACCGCGTTTTTTCCGCCTTCTCGCGGGTGCATC
TCTAACACAAGTGGCCTTCTGGACATCCTATGCTTTTTTACCTGCAGAGC
TGAGTGGAAGCATGGGATACTGGGGGATCTTTGGCTCGGGCGCCTTTGTT
TTGATAGCGCGTCATTTTGCGATGGTACGTGAAATTGACATGTGTATGTA
TGTATATGTGTATTGGTTGGAAGGATGA
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Synonyms
Publications